scholarly journals The fluid physics of signal perception by mate-tracking copepods

1998 ◽  
Vol 353 (1369) ◽  
pp. 787-804 ◽  
Author(s):  
Jeannette Yen ◽  
Marc J. Weissburg ◽  
Michael H. Doall

Within laboratory–induced swarms of the marine copepod Temora longicornis , the male exhibits chemically mediated trail–following behaviour, concluding with fluid mechanical provocation of the mate–capture response. The location and structure of the invisible trail were determined by examining the specific behaviour of the female copepods creating the signal, the response of the male to her signal, and the fluid physics of signal persistence. Using the distance of the mate–tracking male from the ageing trail of the female, we estimated that the molecular diffusion coefficient of the putative pheromonal stimulant was 2.7 times –5 cm 2 s –1 , or 1000 times slower than the diffusion of momentum. Estimates of signal strength levels, using calculations of diffusive properties of odour trails and attenuation rates of fluid mechanical signals, were compared to the physiological and behavioural threshold detection levels. Males find trails because of strong across–plume chemical gradients; males sometimes go the wrong way because of weak along–plume gradients; males lose the trail when the female hops because of signal dilution; and mate–capture behaviour is elicited by suprathreshold flow signals. The male is stimulated by the female odour to accelerate along the trail to catch up with her, and the boundary layer separating the signal from the chemosensitive receptors along the copepod antennule thins. Diffusion times, and hence reaction times, shorten and behavioural orientation responses can proceed more quickly. While ‘perceptive’ distance to the odour signal in the trail or the fluid mechanical signal from the female remains within 1 to 2 body lengths (< 5 mm), the ‘reactive’ distance between males and females was an order of magnitude larger. Therefore, when nearest–neighbour distances are 5 cm or less, as in swarms of 10 4 copepods m –3 , mating events are facilitated. The strong similarity in the structure of mating trails and vortex tubes (isotropic, millimetre—centimetre scale, 10:1 aspect ratio, 10 s persistence), indicates that these trails are constrained by the same physical forces that influence water motion in a low Reynolds number fluid regime, where viscosity limits forces to the molecular scale. The exploratory reaches of mating trails appear inscribed within Kolmogorov eddies and may represent a measure of eddy size. Biologically formed mating trails, however, are distinct in their flow velocity and chemical composition from common small–scale turbulent features; and mechanoreceptive and chemoreceptive copepods use their senses to discriminate these differences. Zooplankton are not aimless wanderers in a featureless environment. Their ambit is replete with clues that guide them in their efforts for survival in the ocean.

2018 ◽  
Vol 64 (247) ◽  
pp. 745-758 ◽  
Author(s):  
E. DE ANDRÉS ◽  
J. OTERO ◽  
F. NAVARRO ◽  
A. PROMIŃSKA ◽  
J. LAPAZARAN ◽  
...  

ABSTRACTWe have developed a two-dimensional coupled glacier–fjord model, which runs automatically using Elmer/Ice and MITgcm software packages, to investigate the magnitude of submarine melting along a vertical glacier front and its potential influence on glacier calving and front position changes. We apply this model to simulate the Hansbreen glacier–Hansbukta proglacial–fjord system, Southwestern Svalbard, during the summer of 2010. The limited size of this system allows us to resolve some of the small-scale processes occurring at the ice–ocean interface in the fjord model, using a 0.5 s time step and a 1 m grid resolution near the glacier front. We use a rich set of field data spanning the period April–August 2010 to constrain, calibrate and validate the model. We adjust circulation patterns in the fjord by tuning subglacial discharge inputs that best match observed temperature while maintaining a compromise with observed salinity, suggesting a convectively driven circulation in Hansbukta. The results of our model simulations suggest that both submarine melting and crevasse hydrofracturing exert important controls on seasonal frontal ablation, with submarine melting alone not being sufficient for reproducing the observed patterns of seasonal retreat. Both submarine melt and calving rates accumulated along the entire simulation period are of the same order of magnitude, ~100 m. The model results also indicate that changes in submarine melting lag meltwater production by 4–5 weeks, which suggests that it may take up to a month for meltwater to traverse the englacial and subglacial drainage network.


2008 ◽  
Vol 54 (185) ◽  
pp. 315-323 ◽  
Author(s):  
Helgard Anschütz ◽  
Daniel Steinhage ◽  
Olaf Eisen ◽  
Hans Oerter ◽  
Martin Horwath ◽  
...  

AbstractSpatio-temporal variations of the recently determined accumulation rate are investigated using ground-penetrating radar (GPR) measurements and firn-core studies. The study area is located on Ritscherflya in western Dronning Maud Land, Antarctica, at an elevation range 1400–1560 m. Accumulation rates are derived from internal reflection horizons (IRHs), tracked with GPR, which are connected to a dated firn core. GPR-derived internal layer depths show small relief along a 22 km profile on an ice flowline. Average accumulation rates are about 190 kg m−2 a−1 (1980–2005) with spatial variability (1σ) of 5% along the GPR profile. The interannual variability obtained from four dated firn cores is one order of magnitude higher, showing 1σ standard deviations around 30%. Mean temporal variations of GPRderived accumulation rates are of the same magnitude or even higher than spatial variations. Temporal differences between 1980–90 and 1990–2005, obtained from two dated IRHs along the GPR profile, indicate temporally non-stationary processes, linked to spatial variations. Comparison with similarly obtained accumulation data from another coastal area in central Dronning Maud Land confirms this observation. Our results contribute to understanding spatio-temporal variations of the accumulation processes, necessary for the validation of satellite data (e.g. altimetry studies and gravity missions such as Gravity Recovery and Climate Experiment (GRACE)).


2019 ◽  
Vol 141 (8) ◽  
Author(s):  
Nagabhushana Rao Vadlamani ◽  
Teng Cao ◽  
Rob Watson ◽  
Paul G. Tucker

In this paper, we investigate the coupled interaction between a new short intake design with a modern fan in a high-bypass ratio civil engine, specifically under the off-design condition of high incidence. The interaction is expected to be much more significant than that on a conventional intake. The performance of both the intake-alone and rotor-alone configurations are examined under isolation. Subsequently, a comprehensive understanding on the two-way interaction between intake and fan is presented. This includes the effect of fan on intake angles of attack (AoA) tolerance (FoI) and the effect of circumferential and radial flow distortion induced by the intake on the fan performance (IoF). In the FoI scenario, the rotor effectively redistributes the mass flow at the fan-face. The AoA tolerance of the short-intake design has increased by ≈4 deg when compared with the intake-alone configuration. Dynamic nature of distortion due to shock unsteadiness has been quantified. ST plots and power spectral density (PSD) of pressure fluctuations show the existence of a spectral gap between the shock unsteadiness and blade passing, with almost an order of magnitude difference in the corresponding frequencies. In the IoF scenario, both the “large” (O(360 deg)) and “small” scale distortion (O(10–60 deg)) induced by the intake results in a non-uniform inflow to the rotor. Sector analysis reveals a substantial variation in the local operating condition of the fan as opposed to its steady characteristic. Streamline curvature, upwash, and wake thickening are identified to be the three key factors affecting the fan performance. These underlying mechanisms are discussed in detail to provide further insights into the physical understanding of the fan-intake interaction. In addition to the shock-induced separation on the intake lip, the current study shows that shorter intakes are much more prone to the upwash effect at higher AoA. Insufficient flow straightening along the engine axis is reconfirmed to be one of the limiting factors for the short-intake design.


Author(s):  
Nita Solehati ◽  
Joonsoo Bae ◽  
Agus Pulung Sasmito

Mixing in chemical microreactors is a multi-scale processes as the transport mechanisms occur at different length scales. The small scale mixing depends mainly on molecular diffusion which causes conventional microchannel T-junction has poor mixing quality. To improve the quality, one can utilize secondary flow generated by wavy structure to enhance chaotic mixing. To gain better understanding of the interplay of transport mechanism, we develop numerical model for mixing in micro-channel T-junction with wavy structure. To ensure robust and accurate solutions, several discretization methods and mesh sizes were tested and compared. It is found that the solutions are sensitive to the Reynolds; huge amount of mesh (>107) is required to resolve small molecular diffusion and chaotic mixing especially at high Schmidt number, whilst relatively lesser mesh is found to be sufficient for conventional T-junction. Further, parallelization is found to be beneficial to expedite the computation, albeit the speed is not linear with the number of the processors. The mixing quality of T-junction with wavy structure is then compared with that of conventional T-junction counterpart. It is noted that up to 50% improvement of mixing quality is achieved with wavy structure which has potential for several applications.


2010 ◽  
Vol 19 (02) ◽  
pp. 183-217 ◽  
Author(s):  
REBECCA J. DANOS ◽  
ROBERT H. BRANDENBERGER

We describe a new code to search for signatures of cosmic strings in cosmic microwave anisotropy maps. The code implements the Canny algorithm, an edge detection algorithm designed to search for the lines of large gradients in maps. Such a gradient signature which is coherent in position-space is produced by cosmic strings via the Kaiser–Stebbins effect. We test the power of our new code to set limits on the tension of the cosmic strings by analyzing simulated data, with and without cosmic strings. We compare maps with a pure Gaussian scale-invariant power spectrum with maps which have a contribution of a distribution of cosmic strings obeying a scaling solution. The maps have angular scale and angular resolution comparable to what current and future ground-based small-scale cosmic microwave anisotropy experiments will achieve. We present tests of the codes, indicate the limits on the string tension which could be set with the current code, and describe various ways to refine the analysis. Our results indicate that when applied to the data of ongoing cosmic microwave experiments such as the South Pole Telescope project, the sensitivity of our method to the presence of cosmic strings will be more than an order of magnitude better than the limits from existing analyses.


2019 ◽  
Vol 35 (17) ◽  
pp. 3146-3147 ◽  
Author(s):  
Adrien L S Jacquin ◽  
Duncan T Odom ◽  
Margus Lukk

Abstract Summary CRISPR/Cas9 system requires short guide RNAs (sgRNAs) to direct genome modification. Most currently available tools for sgRNA design operate only with standard reference genomes, and are best suited for small-scale projects. To address these limitations, we developed Crisflash, a software tool for fast sgRNA design and potential off-target discovery, built for performance and flexibility. Crisflash can rapidly design CRISPR guides against any sequenced genome or genome sequences, and can optimize guide accuracy by incorporating user-supplied variant data. Crisflash is over an order of magnitude faster than comparable tools, even using a single CPU core, and efficiently and robustly scores the potential off-targeting of all possible candidate CRISPR guide oligonucleotides. Availability and implementation https://github.com/crisflash Supplementary information Supplementary data are available at Bioinformatics online.


2019 ◽  
Vol 76 (4) ◽  
pp. 1077-1091 ◽  
Author(s):  
Fuqing Zhang ◽  
Y. Qiang Sun ◽  
Linus Magnusson ◽  
Roberto Buizza ◽  
Shian-Jiann Lin ◽  
...  

Abstract Understanding the predictability limit of day-to-day weather phenomena such as midlatitude winter storms and summer monsoonal rainstorms is crucial to numerical weather prediction (NWP). This predictability limit is studied using unprecedented high-resolution global models with ensemble experiments of the European Centre for Medium-Range Weather Forecasts (ECMWF; 9-km operational model) and identical-twin experiments of the U.S. Next-Generation Global Prediction System (NGGPS; 3 km). Results suggest that the predictability limit for midlatitude weather may indeed exist and is intrinsic to the underlying dynamical system and instabilities even if the forecast model and the initial conditions are nearly perfect. Currently, a skillful forecast lead time of midlatitude instantaneous weather is around 10 days, which serves as the practical predictability limit. Reducing the current-day initial-condition uncertainty by an order of magnitude extends the deterministic forecast lead times of day-to-day weather by up to 5 days, with much less scope for improving prediction of small-scale phenomena like thunderstorms. Achieving this additional predictability limit can have enormous socioeconomic benefits but requires coordinated efforts by the entire community to design better numerical weather models, to improve observations, and to make better use of observations with advanced data assimilation and computing techniques.


Computation ◽  
2020 ◽  
Vol 8 (2) ◽  
pp. 50
Author(s):  
Stephan Lenz ◽  
Martin Geier ◽  
Manfred Krafczyk

The simulation of fire is a challenging task due to its occurrence on multiple space-time scales and the non-linear interaction of multiple physical processes. Current state-of-the-art software such as the Fire Dynamics Simulator (FDS) implements most of the required physics, yet a significant drawback of this implementation is its limited scalability on modern massively parallel hardware. The current paper presents a massively parallel implementation of a Gas Kinetic Scheme (GKS) on General Purpose Graphics Processing Units (GPGPUs) as a potential alternative modeling and simulation approach. The implementation is validated for turbulent natural convection against experimental data. Subsequently, it is validated for two simulations of fire plumes, including a small-scale table top setup and a fire on the scale of a few meters. We show that the present GKS achieves comparable accuracy to the results obtained by FDS. Yet, due to the parallel efficiency on dedicated hardware, our GKS implementation delivers a reduction of wall-clock times of more than an order of magnitude. This paper demonstrates the potential of explicit local schemes in massively parallel environments for the simulation of fire.


1993 ◽  
Vol 3 (2) ◽  
pp. 95 ◽  
Author(s):  
RA Shakesby ◽  
CDA Coelho ◽  
AD Ferreira ◽  
JP Terry ◽  
RPD Walsh

The Agueda Basin, north-central Portugal is comparatively wet (rainfall, 1600-1800 mm/yr) with frequent, relatively large storms in autumn and winter yet the summer drought is sufficiently long and consistent for frequent forest wildfires. This paper discusses wildfire impacts in such a wet Mediterranean environment on soil hydrophobicity, infiltration capacity, overland flow coefficients, soil loss, rainsplash detachment and small-scale ground level changes for Eucalyptus globulus and Pinus pinaster forest: (1) 0-2 years after fire ('new' burn); (2) 3-4 years after fire ('old' burn); and (3) 'mature' (or long unburnt) sites. For 'new' burn sites, rainsplash detachment rates are an order of magnitude and soil losses two orders of magnitude higher than for 'old' burn sites and both are two orders of magnitude higher than for 'mature' sites. Soils are hydrophobic in all three categories of sites, but infiltration capacities are lower at 'new' burn and 'old' burn than at 'mature' sites. Overland flow coefficients on long unburnt sites were low while on burnt sites they were high and tended to be higher for summer and autumn than for winter and spring, implying enhanced hydrophobicity under summer drought conditions, causing decreased infiltration capacity and increased overland flow. The distinctiveness of fire effects on soil erosion and hydrology in this wet Mediterranean environment and implications for post-fire management are discussed.


2020 ◽  
Author(s):  
Ronald van der A ◽  
Jos de Laat ◽  
Henk Eskes ◽  
Jieying Ding

&lt;p&gt;&lt;span&gt;&lt;span&gt;New TROPOMI (Sentinel 5P) high quality satellite measurements of nitrogen dioxide (NO&lt;sub&gt;2&lt;/sub&gt;) over snow-covered regions of Siberia reveal previously undocumented but significant nitrogen oxides (NO&lt;sub&gt;x&lt;/sub&gt; = NO + NO&lt;sub&gt;2&lt;/sub&gt;) emissions associated with the natural gas industry in Western Siberia. Besides gas drilling and natural gas power plants, also gas compressor stations for the transport of natural gas are sources of high amounts of NO&lt;sub&gt;x&lt;/sub&gt; emissions, which are emitted in otherwise pristine regions. The emissions from these remote gas compressor stations are at least an order of magnitude larger than those reported for North American gas compressor stations, possibly related to less stringent environmental regulations in Siberia compared to the United States. This discovery was made possible thanks to a newly developed technique for discriminating snow covered surfaces from clouds, which for the first time allows for satellite measurements of tropospheric NO&lt;sub&gt;2&lt;/sub&gt; columns over large boreal snow-covered areas. This results in 23% more TROPOMI observations on an annual basis. Furthermore, these observations have a precision four times better than nearly any TROPOMI observation over other areas and surfaces around the world. These new results highlight the potential of TROPOMI on Sentinel 5P as well as future satellite missions for monitoring small-scale emissions&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;


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