scholarly journals Discovering hidden brain network responses to naturalistic stimuli via tensor component analysis of multi-subject fMRI data

2021 ◽  
Author(s):  
Guoqiang Hu ◽  
Huanjie Li ◽  
Wei Zhao ◽  
Yuxing Hao ◽  
Zonglei Bai ◽  
...  
Keyword(s):  
Spectral Clustering ◽  
Large Scale ◽  
Brain Networks ◽  
Motor Task ◽  
Component Analysis ◽  
Brain Regions ◽  
Brain Network ◽  
Tensor Component ◽  
Fmri Data ◽  
Neural Responses

AbstractThe study of brain network interactions during naturalistic stimuli facilitates a deeper understanding of human brain function. Intersubject correlation (ISC) analysis of functional magnetic resonance imaging (fMRI) data is a widely used method that can measure neural responses to naturalistic stimuli that are consistent across subjects. However, interdependent correlation values in ISC artificially inflated the degrees of freedom, which hinders the investigation of individual differences. Besides, the existing ISC model mainly focus on similarities between subjects but fails to distinguish neural responses to different stimuli features. To estimate large-scale brain networks evoked with naturalistic stimuli, we propose a novel analytic framework to characterize shared spatio-temporal patterns across subjects in a purely data-driven manner. In the framework, a third-order tensor is constructed from the timeseries extracted from all brain regions from a given parcellation, for all participants, with modes of the tensor corresponding to spatial distribution, time series and participants. Tensor component analysis (TCA) will then reveal spatially and temporally shared components, i.e., naturalistic stimuli evoked networks, their temporal courses of activity and subject loadings of each component. To enhance the reproducibility of the estimation with TCA, a novel spectral clustering method, tensor spectral clustering, was proposed and applied to evaluate the stability of TCA algorithm. We demonstrate the effectiveness of the proposed framework via simulations and real fMRI data collected during a motor task with a traditional fMRI study design. We also apply the proposed framework to fMRI data collected during passive movie watching to illustrate how reproducible brain networks are identified evoked by naturalistic movie viewing.

scholarly journals Reconfiguration of human evolving large-scale epileptic brain networks prior to seizures: an evaluation with node centralities

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Rieke Fruengel ◽  
Timo Bröhl ◽  
Thorsten Rings ◽  
Klaus Lehnertz
Keyword(s):  
Large Scale ◽  
Brain Networks ◽  
Brain Regions ◽  
Brain Network ◽  
Theoretical Concept ◽  
Global Network ◽  
Time Resolved ◽  
Functional Connections ◽  
Node Centrality ◽  
Network Mechanism

AbstractPrevious research has indicated that temporal changes of centrality of specific nodes in human evolving large-scale epileptic brain networks carry information predictive of impending seizures. Centrality is a fundamental network-theoretical concept that allows one to assess the role a node plays in a network. This concept allows for various interpretations, which is reflected in a number of centrality indices. Here we aim to achieve a more general understanding of local and global network reconfigurations during the pre-seizure period as indicated by changes of different node centrality indices. To this end, we investigate—in a time-resolved manner—evolving large-scale epileptic brain networks that we derived from multi-day, multi-electrode intracranial electroencephalograpic recordings from a large but inhomogeneous group of subjects with pharmacoresistant epilepsies with different anatomical origins. We estimate multiple centrality indices to assess the various roles the nodes play while the networks transit from the seizure-free to the pre-seizure period. Our findings allow us to formulate several major scenarios for the reconfiguration of an evolving epileptic brain network prior to seizures, which indicate that there is likely not a single network mechanism underlying seizure generation. Rather, local and global aspects of the pre-seizure network reconfiguration affect virtually all network constituents, from the various brain regions to the functional connections between them.

scholarly journals Intracranial brain stimulation modulates fMRI-based network switching

2021 ◽  
Author(s):  
Mangor Pedersen ◽  
Andrew Zalesky
Keyword(s):  
Clinical Efficacy ◽  
Brain Stimulation ◽  
Large Scale ◽  
Brain Networks ◽  
Network Models ◽  
Brain Regions ◽  
Brain Network ◽  
Intracranial Stimulation ◽  
List Type ◽  
Network Modelling

SummaryThe extent to which resting-state fMRI (rsfMRI) reflects direct neuronal changes remains unknown. Using 160 simultaneous rsfMRI and intracranial brain stimulation recordings acquired in 26 individuals with epilepsy (with varying electrode locations), we tested whether brain networks dynamically change during intracranial brain stimulation, aiming to establish whether switching between brain networks is reduced during intracranial brain stimulation. As the brain spontaneously switches between a repertoire of intrinsic functional network configurations and the rate of switching is typically increased in brain disorders, we hypothesised that intracranial stimulation would reduce the brain’s switching rate, thus potentially normalising aberrant brain network dynamics. To test this hypothesis, we quantified the rate that brain regions changed networks over time in response to brain stimulation, using network switching applied to multilayer modularity analysis of time-resolved rsfMRI connectivity. Network switching was significantly decreased during epochs with brain stimulation compared to epochs with no brain stimulation. The initial stimulation onset of brain stimulation was associated with the greatest decrease in network switching, followed by a more consistent reduction in network switching throughout the scans. These changes were most commonly observed in cortical networks spatially distant from the stimulation targets. Our results suggest that neuronal perturbation is likely to modulate large-scale brain networks, and multilayer network modelling may be used to inform the clinical efficacy of brain stimulation in neurological disease.HighlightsrsfMRI network switching is attenuated during intracranial brain stimulationStimulation-induced switching is observed distant from electrode targetsOur results are validated across a range of network parametersNetwork models may inform clinical efficacy of brain stimulation

scholarly journals Whole-brain estimates of directed connectivity for human connectomics

2020 ◽  
Author(s):  
Stefan Frässle ◽  
Zina M. Manjaly ◽  
Cao T. Do ◽  
Lars Kasper ◽  
Klaas P. Pruessmann ◽  
...  
Keyword(s):  
Functional Connectivity ◽  
Large Scale ◽  
Brain Networks ◽  
Motor Task ◽  
Brain Network ◽  
Brain Organization ◽  
Whole Brain ◽  
Functional Roles ◽  
Reciprocal Connections ◽  
Theoretical Analyses

ABSTRACTConnectomics is essential for understanding large-scale brain networks but requires that individual connection estimates are neurobiologically interpretable. In particular, a principle of brain organization is that reciprocal connections between cortical areas are functionally asymmetric. This is a challenge for fMRI-based connectomics in humans where only undirected functional connectivity estimates are routinely available. By contrast, whole-brain estimates of effective (directed) connectivity are computationally challenging, and emerging methods require empirical validation.Here, using a motor task at 7T, we demonstrate that a novel generative model can infer known connectivity features in a whole-brain network (>200 regions, >40,000 connections) highly efficiently. Furthermore, graph-theoretical analyses of directed connectivity estimates identify functional roles of motor areas more accurately than undirected functional connectivity estimates. These results, which can be achieved in an entirely unsupervised manner, demonstrate the feasibility of inferring directed connections in whole-brain networks and open new avenues for human connectomics.

scholarly journals Towards an information theoretical description of communication in brain networks

2021 ◽  
pp. 1-23
Author(s):  
Enrico Amico ◽  
Kausar Abbas ◽  
Duy Anh Duong-Tran ◽  
Uttara Tipnis ◽  
Meenusree Rajapandian ◽  
...  
Keyword(s):  
Information Transfer ◽  
Large Scale ◽  
Brain Networks ◽  
Brain Regions ◽  
Brain Network ◽  
Theoretical Description ◽  
Structural Topology ◽  
Communication Dynamics ◽  
The Brain ◽  
The Way

Modeling communication dynamics in the brain is a key challenge in network neuroscience. We present here a framework that combines two measurements for any system where different communication processes are taking place on top of a fixed structural topology: Path Processing Score (PPS) estimates how much the brain signal has changed or has been transformed between any two brain regions (source and target); Path Broadcasting Strength (PBS) estimates the propagation of the signal through edges adjacent to the path being assessed. We use PPS and PBS to explore communication dynamics in large-scale brain networks. We show that brain communication dynamics can be divided into three main “communication regimes” of information transfer: absent communication (no communication happening); relay communication (information is being transferred almost intact); transducted communication (the information is being transformed). We use PBS to categorize brain regions based on the way they broadcast information. Subcortical regions are mainly direct broadcasters to multiple receivers; Temporal and frontal nodes mainly operate as broadcast relay brain stations; Visual and somato-motor cortices act as multi-channel transducted broadcasters. This work paves the way towards the field of brain network information theory by providing a principled methodology to explore communication dynamics in large-scale brain networks.

scholarly journals Resistive index of internal carotid artery and brain networks in patients with chronic cerebral ischemia

2021 ◽  
Author(s):  
VF Fokin ◽  
NV Ponomareva ◽  
RB Medvedev ◽  
RN Konovalov ◽  
MV Krotenkova ◽  
...  
Keyword(s):  
Cerebral Ischemia ◽  
Carotid Artery ◽  
Cognitive Functions ◽  
Brain Networks ◽  
Resistive Index ◽  
Brain Regions ◽  
Brain Network ◽  
Fmri Data ◽  
Chronic Cerebral Ischemia ◽  
Effective Prevention

Quantitative assessment of cerebral hemodynamics is important for patients with chronic cerebral ischemia (CCI), as it helps to reveal the pathogenesis of the disease and set the course for effective prevention and treatment. The study was aimed to assess the correlation of the left carotid artery (ICA) resistive index (RI) with cognitive functions and brain network organization based on fMRI data in patients with CCI (51 males and 105 females). The listed above indicators were studied in patients with the left ICA RI values below and above the average (0.54 ± 0.013). The lower, normal physiological ICA resistance levels corresponded to the more successful realization of verbal cognitive functions. In the first group, RI was within normal range (RI = 0.42 ± 0.007), and in the second group RI exceeded normal levels (RI = 0.61 ± 0.01). Variation of the right ICA RI did not correlate with the characteristics of verbal cognitive functions. FMRI data analysis was used to assess the differences in connectivity between various brain regions in the groups with low and high RI. The normal physiological and elevated RI values of the left ICA correlated with differences in the organization of brain networks: normal physiological RI values corresponded to a better organization of hemispheric connections in the basal ganglia and brainstem, and high RI values corresponded to a better organization of connections between the frontal regions and the cerebellum as well as occipital areas of the cerebral cortex. The left ICA RI can be considered as a biomarker of cognitive decline and brain networks reorganization in patients with CCI.

scholarly journals On the structural connectivity of large-scale models of brain networks at cellular level

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Giuseppe Giacopelli ◽  
Domenico Tegolo ◽  
Emiliano Spera ◽  
Michele Migliore
Keyword(s):  
Large Scale ◽  
Brain Networks ◽  
Structural Connectivity ◽  
Network Models ◽  
Brain Regions ◽  
Cellular Level ◽  
Scale Model ◽  
Mathematical Framework ◽  
Underlying Mechanisms ◽  
Experimental Findings

AbstractThe brain’s structural connectivity plays a fundamental role in determining how neuron networks generate, process, and transfer information within and between brain regions. The underlying mechanisms are extremely difficult to study experimentally and, in many cases, large-scale model networks are of great help. However, the implementation of these models relies on experimental findings that are often sparse and limited. Their predicting power ultimately depends on how closely a model’s connectivity represents the real system. Here we argue that the data-driven probabilistic rules, widely used to build neuronal network models, may not be appropriate to represent the dynamics of the corresponding biological system. To solve this problem, we propose to use a new mathematical framework able to use sparse and limited experimental data to quantitatively reproduce the structural connectivity of biological brain networks at cellular level.

scholarly journals Static and dynamic functional connectivity supports the configuration of brain networks associated with creative cognition

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Abhishek Uday Patil ◽  
Sejal Ghate ◽  
Deepa Madathil ◽  
Ovid J. L. Tzeng ◽  
Hsu-Wen Huang ◽  
...  
Keyword(s):  
Cognitive Processes ◽  
Large Scale ◽  
Brain Networks ◽  
Blood Oxygen Level Dependent ◽  
Detection Algorithm ◽  
Brain Regions ◽  
Creative Cognition ◽  
Network Flexibility ◽  
Community Detection Algorithm ◽  
Window Approach

AbstractCreative cognition is recognized to involve the integration of multiple spontaneous cognitive processes and is manifested as complex networks within and between the distributed brain regions. We propose that the processing of creative cognition involves the static and dynamic re-configuration of brain networks associated with complex cognitive processes. We applied the sliding-window approach followed by a community detection algorithm and novel measures of network flexibility on the blood-oxygen level dependent (BOLD) signal of 8 major functional brain networks to reveal static and dynamic alterations in the network reconfiguration during creative cognition using functional magnetic resonance imaging (fMRI). Our results demonstrate the temporal connectivity of the dynamic large-scale creative networks between default mode network (DMN), salience network, and cerebellar network during creative cognition, and advance our understanding of the network neuroscience of creative cognition.

scholarly journals Psychological resilience correlates with EEG source-space brain network flexibility

2019 ◽  
Vol 3 (2) ◽  
pp. 539-550 ◽  
Author(s):  
Véronique Paban ◽  
Julien Modolo ◽  
Ahmad Mheich ◽  
Mahmoud Hassan
Keyword(s):  
Brain Networks ◽  
Brain Regions ◽  
Brain Network ◽  
Personality Testing ◽  
Functional Networks ◽  
Psychological Resilience ◽  
Full Spectrum ◽  
Sliding Windows ◽  
Resilience Scale ◽  
Network Flexibility

We aimed at identifying the potential relationship between the dynamical properties of the human functional network at rest and one of the most prominent traits of personality, namely resilience. To tackle this issue, we used resting-state EEG data recorded from 45 healthy subjects. Resilience was quantified using the 10-item Connor-Davidson Resilience Scale (CD-RISC). By using a sliding windows approach, brain networks in each EEG frequency band (delta, theta, alpha, and beta) were constructed using the EEG source-space connectivity method. Brain networks dynamics were evaluated using the network flexibility, linked with the tendency of a given node to change its modular affiliation over time. The results revealed a negative correlation between the psychological resilience and the brain network flexibility for a limited number of brain regions within the delta, alpha, and beta bands. This study provides evidence that network flexibility, a metric of dynamic functional networks, is strongly correlated with psychological resilience as assessed from personality testing. Beyond this proof-of-principle that reliable EEG-based quantities representative of personality traits can be identified, this motivates further investigation regarding the full spectrum of personality aspects and their relationship with functional networks.

scholarly journals Depression Disorder Classification of fMRI Data Using Sparse Low-Rank Functional Brain Network and Graph-Based Features

2017 ◽  
Vol 2017 ◽  
pp. 1-11 ◽  
Author(s):  
Xin Wang ◽  
Yanshuang Ren ◽  
Wensheng Zhang
Keyword(s):  
Pearson Correlation ◽  
Brain Regions ◽  
Brain Network ◽  
Classification Performance ◽  
Low Rank ◽  
Fmri Data ◽  
Healthy Controls ◽  
Functional Brain ◽  
Functional Brain Network ◽  
Depression Disorder

Study of functional brain network (FBN) based on functional magnetic resonance imaging (fMRI) has proved successful in depression disorder classification. One popular approach to construct FBN is Pearson correlation. However, it only captures pairwise relationship between brain regions, while it ignores the influence of other brain regions. Another common issue existing in many depression disorder classification methods is applying only single local feature extracted from constructed FBN. To address these issues, we develop a new method to classify fMRI data of patients with depression and healthy controls. First, we construct the FBN using a sparse low-rank model, which considers the relationship between two brain regions given all the other brain regions. Moreover, it can automatically remove weak relationship and retain the modular structure of FBN. Secondly, FBN are effectively measured by eight graph-based features from different aspects. Tested on fMRI data of 31 patients with depression and 29 healthy controls, our method achieves 95% accuracy, 96.77% sensitivity, and 93.10% specificity, which outperforms the Pearson correlation FBN and sparse FBN. In addition, the combination of graph-based features in our method further improves classification performance. Moreover, we explore the discriminative brain regions that contribute to depression disorder classification, which can help understand the pathogenesis of depression disorder.

scholarly journals Large-scale network integration in the human brain tracks temporal fluctuations in memory encoding performance

eLife ◽  
2018 ◽  
Vol 7 ◽  
Author(s):  
Ruedeerat Keerativittayayut ◽  
Ryuta Aoki ◽  
Mitra Taghizadeh Sarabi ◽  
Koji Jimura ◽  
Kiyoshi Nakahara
Keyword(s):  
Functional Connectivity ◽  
Human Brain ◽  
Large Scale ◽  
Brain Regions ◽  
Brain Network ◽  
Time Varying ◽  
Memory Encoding ◽  
Graph Metrics ◽  
Connectivity Patterns ◽  
Network States

Although activation/deactivation of specific brain regions has been shown to be predictive of successful memory encoding, the relationship between time-varying large-scale brain networks and fluctuations of memory encoding performance remains unclear. Here, we investigated time-varying functional connectivity patterns across the human brain in periods of 30–40 s, which have recently been implicated in various cognitive functions. During functional magnetic resonance imaging, participants performed a memory encoding task, and their performance was assessed with a subsequent surprise memory test. A graph analysis of functional connectivity patterns revealed that increased integration of the subcortical, default-mode, salience, and visual subnetworks with other subnetworks is a hallmark of successful memory encoding. Moreover, multivariate analysis using the graph metrics of integration reliably classified the brain network states into the period of high (vs. low) memory encoding performance. Our findings suggest that a diverse set of brain systems dynamically interact to support successful memory encoding.

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