scholarly journals Genomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan.

2021 ◽  
Author(s):  
Fumito MARUYAMA ◽  
Tetsuya Komatsu ◽  
Kenji Ohya ◽  
Atsushi Ota ◽  
Yukiko Nishiuchi ◽  
...  
Keyword(s):  
Mycobacterium Avium ◽  
Virulence Genes ◽  
Draft Genome ◽  
Mycobacterial Infection ◽  
Epidemiological Studies ◽  
Genomic Features ◽  
Source Of Infection ◽  
Potential Source ◽  
Short Palindromic Repeat ◽  
Restriction Modification

Mycobacterium avium subsp. hominissuis (MAH) is one of the most important agents causing non- tuberculosis mycobacterial infection in humans and pigs. Genome analysis on MAH of human isolates has been proceeding, however, those of pigs are limited despite its potential source of infection to human. In the current study, we obtained 30 draft genome sequences of MAH of pigs reared in Japan. The 30 draft genomes consisted of 4,848,678 _ 5,620,788 bp length, 4,652 _ 5,388 coding genes and 46 _ 75 (Med: 47) tRNAs. All isolates had restriction modification associated genes and 185 _ 222 predicted virulence genes. Two isolates had tRNA arrays and one isolate had a clustered regularly interspaced short palindromic repeat (CRISPR) region. Our results will be useful for evaluation of the ecology of MAH by providing a foundation for genome-based epidemiological studies.

Bacterial isolation and genomic DNA extraction of Mycobacterium avium from pig lymph nodes v1

2021 ◽  
Author(s):  
Tetsuya Komatsu ◽  
Kenji Ohya ◽  
Justice Opare Odoi ◽  
Shota Suganuma ◽  
Kotaro Sawai ◽  
...  
Keyword(s):  
Lymph Nodes ◽  
Dna Extraction ◽  
Mycobacterium Avium ◽  
Genome Analysis ◽  
Genomic Dna ◽  
Mycobacterial Infection ◽  
Bacterial Isolation ◽  
Genomic Dna Extraction ◽  
Source Of Infection ◽  
Potential Source

Mycobacterium avium subsp. hominissuis (MAH) is one of the most important agents causing non-tuberculosis mycobacterial infection in human and pigs. Genome analysis on MAH of human isolates has been proceeding, however, those of pigs are limited despite its potential source of infection to human. Here, we isolated MAH from pig lymph nodes or livers and obtained their genomes.

Counterintuitive increase in observed Mycobacterium avium subspecies paratuberculosis prevalence in sympatric rabbits following the introduction of paratuberculosis control measures in cattle

2018 ◽  
Vol 182 (22) ◽  
pp. 634-634 ◽  
Author(s):  
Naomi J Fox ◽  
George L Caldow ◽  
Hilary Liebeschuetz ◽  
Karen Stevenson ◽  
Michael R Hutchings
Keyword(s):  
Mycobacterium Avium ◽  
Control Strategies ◽  
Mycobacterium Avium Subspecies Paratuberculosis ◽  
Mycobacterial Infection ◽  
Control Programme ◽  
Control Measures ◽  
Wild Rabbit ◽  
Level Control ◽  
Source Of Infection ◽  
Cattle Farms

Paratuberculosis (Johne’s disease) is caused by the bacterium Mycobacterium avium subspecies paratuberculosis (Map). Achieving herd-level control of mycobacterial infection is notoriously difficult, despite widespread adoption of test-and-cull-based control strategies. The presence of infection in wildlife populations could be contributing to this difficulty. Rabbits are naturally infected with the same Map strain as cattle, and can excrete high levels in their faeces. The aim of this study is to determine if implementation of paratuberculosis control in cattle leads to a decline in Map infection levels in rabbits. An island-wide, test-and-cull-based paratuberculosis control programme was initiated on a Scottish island in 2008. In this study annual tests were obtained from 15 cattle farms, from 2008 to 2011, totalling 2609 tests. Rabbits (1564) were sampled from the 15 participating farms, from 2008 to 2011, and Map was detected by faecal culture. Map seroprevalence in cattle decreased from 16 to 7.2 per cent, while Map prevalence in rabbits increased from 10.3 to 20.3 per cent. Results indicate that efforts to control paratuberculosis in cattle do not reduce Map levels in sympatric rabbits. This adds to mounting evidence that if Map becomes established in wild rabbit populations, rabbits represent a persistent and widespread source of infection, potentially impeding livestock control strategies.

scholarly journals Draft Genome Sequence of Mycobacterium chimaera Type Strain Fl-0169

2017 ◽  
Vol 5 (8) ◽  
Author(s):  
Stacy Pfaller ◽  
Vasily Tokarev ◽  
Collin Kessler ◽  
Christopher McLimans ◽  
Vicente Gomez-Alvarez ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Mycobacterium Avium ◽  
Type Strain ◽  
Virulence Genes ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type

ABSTRACT We report here the draft genome sequence of the type strain Mycobacterium chimaera Fl-0169, a member of the Mycobacterium avium complex (MAC). M. chimaera Fl-0169T was isolated from a patient in Italy and is highly similar to strains of M. chimaera isolated in Ireland, although Fl-0169T possesses unique virulence genes.

scholarly journals Genomic diversity of Mycobacterium avium subsp. paratuberculosis: pangenomic approach for highlighting unique genomic features with newly constructed complete genomes

2021 ◽  
Vol 52 (1) ◽  
Author(s):  
Jaewon Lim ◽  
Hong-Tae Park ◽  
Seyoung Ko ◽  
Hyun-Eui Park ◽  
Gyumin Lee ◽  
...  
Keyword(s):  
Mycobacterium Avium ◽  
Phenotypic Diversity ◽  
Control Strategies ◽  
Genomic Diversity ◽  
Phenotypic Traits ◽  
Whole Genome ◽  
Genomic Features ◽  
Phenotypic Differences ◽  
Mycobacterium Avium Subsp Paratuberculosis ◽  
Type Strains

AbstractMycobacterium avium subsp. paratuberculosis (MAP) is a causative agent of Johne’s disease, which is a chronic granulomatous enteropathy in ruminants. Determining the genetic diversity of MAP is necessary to understand the epidemiology and biology of MAP, as well as establishing disease control strategies. In the present study, whole genome-based alignment and comparative analysis were performed using 40 publicly available MAP genomes, including newly sequenced Korean isolates. First, whole genome-based alignment was employed to identify new genomic structures in MAP genomes. Second, the genomic diversity of the MAP population was described by pangenome analysis. A phylogenetic tree based on the core genome and pangenome showed that the MAP was differentiated into two major types (C- and S-type), which was in keeping with the findings of previous studies. However, B-type strains were discriminated from C-type strains. Finally, functional analysis of the pangenome was performed using three virulence factor databases (i.e., PATRIC, VFDB, and Victors) to predict the phenotypic diversity of MAP in terms of pathogenicity. Based on the results of the pangenome analysis, we developed a real-time PCR technique to distinguish among S-, B- and C-type strains. In conclusion, the results of our study suggest that the phenotypic differences between MAP strains can be explained by their genetic polymorphisms. These results may help to elucidate the diversity of MAP, extending from genomic features to phenotypic traits.

scholarly journals Draft Genome Sequence of White Spot Syndrome Virus Isolated from Cultured Litopenaeus vannamei in Mexico

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Libia Zulema Rodriguez-Anaya ◽  
Jose Reyes Gonzalez-Galaviz ◽  
Ramón Casillas-Hernandez ◽  
Fernando Lares-Villa ◽  
Karel Estrada ◽  
...  
Keyword(s):  
Disease Prevention ◽  
Genome Sequence ◽  
Litopenaeus Vannamei ◽  
White Spot Syndrome Virus ◽  
Draft Genome ◽  
Epidemiological Studies ◽  
Shrimp Farming ◽  
White Spot ◽  
Molecular Diagnostic ◽  
White Spot Syndrome

The first genome sequence of a Mexican white spot syndrome virus is presented here. White spot syndrome is a shrimp pandemic virus that has devastated production in Mexico for more than 10 years. The availability of this genome will greatly aid epidemiological studies worldwide, contributing to the molecular diagnostic and disease prevention in shrimp farming.

Mycobacterial infection influences bone biomarker levels in patients with Crohn’s disease

2018 ◽  
Vol 96 (7) ◽  
pp. 662-667 ◽  
Author(s):  
Amna Naser ◽  
Ahmad Qasem ◽  
Saleh A. Naser
Keyword(s):  
Crohn’S Disease ◽  
Crohn's Disease ◽  
Mycobacterium Avium ◽  
Disease Model ◽  
Mycobacterial Infection ◽  
Undercarboxylated Osteocalcin ◽  
Healthy Cattle ◽  
The Mean ◽  
Mycobacterium Avium Subsp Paratuberculosis ◽  
Active Inflammation

Patients with Crohn’s disease (CD) have higher risk for osteoporosis following decreased level of osteocalcin. We hypothesize that active inflammation following Mycobacterium avium subsp. paratuberculosis (MAP) infection results in elevation of undercarboxylated osteocalcin (ucOC) and downregulation of active osteocalcin in CD patients and cow-disease model (Johne’s disease). In this study, we measured ucOC, active osteocalcin, and calcium levels in sera from 42 cattle (21 infected with MAP and 21 healthy cattle), 18 CD patients, and 20 controls. The level of ucOC in MAP+ bovine samples was higher than that in MAP− controls (318 ± 57.2 nmol/mL vs. 289 ± 95.8 nmol/mL, P > 0.05). Consequently, mean calcium level in bovine MAP+ was significantly higher than that in bovine-MAP− samples (9.98 ± 0.998 mg/dL vs. 7.65 ± 2.12 mg/dL, P < 0.05). Also, the level of ucOC was higher in CD-MAP+ than in CD-MAP− (561 ± 23.7 nmol/mL vs. 285 ± 19.6 nmol/mL, P < 0.05). Interestingly, the mean osteocalcin level in MAP+ bovine was lower than that in MAP− bovine (797 ± 162 pg/mL vs. 1190 ± 43 pg/mL) and it was lower in CD-MAP+ than in CD-MAP− infection (1.89 ± 0.184 ng/mL vs. 2.19 ± 0.763 ng/mL) (P < 0.05). The correlation between MAP infection and elevation of sera ucOC, reduction of active osteocalcin and increased calcium supports MAP infection role in CD and complications with osteoporosis.

IMPORTANCE OF TOOTH-BRUSH DISINFECTION IN SARS Cov-2.

2021 ◽  
pp. 1-1
Author(s):  
Akash Bhatt ◽  
Neel Gupta ◽  
Lavisha Garg
Keyword(s):  
Viral Load ◽  
Severe Acute Respiratory Syndrome ◽  
Family Members ◽  
Cross Infection ◽  
Viable Option ◽  
Source Of Infection ◽  
Potential Source

As public distribution of vaccines against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is underway, prevention of coronavirus disease 2019 (COVID-19) relies on minimizing spread. Toothbrushes are a potent source of infection as it harbours the microorganisms and increases the viral load as well. It also increases the chances of cross infection among family members. Therefore disinfecting toothbrushes after every use may be a viable option to decrease the total viral load as well as to limit the chances of cross - infection. This communication aims to focus on the fact that toothbrushes may be another potential source of infection in this pandemic, thereby this needs to be disinfected after every use and once person is recovered, it should be replaced with a new one.

scholarly journals Ultrasound scan as a potential source of nosocomial and cross-infection: a literature review

2015 ◽  
Vol 48 (5) ◽  
pp. 319-323 ◽  
Author(s):  
André Hadyme Miyague ◽  
Fernando Marum Mauad ◽  
Wellington de Paula Martins ◽  
Augusto César Garcia Benedetti ◽  
Ana Elizabeth Gomes de Melo Tavares Ferreira ◽  
...  
Keyword(s):  
Literature Review ◽  
Cost Benefit ◽  
Cross Infection ◽  
Ultrasound Scan ◽  
Benefit Ratio ◽  
Source Of Infection ◽  
Potential Source ◽  
Cost Benefit Ratio ◽  
The Cost

AbstractThe authors review the main concepts regarding the importance of cleaning/disinfection of ultrasonography probes, aiming a better comprehension by practitioners and thus enabling strategies to establish a safe practice without compromising the quality of the examination and the operator productivity. In the context of biosafety, it is imperative to assume that contact with blood or body fluids represents a potential source of infection. Thus, in order to implement cleaning/disinfection practice, it is necessary to understand the principles of infection control, to consider the cost/benefit ratio of the measures to be implemented, and most importantly, to comprehend that such measures will not only benefit the health professional and the patient, but the society as a whole.

Low Potential Virulence Associated with Mutations in the inlA and prfA Genes in Listeria monocytogenes Isolated from Raw Retail Poultry Meat

2013 ◽  
Vol 76 (1) ◽  
pp. 129-132 ◽  
Author(s):  
VICTORIA LÓPEZ ◽  
JAIME NAVAS ◽  
JOAQUÍN V. MARTÍNEZ-SUÁREZ
Keyword(s):  
Listeria Monocytogenes ◽  
Gel Electrophoresis ◽  
Virulence Genes ◽  
Pulsed Field Gel Electrophoresis ◽  
Poultry Meat ◽  
Pathogenic Potential ◽  
Molecular Serotyping ◽  
Potential Source ◽  
Raw Foods ◽  
Over Time

Packaged raw foods can represent a potential source of Listeria monocytogenes contamination when opened at home, and listeriosis is associated with the consumption of undercooked raw foods. The aim of this study was to characterize a group of L. monocytogenes strains isolated from 56 packages of raw chicken meat from a single brand in order to determine the diversity of the strains that dominate in a particular food over time, as well as their pathogenic potential. Forty (71%) samples were found to be positive for L. monocytogenes, and three isolates per sample were subjected to PCR molecular serotyping. Subtyping of 45 isolates from different manufacturing dates (n = 40) or different molecular serotype within the same sample (n = 5) identified 11 different L. monocytogenes subtypes as defined by pulsed-field gel electrophoresis and sequencing of virulence genes actA and inlA. Two of the subtypes accounted for 51% of the isolates. About 40% of isolates (three subtypes) were found to potentially present attenuated virulence because of the presence of mutations in the prfA and inlA genes.

scholarly journals Draft Genome Sequence of Plant Growth-Promoting Drought-Tolerant Bacillus sp. Strain CMAA 1363 Isolated from the Brazilian Caatinga Biome

2017 ◽  
Vol 5 (5) ◽  
Author(s):  
Vanessa Nessner Kavamura ◽  
Suikinai Nobre Santos ◽  
Rodrigo Gouvêa Taketani ◽  
Rafael Leandro Figueiredo Vasconcellos ◽  
Itamar Soares Melo
Keyword(s):  
Plant Growth ◽  
Growth Promotion ◽  
Draft Genome ◽  
Negative Effects ◽  
Genomic Features ◽  
Drought Tolerant ◽  
Caatinga Biome ◽  
Plant Growth Promoting ◽  
Growth Promoting ◽  
Plant Growth Promoting Traits

ABSTRACT The strain of Bacillus sp. CMAA 1363 was isolated from the Brazilian Caatinga biome and showed plant growth-promoting traits and ability to promote maize growth under drought stress. Sequencing revealed genes involved in stress response and plant growth promotion. These genomic features might aid in the protection of plants against the negative effects imposed by drought.

Sign in / Sign up

Export Citation Format

Share Document