scholarly journals Does the brain care about averages? A simple test.

2021 ◽  
Author(s):  
Alejandro Tlaie ◽  
Katharine A Shapcott ◽  
Paul Tiesinga ◽  
Marieke Schölvinck ◽  
Martha N Havenith

Trial-averaged metrics, e.g. in the form of tuning curves and population response vectors, are a basic and widely accepted way of characterizing neuronal activity. But how relevant are such trial-averaged responses to neuronal computation itself? Here we present a simple test to estimate whether average responses reflect aspects of neuronal activity that contribute to neuronal processing in a specific context. The test probes two assumptions inherent in the usage of average neuronal metrics: 1) Reliability: Neuronal responses repeat consistently enough across single stimulus instances that the average response template they relate to remains recognizable to downstream regions. 2) Behavioural relevance: If a single-trial response is more similar to the average template, this should make it easier for the animal to identify the correct stimulus or action. We apply this test to a large publicly available data set featuring electrophysiological recordings from 42 cortical areas in behaving mice. In this data set, we show that single-trial responses were less correlated to the average response template than one would expect if they simply represented discrete versions of the template, down-sampled to a finite number of spikes. Moreover, single-trial responses were barely stimulus-specific — they could not be clearly assigned to the average response template of one stimulus. Most importantly, better-matched single-trial responses did not predict accurate behaviour for any of the recorded cortical areas. We conclude that in this data set, average responses do not seem particularly relevant to neuronal computation in a majority of brain areas, and we encourage other researchers to apply similar tests when using trial-averaged neuronal metrics.

2021 ◽  
Vol 14 ◽  
Author(s):  
Patrycja Orlowska-Feuer ◽  
Magdalena Kinga Smyk ◽  
Anna Alwani ◽  
Marian Henryk Lewandowski

The amount and spectral composition of light changes considerably during the day, with dawn and dusk being the most crucial moments when light is within the mesopic range and short wavelength enriched. It was recently shown that animals use both cues to adjust their internal circadian clock, thereby their behavior and physiology, with the solar cycle. The role of blue light in circadian processes and neuronal responses is well established, however, an unanswered question remains: how do changes in the spectral composition of light (short wavelengths blocking) influence neuronal activity? In this study we addressed this question by performing electrophysiological recordings in image (dorsal lateral geniculate nucleus; dLGN) and non-image (the olivary pretectal nucleus; OPN, the suprachiasmatic nucleus; SCN) visual structures to determine neuronal responses to spectrally varied light stimuli. We found that removing short-wavelength from the polychromatic light (cut off at 525 nm) attenuates the most transient ON and sustained cells in the dLGN and OPN, respectively. Moreover, we compared the ability of different types of sustained OPN neurons (either changing or not their response profile to filtered polychromatic light) to irradiance coding, and show that both groups achieve it with equal efficacy. On the other hand, even very dim monochromatic UV light (360 nm; log 9.95 photons/cm2/s) evokes neuronal responses in the dLGN and SCN. To our knowledge, this is the first electrophysiological experiment supporting previous behavioral findings showing visual and circadian functions disruptions under short wavelength blocking environment. The current results confirm that neuronal activity in response to polychromatic light in retinorecipient structures is affected by removing short wavelengths, however, with type and structure – specific action. Moreover, they show that rats are sensitive to even very dim UV light.


Author(s):  
Daniel Deitch ◽  
Alon Rubin ◽  
Yaniv Ziv

AbstractNeuronal representations in the hippocampus and related structures gradually change over time despite no changes in the environment or behavior. The extent to which such ‘representational drift’ occurs in sensory cortical areas and whether the hierarchy of information flow across areas affects neural-code stability have remained elusive. Here, we address these questions by analyzing large-scale optical and electrophysiological recordings from six visual cortical areas in behaving mice that were repeatedly presented with the same natural movies. We found representational drift over timescales spanning minutes to days across multiple visual areas. The drift was driven mostly by changes in individual cells’ activity rates, while their tuning changed to a lesser extent. Despite these changes, the structure of relationships between the population activity patterns remained stable and stereotypic, allowing robust maintenance of information over time. Such population-level organization may underlie stable visual perception in the face of continuous changes in neuronal responses.


2010 ◽  
Vol 104 (1) ◽  
pp. 539-547 ◽  
Author(s):  
Andrea Insabato ◽  
Mario Pannunzi ◽  
Edmund T. Rolls ◽  
Gustavo Deco

Neurons have been recorded that reflect in their firing rates the confidence in a decision. Here we show how this could arise as an emergent property in an integrate-and-fire attractor network model of decision making. The attractor network has populations of neurons that respond to each of the possible choices, each biased by the evidence for that choice, and there is competition between the attractor states until one population wins the competition and finishes with high firing that represents the decision. Noise resulting from the random spiking times of individual neurons makes the decision making probabilistic. We also show that a second attractor network can make decisions based on the confidence in the first decision. This system is supported by and accounts for neuronal responses recorded during decision making and makes predictions about the neuronal activity that will be found when a decision is made about whether to stay with a first decision or to abort the trial and start again. The research shows how monitoring can be performed in the brain and this has many implications for understanding cognitive functioning.


Author(s):  
Pedro Tomás ◽  
IST TU Lisbon ◽  
Aleksandar Ilic ◽  
Leonel Sousa

When analyzing the neuronal code, neuroscientists usually perform extra-cellular recordings of neuronal responses (spikes). Since the size of the microelectrodes used to perform these recordings is much larger than the size of the cells, responses from multiple neurons are recorded by each micro-electrode. Thus, the obtained response must be classified and evaluated, in order to identify how many neurons were recorded, and to assess which neuron generated each spike. A platform for the mass-classification of neuronal responses is proposed in this chapter, employing data-parallelism for speeding up the classification of neuronal responses. The platform is built in a modular way, supporting multiple web-interfaces, different back-end environments for parallel computing or different algorithms for spike classification. Experimental results on the proposed platform show that even for an unbalanced data set of neuronal responses the execution time was reduced of about 45%. For balanced data sets, the platform may achieve a reduction in execution time equal to the inverse of the number of back-end computational elements.


2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Ellen G. Wann ◽  
Anirudh Wodeyar ◽  
Ramesh Srinivasan ◽  
Ron D. Frostig

AbstractStroke is a leading cause of death and the leading cause of long-term disability, but its electrophysiological basis is poorly understood. Characterizing acute ischemic neuronal activity dynamics is important for understanding the temporal and spatial development of ischemic pathophysiology and determining neuronal activity signatures of ischemia. Using a 32-microelectrode array spanning the depth of cortex, electrophysiological recordings generated for the first time a continuous spatiotemporal profile of local field potentials (LFP) and multi-unit activity (MUA) before (baseline) and directly after (0–5 h) distal, permanent MCA occlusion (pMCAo) in a rat model. Although evoked activity persisted for hours after pMCAo with minor differences from baseline, spatiotemporal analyses of spontaneous activity revealed that LFP became spatially and temporally synchronized regardless of cortical depth within minutes after pMCAo and extended over large parts of cortex. Such enhanced post-ischemic synchrony was found to be driven by increased bursts of low multi-frequency oscillations and continued throughout the acute ischemic period whereas synchrony measures minimally changed over the same recording period in surgical sham controls. EEG recordings of a similar frequency range have been applied to successfully predict stroke damage and recovery, suggesting clear clinical relevance for our rat model.


2019 ◽  
Vol 122 (1) ◽  
pp. 203-231 ◽  
Author(s):  
Pär Halje ◽  
Ivani Brys ◽  
Juan J. Mariman ◽  
Claudio da Cunha ◽  
Romulo Fuentes ◽  
...  

Cortico-basal ganglia circuits are thought to play a crucial role in the selection and control of motor behaviors and have also been implicated in the processing of motivational content and in higher cognitive functions. During the last two decades, electrophysiological recordings in basal ganglia circuits have shown that several disease conditions are associated with specific changes in the temporal patterns of neuronal activity. In particular, synchronized oscillations have been a frequent finding suggesting that excessive synchronization of neuronal activity may be a pathophysiological mechanism involved in a wide range of neurologic and psychiatric conditions. We here review the experimental support for this hypothesis primarily in relation to Parkinson’s disease but also in relation to dystonia, essential tremor, epilepsy, and psychosis/schizophrenia.


2011 ◽  
Vol 106 (6) ◽  
pp. 3216-3229 ◽  
Author(s):  
L. Hu ◽  
M. Liang ◽  
A. Mouraux ◽  
R. G. Wise ◽  
Y. Hu ◽  
...  

Across-trial averaging is a widely used approach to enhance the signal-to-noise ratio (SNR) of event-related potentials (ERPs). However, across-trial variability of ERP latency and amplitude may contain physiologically relevant information that is lost by across-trial averaging. Hence, we aimed to develop a novel method that uses 1) wavelet filtering (WF) to enhance the SNR of ERPs and 2) a multiple linear regression with a dispersion term (MLRd) that takes into account shape distortions to estimate the single-trial latency and amplitude of ERP peaks. Using simulated ERP data sets containing different levels of noise, we provide evidence that, compared with other approaches, the proposed WF+MLRd method yields the most accurate estimate of single-trial ERP features. When applied to a real laser-evoked potential data set, the WF+MLRd approach provides reliable estimation of single-trial latency, amplitude, and morphology of ERPs and thereby allows performing meaningful correlations at single-trial level. We obtained three main findings. First, WF significantly enhances the SNR of single-trial ERPs. Second, MLRd effectively captures and measures the variability in the morphology of single-trial ERPs, thus providing an accurate and unbiased estimate of their peak latency and amplitude. Third, intensity of pain perception significantly correlates with the single-trial estimates of N2 and P2 amplitude. These results indicate that WF+MLRd can be used to explore the dynamics between different ERP features, behavioral variables, and other neuroimaging measures of brain activity, thus providing new insights into the functional significance of the different brain processes underlying the brain responses to sensory stimuli.


2019 ◽  
Author(s):  
Kuo‐Hua Huang ◽  
Peter Rupprecht ◽  
Michael Schebesta ◽  
Fabrizio Serluca ◽  
Kyohei Kitamura ◽  
...  

SummaryIntelligent behavior requires a comparison between the predicted and the actual consequences of behavioral actions. According to the theory of predictive processing, this comparison relies on a neuronal error signal that reflects the mismatch between an internal prediction and sensory input. Inappropriate error signals may generate pathological experiences in neuropsychiatric conditions. To examine the processing of sensorimotor prediction errors across different telencephalic brain areas we optically measured neuronal activity in head-fixed, adult zebrafish in a virtual reality. Brief perturbations of visuomotor feedback triggered distinct changes in swimming behavior and different neuronal responses. Neuronal activity reflecting sensorimotor mismatch, rather than sensory input or motor output alone, was prominent throughout multiple forebrain areas. This activity preceded and predicted the transition in motor behavior. Error signals were altered in specific forebrain regions by a mutation in the autism-related gene shank3b. Predictive processing is therefore a widespread phenomenon that may contribute to disease phenotypes.


2019 ◽  
Author(s):  
Meret Branscheidt ◽  
Naveed Ejaz ◽  
Jing Xu ◽  
Mario Widmer ◽  
Michelle D. Harran ◽  
...  

AbstractCortical reorganization has been suggested as mechanism for recovery after stroke. It has been proposed that a form of cortical reorganization (changes in functional connectivity between brain areas) can be assessed with resting-state fMRI. Here we report the largest longitudinal data-set in terms of overall sessions in 19 patients with subcortical stroke and 11 controls. Patients were imaged up to 5 times over one year. We found no evidence for post-stroke cortical reorganization despite substantial behavioral recovery. These results could be construed as questioning the value of resting-state imaging. Here we argue instead that they are consistent with other emerging reasons to challenge the idea of motor recovery-related cortical reorganization post-stroke when conceived as changes in connectivity between cortical areas.


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