Genetic control of phenotypic plasticity in Asian cultivated and wild rice in response to nutrient and density changes

Genome ◽  
2010 ◽  
Vol 53 (3) ◽  
pp. 211-223 ◽  
Author(s):  
Hiroyuki Shimizu ◽  
Masamichi Maruoka ◽  
Naofumi Ichikawa ◽  
Akhil Ranjan Baruah ◽  
Naohiro Uwatoko ◽  
...  

Phenotypic plasticity is an adaptive mechanism adopted by plants in response to environmental heterogeneity. Cultivated and wild species adapt in contrasting environments; however, it is not well understood how genetic changes responsible for phenotypic plasticity were involved in crop evolution. We investigated the genetic control of phenotypic plasticity in Asian cultivated ( Oryza sativa ) and wild rice ( O. rufipogon ) under 5 environmental conditions (2 nutrient and 3 density levels). Quantitative trait locus (QTL) analysis was conducted for traits affecting plant architecture and biomass production. By analysing the phenotypic means, QTLs of large effects were detected as a cluster on chromosome 7 under all the environmental conditions investigated; this might have contributed to transitions of plant architecture during domestication, as reported previously. Multiple QTLs of plasticity were also found within this QTL cluster, demonstrating that allele-specific environmental sensitivity might control plasticity. Furthermore, QTLs controlling plasticity without affecting phenotypic means were also identified. The mode of action and direction of allele effects of plasticity QTLs varied depending on the traits and environmental signals. These findings confirmed that cultivated and wild rice show distinctive genetic differentiation for phenotypic plasticity, which might have contributed to adaptation under contrasting environmental heterogeneity during the domestication of rice.

2013 ◽  
Vol 59 (4) ◽  
pp. 526-536 ◽  
Author(s):  
Matthew R.J. Morris ◽  
Sean M. Rogers

Abstract Most species evolve within fluctuating environments, and have developed adaptations to meet the challenges posed by environmental heterogeneity. One such adaptation is phenotypic plasticity, or the ability of a single genotype to produce multiple environmentally-induced phenotypes. Yet, not all plasticity is adaptive. Despite the renewed interest in adaptive phenotypic plasticity and its consequences for evolution, much less is known about maladaptive plasticity. However, maladaptive plasticity is likely an important driver of phenotypic similarity among populations living in different environments. This paper traces four strategies for overcoming maladaptive plasticity that result in phenotypic similarity, two of which involve genetic changes (standing genetic variation, genetic compensation) and two of which do not (standing epigenetic variation, plastic compensation). Plastic compensation is defined as adaptive plasticity overcoming maladaptive plasticity. In particular, plastic compensation may increase the likelihood of genetic compensation by facilitating population persistence. We provide key terms to disentangle these aspects of phenotypic plasticity and introduce examples to reinforce the potential importance of plastic compensation for understanding evolutionary change.


Author(s):  
Juha Merilä ◽  
Ary A. Hoffmann

Changing climatic conditions have both direct and indirect influences on abiotic and biotic processes and represent a potent source of novel selection pressures for adaptive evolution. In addition, climate change can impact evolution by altering patterns of hybridization, changing population size, and altering patterns of gene flow in landscapes. Given that scientific evidence for rapid evolutionary adaptation to spatial variation in abiotic and biotic environmental conditions—analogous to that seen in changes brought by climate change—is ubiquitous, ongoing climate change is expected to have large and widespread evolutionary impacts on wild populations. However, phenotypic plasticity, migration, and various kinds of genetic and ecological constraints can preclude organisms from evolving much in response to climate change, and generalizations about the rate and magnitude of expected responses are difficult to make for a number of reasons. First, the study of microevolutionary responses to climate change is a young field of investigation. While interest in evolutionary impacts of climate change goes back to early macroevolutionary (paleontological) studies focused on prehistoric climate changes, microevolutionary studies started only in the late 1980s. The discipline gained real momentum in the 2000s after the concept of climate change became of interest to the general public and funding organizations. As such, no general conclusions have yet emerged. Second, the complexity of biotic changes triggered by novel climatic conditions renders predictions about patterns and strength of natural selection difficult. Third, predictions are complicated also because the expression of genetic variability in traits of ecological importance varies with environmental conditions, affecting expected responses to climate-mediated selection. There are now several examples where organisms have evolved in response to selection pressures associated with climate change, including changes in the timing of life history events and in the ability to tolerate abiotic and biotic stresses arising from climate change. However, there are also many examples where expected selection responses have not been detected. This may be partly explainable by methodological difficulties involved with detecting genetic changes, but also by various processes constraining evolution. There are concerns that the rates of environmental changes are too fast to allow many, especially large and long-lived, organisms to maintain adaptedness. Theoretical studies suggest that maximal sustainable rates of evolutionary change are on the order of 0.1 haldanes (i.e., phenotypic standard deviations per generation) or less, whereas the rates expected under current climate change projections will often require faster adaptation. Hence, widespread maladaptation and extinctions are expected. These concerns are compounded by the expectation that the amount of genetic variation harbored by populations and available for selection will be reduced by habitat destruction and fragmentation caused by human activities, although in some cases this may be countered by hybridization. Rates of adaptation will also depend on patterns of gene flow and the steepness of climatic gradients. Theoretical studies also suggest that phenotypic plasticity (i.e., nongenetic phenotypic changes) can affect evolutionary genetic changes, but relevant empirical evidence is still scarce. While all of these factors point to a high level of uncertainty around evolutionary changes, it is nevertheless important to consider evolutionary resilience in enhancing the ability of organisms to adapt to climate change.


Forests ◽  
2021 ◽  
Vol 12 (7) ◽  
pp. 892
Author(s):  
Valda Gudynaitė-Franckevičienė ◽  
Alfas Pliūra

To have a cleaner environment, good well-being, and improve the health of citizens it is necessary to expand green urban and suburban areas using productive and adapted material of tree species. The quality of urban greenery, resistance to negative climate change factors and pollution, as well as efficiency of short-rotation forestry in suburban areas, depends primarily on the selection of hybrids and clones, suitable for the local environmental conditions. We postulate that ecogenetic response, phenotypic plasticity, and genotypic variation of hybrid poplars (Populus L.) grown in plantations are affected not only by the peculiarities of hybrids and clones, but also by environmental conditions of their vegetative propagation. The aim of the present study was to estimate growth and biochemical responses, the phenotypic plasticity, genotypic variation of adaptive traits, and genetically regulated adaptability of Populus hybrids in field trials which may be predisposed by the simulated contrasting temperature conditions at their vegetative propagation phase. The research was performed with the 20 cultivars and experimental clones of one intraspecific cross and four different interspecific hybrids of poplars propagated under six contrasting temperature regimes in phytotron. The results suggest that certain environmental conditions during vegetative propagation not only have a short-term effect on tree viability and growth, but also can help to adapt to climate change conditions and grow successfully in the long-term. It was found that tree growth and biochemical traits (the chlorophyll A and B, pigments content and the chlorophyll A/B ratio) of hybrid poplar clones grown in field trials, as well as their traits’ genetic parameters, were affected by the rooting-growing conditions during vegetative propagation phase. Hybrids P. balsamifera × P. trichocarpa, and P. trichocarpa × P. trichocarpa have shown the most substantial changes of biochemical traits across vegetative propagation treatments in field trial. Rooting-growing conditions during vegetative propagation had also an impact on coefficients of genotypic variation and heritability in hybrid poplar clones when grown in field trials.


2014 ◽  
Vol 127 (7) ◽  
pp. 1607-1624 ◽  
Author(s):  
Lancelot Maphosa ◽  
Peter Langridge ◽  
Helen Taylor ◽  
Boris Parent ◽  
Livinus C. Emebiri ◽  
...  

2020 ◽  
Vol 84 (4) ◽  
pp. 393-401
Author(s):  
Yamila Gonzalez Giorgis ◽  
María Cruz Sueiro ◽  
Federico Márquez

Understanding phenotypic plasticity of species at different spatial scales is vital in the current context of an increasing pace of environmental changes. Through this knowledge, it is possible to predict their potential to adapt and/or evolve in face of new environmental conditions such as climate change, and/or to understand their ecological range expansion. In Patagonian rocky salt-marshes, one of the most abundant invertebrate species is the scorched mussel Perumytilus purpuratus. In this system, this mussel can be found inhabiting both vegetated and non-vegetated patches, which differ in critical environmental conditions. We performed a field study evaluating whether mussels growing in vegetated patches differ in shell shape from those growing in adjacent non-vegetated patches. We sampled individuals from both patch types and assessed their shell shape and size using geometric morphometrics. The results showed that mussels from vegetated patches had shells that were more dorsoventrally expanded, anterodorsally restricted and globose in shape than those from non-vegetated patches, which showed the opposite traits resulting in a more elongated shell. The differences found could be driven by the different conditions of temperature, desiccation rate, wave action and population density to which mussels are exposed in each patch type. These results revealed the striking phenotypic plasticity of shell form of this native species at a fine-grained scale, which could be one of the explanations for its success in its ecological range expansion.


2013 ◽  
Vol 152 (6) ◽  
pp. 873-884 ◽  
Author(s):  
R. MOHAMMADI

SUMMARYRainfall and temperature are unpredictable in Mediterranean environments, which results in inconsistent environmental conditions for crop growth and a critical source of uncertainty for farmers and growers. The objectives of the present study were to: (i) quantify and compare the plasticity of durum breeding lines, a modern cultivar and landraces on the basis of yield and agronomic traits and (ii) study associations between plasticity of yield and plasticity of agronomic and phenological traits. Plasticity was quantified using linear models for 11 durum breeding lines, one modern cultivar and two landraces grown in 21 diversified environments. The results showed that the effects due to environment, genotype and genotype×environment (G×E) interaction were significant, which indicates the existence of differences among genotypes for plasticity. Yield ranged from 1939 to 2419 kg/ha across environments and the range of plasticity was 0·66–1·13. The breeding lines and the modern cultivar had higher grain yields compared with the landraces at the same level of plasticity. The landraces with below-average plasticity in yield were characterized as tall in stature and late in heading and maturity, whereas the breeding lines and modern cultivar with above-average plasticity in yield were early in heading and maturity, semi-dwarf and high-yielding, which indicates the success in breeding the materials for unpredictable environmental conditions. In conclusion, yield plasticity was associated with yield improvement and high yield plasticity tends to associate with earliness, shorter plants and low grain weight.


2019 ◽  
Vol 286 (1897) ◽  
pp. 20182625 ◽  
Author(s):  
Richard Svanbäck ◽  
Frank Johansson

Increased eye size in animals results in a larger retinal image and thus improves visual acuity. Thus, larger eyes should aid both in finding food as well as detecting predators. On the other hand, eyes are usually very conspicuous and several studies have suggested that eye size is associated with predation risk. However, experimental evidence is scant. In this study, we address how predation affects variation in eye size by performing two experiments using Eurasian perch juveniles as prey and either larger perch or pike as predators. First, we used large outdoor tanks to compare selection due to predators on relative eye size in open and artificial vegetated habitats. Second, we studied the effects of both predation risk and resource levels on phenotypic plasticity in relative eye size in indoor aquaria experiments. In the first experiment, we found that habitat altered selection due to predators, since predators selected for smaller eye size in a non-vegetated habitat, but not in a vegetated habitat. In the plasticity experiment, we found that fish predators induced smaller eye size in males, but not in females, while resource levels had no effect on eye size plasticity. Our experiments provide evidence that predation risk could be one of the driving factors behind variation in eye size within species.


2010 ◽  
Vol 365 (1552) ◽  
pp. 2581-2590 ◽  
Author(s):  
J. J. Emerson ◽  
Wen-Hsiung Li

The regulation of gene expression is an important determinant of organismal phenotype and evolution. However, the widespread recognition of this fact occurred long after the synthesis of evolution and genetics. Here, we give a brief sketch of thoughts regarding gene regulation in the history of evolution and genetics. We then review the development of genome-wide studies of gene regulatory variation in the context of the location and mode of action of the causative genetic changes. In particular, we review mapping of the genetic basis of expression variation through expression quantitative trait locus studies and measuring the cis / trans component of expression variation in allele-specific expression studies. We conclude by proposing a systematic integration of ideas that combines global mapping studies, cis / trans tests and modern population genetics methodologies, in order to directly estimate the forces acting on regulatory variation within and between species.


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