Phylogenetic differentiation and taxonomic consequences in the Saurodactylus brosseti species complex (Squamata: Sphaerodactylidae), with description of four new species

Zootaxa ◽  
2019 ◽  
Vol 4674 (4) ◽  
pp. 401-425
Author(s):  
SOHEILA JAVANMARDI ◽  
SVEN VOGLER ◽  
ULRICH JOGER
Keyword(s):  
Species Complex ◽  
Morphological Characteristics ◽  
Color Pattern ◽  
Distribution Area ◽  
12S Rrna ◽  
Ecological Traits ◽  
Acacia Species ◽  
Mitochondrial Markers ◽  
Dichotomous Key ◽  
High Level

We divide Saurodactylus brosseti into five species, based on molecular and morphological characteristics. Phylogenetic analysis of two mitochondrial markers (ND4 and 12S rRNA) reveals five separately evolving lineages (clades) in the S. brosseti species complex. Each can be assigned to a particular geographical range within the distribution area in Morocco: North, South, Anti-Atlas, East and Southeast. A dichotomous key for all species within the genus Saurodactylus is presented. Despite the high level of color pattern variation among and within the northern, southern, Anti-Atlas and eastern clades, the southeastern lineage shows a unique coloration which is not found in other clades. The ecological traits of the southeastern clade seem to differ from those of the other four lineages since it is basically associated with Acacia species. Like the relictual ecosystem characterized by these trees, it appears to be highly threatened by extinction. 

scholarly journals Redescription of Astyanax goyacensis Eigenmann, 1908 (Ostariophysi: Characiformes: Characidae)

2009 ◽  
Vol 7 (3) ◽  
pp. 371-376 ◽  
Author(s):  
Valdener Garutti ◽  
Francisco Langeani
Keyword(s):  
Lateral Line ◽  
Species Complex ◽  
Color Pattern ◽  
Caudal Peduncle ◽  
Caudal Fin ◽  
Black Stripe ◽  
Conspicuous Feature ◽  
Fin Rays ◽  
Shape Pattern ◽  
Eye Diameter

Astyanax goyacensis Eigenmann, 1908 is redescribed based on the holotype and 25 topotypes. The species belongs to the A. bimaculatus species complex, sharing with those species a black, horizontally ovate, humeral spot (the most conspicuous feature of this complex), two diffuse vertical brown bars in the humeral area (the first through humeral spot and the second 2-3 scales behind), and black medium caudal-fin rays. Furthermore, A. goyacensis possesses a black stripe extending along midlateral body portion, more conspicuous in alcohol preserved specimens. These characteristics allow its inclusion in the putative "black lateral stripe" sub-group of A. bimaculatus species complex. From the species of this complex it differs by the black lateral stripe shape, pattern of chromatophores on the flank, coloration of the caudal fin, scales on the lateral line, branched rays on anal fin, eye diameter, and caudal peduncle depth. Comments about the color pattern in Astyanax bimaculatus species complex are added.

scholarly journals Microglanis carlae, a new species of bumblebee catfish (Siluriformes: Pseudopimelodidae) from the río Paraguay basin in Paraguay

2008 ◽  
Vol 6 (3) ◽  
pp. 425-432 ◽  
Author(s):  
Héctor S. Vera Alcaraz ◽  
Weferson J. da Graça ◽  
Oscar A. Shibatta
Keyword(s):  
New Species ◽  
Species Complex ◽  
Anterior Margin ◽  
Color Pattern ◽  
Caudal Peduncle ◽  
Dorsal Fin ◽  
Fin Ray ◽  
Pectoral Spine ◽  
Adipose Fin ◽  
A New Species

Microglanis carlae, new species, is described from the río Paraguay basin and distinguished from its congeners by the following combination of characters: paired and anal fins mottled or with thin faint bands, trunk with dark-brown saddles, anterior margin of pectoral spine with serrations retrorse proximally and antrorse distally, tip of pectoral spine as a distinct bony point, continuous portion of lateral line reaching vertical through last dorsal-fin ray, caudal peduncle with irregularly shaped, faint to dark blotch, maxillary barbel surpassing vertical through dorsal-spine origin, and dark bar on posterior flank continuous from base of adipose fin to that of anal fin. The new species is included in the Microglanis parahybae species complex on the basis of color pattern.

scholarly journals Current Classification and Diversity of Fusarium Species Complex, the Causal Pathogen of Fusarium Wilt Disease of Banana in Malaysia

Agronomy ◽  
2021 ◽  
Vol 11 (10) ◽  
pp. 1955
Author(s):  
Anysia Hedy Ujat ◽  
Ganesan Vadamalai ◽  
Yukako Hattori ◽  
Chiharu Nakashima ◽  
Clement Kiing Fook Wong ◽  
...  
Keyword(s):  
Fusarium Oxysporum ◽  
Fusarium Wilt ◽  
Species Complex ◽  
Phylogenetic Trees ◽  
Fusarium Species ◽  
Morphological Characteristics ◽  
Pathogenicity Test ◽  
Fusarium Spp ◽  
Specific Primers ◽  
Fusarium Oxysporum Species Complex

The re-emergence of the Fusarium wilt caused by Fusarium odoratissimum (F. odoratissimum) causes global banana production loss. Thirty-eight isolates of Fusarium species (Fusarium spp.) were examined for morphological characteristics on different media, showing the typical Fusarium spp. The phylogenetic trees of Fusarium isolates were generated using the sequences of histone gene (H3) and translation elongation factor gene (TEF-1α). Specific primers were used to confirm the presence of F. odoratissimum. The phylogenetic trees showed the rich diversity of the genus Fusarium related to Fusarium wilt, which consists of F. odoratissimum, Fusarium grosmichelii, Fusarium sacchari, and an unknown species of the Fusarium oxysporum species complex. By using Foc-TR4 specific primers, 27 isolates were confirmed as F. odoratissimum. A pathogenicity test was conducted for 30 days on five different local cultivars including, Musa acuminata (AAA, AA) and Musa paradisiaca (AAB, ABB). Although foliar symptoms showed different severity of those disease progression, vascular symptoms of the inoculated plantlet showed that infection was uniformly severe. Therefore, it can be concluded that the Fusarium oxysporum species complex related to Fusarium wilt of banana in Malaysia is rich in diversity, and F. odoratissimum has pathogenicity to local banana cultivars in Malaysia regardless of the genotype of the banana plants.

scholarly journals Morphological evaluation of common bean diversity in Bosnia and Herzegovina using the discriminant analysis of principal components (DAPC) multivariate method

Genetika ◽  
2013 ◽  
Vol 45 (3) ◽  
pp. 963-977 ◽  
Author(s):  
Jasmin Grahic ◽  
Fuad Gasi ◽  
Mirsad Kurtovic ◽  
Lutvija Karic ◽  
Mirha Djikic ◽  
...  
Keyword(s):  
Discriminant Analysis ◽  
Common Bean ◽  
Bosnia And Herzegovina ◽  
Principal Components ◽  
Morphological Characteristics ◽  
Principal Component ◽  
Discriminant Functions ◽  
Factor Loadings ◽  
Geographical Regions ◽  
High Level

In order to analyze morphological characteristics of locally cultivated common bean landraces from Bosnia and Herzegovina (B&H), thirteen quantitative and qualitative traits of 40 P. vulgaris accessions, collected from four geographical regions (Northwest B&H, Northeast B&H, Central B&H and Sarajevo) and maintained at the Gene bank of the Faculty of Agriculture and Food Sciences in Sarajevo, were examined. Principal component analysis (PCA) showed that the proportion of variance retained in the first two principal components was 54.35%. The first principal component had high contributing factor loadings from seed width, seed height and seed weight, whilst the second principal component had high contributing factor loadings from the analyzed traits seed per pod and pod length. PCA plot, based on the first two principal components, displayed a high level of variability among the analyzed material. The discriminant analysis of principal components (DAPC) created 3 discriminant functions (DF), whereby the first two discriminant functions accounted for 90.4% of the variance retained. Based on the retained DFs, DAPC provided group membership probabilities which showed that 70% of the accessions examined were correctly classified between the geographically defined groups. Based on the taxonomic distance, 40 common bean accessions analyzed in this study formed two major clusters, whereas two accessions Acc304 and Acc307 didn?t group in any of those. Acc360 and Acc362, as well as Acc324 and Acc371 displayed a high level of similarity and are probably the same landrace. The present diversity of Bosnia and Herzegovina?s common been landraces could be useful in future breeding programs.

A Simulation System of Anti-Ship Missile Path Planning Oriented Ship Formation

2012 ◽  
Vol 532-533 ◽  
pp. 645-649
Author(s):  
Gang Liu ◽  
Song Yang Lao ◽  
Lv Lin Hou ◽  
Can Yuan
Keyword(s):  
Path Planning ◽  
Time Management ◽  
Implementation Process ◽  
Simulation System ◽  
Distribution Area ◽  
High Level Architecture ◽  
Static Structure ◽  
Simulation Strategy ◽  
Tactical Decision ◽  
High Level

According to analysis of relationship among fire distribution, area division and path planning, the thought of trinity tactical decision of surface ships formation missile path planning (SFMPP) is put forward. Expandable open simulation architecture is designed and established based on high level architecture HLA. In order to describe simulation requirement, the static structure model and dynamic behavior model were designed based on UML. Based on HLA/RTI specification, federation’s FOM/SOM is designed and developed. The implementation process of simulation system is expatiates, including simulation strategy, time management, modeling and the federates’ implementation process. The realization of SFMPP simulation system provides a reference trial platform for tactical application argumentation and armament development.

Phylogenetics and phylogeography of a long-legged harvestman (Arachnida : Opiliones) in the Brazilian Atlantic Rain Forest reveals poor dispersal, low diversity and extensive mitochondrial introgression

2015 ◽  
Vol 29 (4) ◽  
pp. 386 ◽  
Author(s):  
Cibele Bragagnolo ◽  
Ricardo Pinto-da-Rocha ◽  
Manuel Antunes ◽  
Ronald M. Clouse
Keyword(s):  
Rain Forest ◽  
Species Complex ◽  
Sequence Data ◽  
Historical Event ◽  
12S Rrna ◽  
Atlantic Rain Forest ◽  
Effective Population ◽  
Narrow Region ◽  
Low Genetic Diversity ◽  
Mitochondrial Introgression

We used DNA sequence data to test the morphology-based taxonomy and examine the biogeography of the Brazilian Atlantic Rain Forest genus Promitobates. Most species are well differentiated morphologically, and a previous morphological phylogeny recovered the genus as monophyletic. However, some of these species have overlapping geographical distributions and considerable intraspecific variation, perhaps representing a species complex. Mitochondrial (12S rRNA and COI) and nuclear (ITS2 and 28S) genes were sequenced from 132 specimens collected from 27 localities. The results are consistent with significant mitochondrial introgression among the species P. ornatus, P. hatschbachi, P. lager, P. bellus and P. intermedius (the ‘P. ornatus species complex’), with one specimen identified as a hybrid between P. nigripes and this complex. A phylogeographic study of the complex was conducted using mitochondrial haplotypes. This revealed remarkably poor dispersal among populations, with only one case of a shared haplotype, and very low genetic diversity. The phylogeny showed a clear break between populations on either side of a narrow region of forest, suggesting an important historical event separated these lineages in the genus. The analyses also pointed to population breaks that date back several millions of years or extremely small effective population sizes, depending on the mutation rate.

Three new species of Bathysciola Jeannel, 1910 (Leiodidae, Cholevinae, Leptodirini) from caves in Central Italy, comparing morphological taxonomy with molecular phylogeny

2018 ◽  
Vol 49 (4) ◽  
pp. 409-442 ◽  
Author(s):  
Leonardo Latella ◽  
Valerio Sbordoni ◽  
Giuliana Allegrucci
Keyword(s):  
Geographic Distribution ◽  
Phylogenetic Signal ◽  
Central Italy ◽  
Morphological Characters ◽  
Species Group ◽  
Distribution Area ◽  
12S Rrna ◽  
Historical Processes ◽  
Italian Apennines ◽  
Three New Species

The genus Bathysciola is widely distributed in the northern Mediterranean region, although its range extends east to the Caucasus and Iran. More than 130 species belonging to this genus are actually known in the whole geographic distribution area and 45 species are distributed in continental and insular Italy. The species belonging to the Bathysciola sisernica Cerruti and Patrizi, 1952 species group occur in the Central-Southern Italian Apennines and Pre-Apennines. This group consists of seven species, four of which (B. sisernica, B. delayi Latella and Rampini, 1994, B. rampinii Latella, 2002, B. sbordoni Rampini and Latella, 1993) were already known to science and three are described herein, Bathysciola fabiolae sp. nov., Bathysciola octaviani sp. nov. , and Bathysciola valeriae sp. nov., markedly increasing the knowledge on the distribution of this genus in Central Italy. A morphological analysis was carried out based on diagnostic characters usually used to distinguish different taxa, and including both genitalia and external traits. Based on morphological characters, we reconstructed the phylogeny of this group of species, comparing them with the species belonging to other phyletic lineages, such as B. derosasi Jeannel, 1914, B. georgi Cerruti, Patrizi, 1952, B. vignai Sbordoni and Rampini, 1978, and B. sarteanensis sarteanensis (Bargagli, 1870). Results suggested that morphological traits show a clear taxonomic signal but a poor phylogenetic signal. To better understand the relationships within this group of species, we performed a molecular analysis by sequencing three mitochondrial genes, 12S rRNA, 16S rRNA, partially sequenced and the entire gene of COI. Molecular markers were used to infer phylogenetic relationships among the Bathysciola sisernica species group and to reconstruct the historical processes that shaped their current geographic distribution. Results showed that these species became isolated in very ancient times, showing very high genetic differentiation.

A revision of the western North Pacific swellsharks, genus Cephaloscyllium Gill 1862 (Chondrichthyes: Carcharhiniformes: Scyliorhinidae), including descriptions of two new species

Zootaxa ◽  
2008 ◽  
Vol 1872 (1) ◽  
pp. 1 ◽  
Author(s):  
JAYNA A. SCHAAF-DA SILVA ◽  
DAVID A. EBERT
Keyword(s):  
New Species ◽  
North Pacific ◽  
Western North Pacific ◽  
Maximum Size ◽  
Color Pattern ◽  
Additional Species ◽  
Dorsal Fin ◽  
Dichotomous Key ◽  
Two New Species ◽  
Mouth Size

The genus Cephaloscyllium Gill 1862 (Chondrichthyes, Carcharhiniformes, Scyliorhinidae) until recently had only two species recognized, C. isabellum [= C. umbratile (Jordan & Fowler 1903)] and C. fasciatum Chan 1966, from the western North Pacific (WNP), with one dubious species, C. formosanum, having been described by Teng in 1962. Recently, three additional species were described, C. circulopullum Yano et al. 2005, C. sarawakensis Yano et al. 2005, and C. parvum Inoue & Nakaya 2006 from this region. Here we present a revision of this genus for the WNP, including redescriptions of C. fasciatum and C. umbratile based on the holotypes, a re-examination of the recently described species, and descriptions of two new species from Taiwan. Cephaloscyllium umbratile can be distinguished from its congeners based on maximum size, length of first dorsal-fin base, anal–caudal space, and dorsal–caudal space. We conclude, based on a comparison of C. parvum and C. sarawakensis, that the former is a junior synonym of the latter species. The two new Taiwanese species can be separated from other WNP species by color pattern, shape of the anterior nasal flap, anal and dorsal-fin size, internarial width, and mouth size. Finally, we present a revised dichotomous key to the WNP Cephaloscyllium recognizing six contemporary taxa: C. circulopullum, C. fasciatum, C. sarawakensis, C. umbratile, C. pardelotum sp. nov. and C. maculatum sp. nov.

Molecular phylogeny of the Fusarium solani species complex (FSSC) isolated from soils in Iran

Botany ◽  
2014 ◽  
Vol 92 (11) ◽  
pp. 815-820 ◽  
Author(s):  
Khosrow Chehri
Keyword(s):  
Dna Sequences ◽  
Fusarium Solani ◽  
Species Complex ◽  
Agricultural Soils ◽  
Sequence Data ◽  
Morphological Characteristics ◽  
Taxonomic Status ◽  
Its Region ◽  
Phylogenetic Study ◽  
Fusarium Solani Species Complex

Members of Fusarium solani species complex (FSSC) are frequently isolated from soils, food, feeds, trees, and to some extent from humans and other animals. The taxonomic status of these fungi is being revised but no attempt has been made to identify those isolated in Iran, a mountainous country with a high biodiversity. The objective of the present research was to study the phylogenetic diversity of FSSC strains recovered from soils in Iran by analyzing morphological characteristics and DNA sequences. A total of 65 strains belonging to the FSSC were recovered from agricultural soils in western Iran. Based on differences in their morphological characters, 25 strains were selected for phylogenetic analysis employing translation elongation factor-1α (tef1) and internal transcribed spacer (ITS) region sequences. Comparisons of DNA sequence data revealed that all isolates belonged to Fusarium falciforme, Fusarium keratoplasticum, Fusarium petroliphilum, the unnamed species FSSC 5, and unknown species of Fusarium, which represents a new lineage within members of Clade 3. Based on morphological features and phylogenetic study, F. keratoplasticum and F. petroliphilum were reported for the first time in Iran.

Relationships of scincid lizards (Mabuya spp.) from the islands of the Gulf of Guinea based on mtDNA sequence data

2005 ◽  
Vol 26 (4) ◽  
pp. 467-473 ◽  
Author(s):  
José Jesus ◽  
D. James Harris ◽  
António Brehm
Keyword(s):  
16S Rrna ◽  
Species Complex ◽  
Sequence Data ◽  
Mitochondrial Gene ◽  
12S Rrna ◽  
Gulf Of Guinea ◽  
Recent Proposal ◽  
Genetic Lineages ◽  
Sao Tome And Principe ◽  
Mtdna Sequence

AbstractRelationships of Mabuya lizards from the islands of the Gulf of Guinea where estimated using partial 12S rRNA, 16S rRNA and cytochrome b mitochondrial gene sequences. Mabuya maculilabris from São Tomé and Principe are discreet monophyletic units, highly divergent from each other and from mainland populations, indicating M. maculilabris may be a species complex. Mabuya affinis from Principe is similarly distinct from mainland populations of this species. The relationships of Mabuya ozorii from Annobon are unclear, but the three species in the Gulf of Guinea islands are not closely related, indicating multiple independent colonization events. The recent proposal to partition Mabuya into four genera is premature, since at least five distinct genetic lineages can be identified.

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