scholarly journals Glacier ice archives nearly 15,000-year-old microbes and phages

Microbiome ◽  
2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Zhi-Ping Zhong ◽  
Funing Tian ◽  
Simon Roux ◽  
M. Consuelo Gazitúa ◽  
Natalie E. Solonenko ◽  
...  
Keyword(s):  
Climate Change ◽  
Ice Core ◽  
Ice Cores ◽  
Single Species ◽  
Amplicon Sequencing ◽  
Future Climate Change ◽  
Climate Conditions ◽  
Glacier Ice ◽  
Sampling Procedures ◽  
Functional Genome

Abstract Background Glacier ice archives information, including microbiology, that helps reveal paleoclimate histories and predict future climate change. Though glacier-ice microbes are studied using culture or amplicon approaches, more challenging metagenomic approaches, which provide access to functional, genome-resolved information and viruses, are under-utilized, partly due to low biomass and potential contamination. Results We expand existing clean sampling procedures using controlled artificial ice-core experiments and adapted previously established low-biomass metagenomic approaches to study glacier-ice viruses. Controlled sampling experiments drastically reduced mock contaminants including bacteria, viruses, and free DNA to background levels. Amplicon sequencing from eight depths of two Tibetan Plateau ice cores revealed common glacier-ice lineages including Janthinobacterium, Polaromonas, Herminiimonas, Flavobacterium, Sphingomonas, and Methylobacterium as the dominant genera, while microbial communities were significantly different between two ice cores, associating with different climate conditions during deposition. Separately, ~355- and ~14,400-year-old ice were subject to viral enrichment and low-input quantitative sequencing, yielding genomic sequences for 33 vOTUs. These were virtually all unique to this study, representing 28 novel genera and not a single species shared with 225 environmentally diverse viromes. Further, 42.4% of the vOTUs were identifiable temperate, which is significantly higher than that in gut, soil, and marine viromes, and indicates that temperate phages are possibly favored in glacier-ice environments before being frozen. In silico host predictions linked 18 vOTUs to co-occurring abundant bacteria (Methylobacterium, Sphingomonas, and Janthinobacterium), indicating that these phages infected ice-abundant bacterial groups before being archived. Functional genome annotation revealed four virus-encoded auxiliary metabolic genes, particularly two motility genes suggest viruses potentially facilitate nutrient acquisition for their hosts. Finally, given their possible importance to methane cycling in ice, we focused on Methylobacterium viruses by contextualizing our ice-observed viruses against 123 viromes and prophages extracted from 131 Methylobacterium genomes, revealing that the archived viruses might originate from soil or plants. Conclusions Together, these efforts further microbial and viral sampling procedures for glacier ice and provide a first window into viral communities and functions in ancient glacier environments. Such methods and datasets can potentially enable researchers to contextualize new discoveries and begin to incorporate glacier-ice microbes and their viruses relative to past and present climate change in geographically diverse regions globally.

scholarly journals Glacier ice archives fifteen-thousand-year-old viruses

2020 ◽  
Author(s):  
Zhi-Ping Zhong ◽  
Natalie E. Solonenko ◽  
Yueh-Fen Li ◽  
Maria C. Gazitúa ◽  
Simon Roux ◽  
...  
Keyword(s):  
In Silico ◽  
Ice Core ◽  
Ice Cores ◽  
Metagenomic Sequencing ◽  
Climate Conditions ◽  
Ice Cap ◽  
Glacier Ice ◽  
Viral Communities ◽  
Microbial Groups ◽  
Sampling Procedures

AbstractWhile glacier ice cores provide climate information over tens to hundreds of thousands of years, study of microbes is challenged by ultra-low-biomass conditions, and virtually nothing is known about co-occurring viruses. Here we establish ultra-clean microbial and viral sampling procedures and apply them to two ice cores from the Guliya ice cap (northwestern Tibetan Plateau, China) to study these archived communities. This method reduced intentionally contaminating bacterial, viral, and free DNA to background levels in artificial-ice-core control experiments, and was then applied to two authentic ice cores to profile their microbes and viruses. The microbes differed significantly across the two ice cores, presumably representing the very different climate conditions at the time of deposition that is similar to findings in other cores. Separately, viral particle enrichment and ultra-low-input quantitative viral metagenomic sequencing from ∼520 and ∼15,000 years old ice revealed 33 viral populations (i.e., species-level designations) that represented four known genera and likely 28 novel viral genera (assessed by gene-sharing networks). In silico host predictions linked 18 of the 33 viral populations to co-occurring abundant bacteria, including Methylobacterium, Sphingomonas, and Janthinobacterium, indicating that viruses infected several abundant microbial groups. Depth-specific viral communities were observed, presumably reflecting differences in the environmental conditions among the ice samples at the time of deposition. Together, these experiments establish a clean procedure for studying microbial and viral communities in low-biomass glacier ice and provide baseline information for glacier viruses, some of which appear to be associated with the dominant microbes in these ecosystems.ImportanceThis study establishes ultra-clean microbial and viral sampling procedures for glacier ice, which complements prior in silico decontamination methods and expands, for the first time, the clean procedures to viruses. Application of these methods to glacier ice confirmed prior common microbiological findings for a new ice core climate record, and provides a first window into viral genomes and their ecology from glacier ice across two time horizons, and emphasizes their likely impact on abundant microbial groups. Together these efforts provide clean sampling approaches and foundational datasets that should enable simultaneous access to an archived virosphere in glacier ice.

scholarly journals Past temperature reconstructions from deep ice cores: relevance for future climate change

2006 ◽  
Vol 2 (2) ◽  
pp. 145-165 ◽  
Author(s):  
V. Masson-Delmotte ◽  
G. Dreyfus ◽  
P. Braconnot ◽  
S. Johnsen ◽  
J. Jouzel ◽  
...  
Keyword(s):  
Climate Change ◽  
Temperature Change ◽  
Climate Models ◽  
Ice Core ◽  
Ice Cores ◽  
Future Climate ◽  
Future Climate Change ◽  
Interglacial Period ◽  
Temperature Reconstructions

Abstract. Ice cores provide unique archives of past climate and environmental changes based only on physical processes. Quantitative temperature reconstructions are essential for the comparison between ice core records and climate models. We give an overview of the methods that have been developed to reconstruct past local temperatures from deep ice cores and highlight several points that are relevant for future climate change. We first analyse the long term fluctuations of temperature as depicted in the long Antarctic record from EPICA Dome C. The long term imprint of obliquity changes in the EPICA Dome C record is highlighted and compared to simulations conducted with the ECBILT-CLIO intermediate complexity climate model. We discuss the comparison between the current interglacial period and the long interglacial corresponding to marine isotopic stage 11, ~400 kyr BP. Previous studies had focused on the role of precession and the thresholds required to induce glacial inceptions. We suggest that, due to the low eccentricity configuration of MIS 11 and the Holocene, the effect of precession on the incoming solar radiation is damped and that changes in obliquity must be taken into account. The EPICA Dome C alignment of terminations I and VI published in 2004 corresponds to a phasing of the obliquity signals. A conjunction of low obliquity and minimum northern hemisphere summer insolation is not found in the next tens of thousand years, supporting the idea of an unusually long interglacial ahead. As a second point relevant for future climate change, we discuss the magnitude and rate of change of past temperatures reconstructed from Greenland (NorthGRIP) and Antarctic (Dome C) ice cores. Past episodes of temperatures above the present-day values by up to 5°C are recorded at both locations during the penultimate interglacial period. The rate of polar warming simulated by coupled climate models forced by a CO2 increase of 1% per year is compared to ice-core-based temperature reconstructions. In Antarctica, the CO2-induced warming lies clearly beyond the natural rhythm of temperature fluctuations. In Greenland, the CO2-induced warming is as fast or faster than the most rapid temperature shifts of the last ice age. The magnitude of polar temperature change in response to a quadrupling of atmospheric CO2 is comparable to the magnitude of the polar temperature change from the Last Glacial Maximum to present-day. When forced by prescribed changes in ice sheet reconstructions and CO2 changes, climate models systematically underestimate the glacial-interglacial polar temperature change.

scholarly journals Past temperature reconstructions from deep ice cores: relevance for future climate change

2006 ◽  
Vol 2 (4) ◽  
pp. 399-448 ◽  
Author(s):  
V. Masson-Delmotte ◽  
G. Dreyfus ◽  
P. Braconnot ◽  
S. Johnsen ◽  
J. Jouzel ◽  
...  
Keyword(s):  
Climate Change ◽  
Temperature Change ◽  
Climate Models ◽  
Ice Core ◽  
Ice Cores ◽  
Future Climate ◽  
Future Climate Change ◽  
Interglacial Period ◽  
Temperature Reconstructions

Abstract. Ice cores provide unique archives of past climate and environmental changes based only on physical processes. Quantitative temperature reconstructions are essential for the comparison between ice core records and climate models. Several methods have been developed to reconstruct past local temperatures from deep ice cores. Here we first analyse the long term fluctuations of temperature as depicted in the long Antarctic record from EPICA Dome C. The long term imprint of obliquity changes in the EPICA Dome C record is highlighted and compared to simulations conducted with the ECBILT-CLIO intermediate complexity climate model. We discuss the comparison between the current interglacial period and the long interglacial corresponding to marine isotopic stage 11, ~400 kyr BP. Previous studies had focused on the role of precession and the thresholds required to induce glacial inceptions. We suggest that, due to the low eccentricity configuration of MIS 11 and the Holocene, the effect of precession on the incoming solar radiation is damped and that changes in obliquity must be taken into account. The EPICA Dome C alignment of terminations I and VI published in 2004 corresponds to a phasing of the obliquity signals. A conjunction of low obliquity and minimum northern hemisphere summer insolation is not found in the next tens of thousand years, supporting the idea of an unusually long interglacial ahead. As a second point relevant for future climate change, we discuss the magnitude and rate of change of past temperatures reconstructed from Greenland (NorthGRIP) and Antarctic (Dome C) ice cores. Past episodes of temperatures above the present-day values by up to 5°C are recorded at both locations during the penultimate interglacial period. The polar warming simulated by coupled climate models forced by a CO2 increase of 1% per year is compared to ice-core-based temperature reconstructions. In Antarctica, the CO2-induced warming lies clearly beyond the natural rhythm of temperature fluctuations. In Greenland, the CO2-induced warming is as fast or faster than the most rapid temperature shifts of the last ice age. The magnitude of polar temperature change in response to a quadrupling of atmospheric CO2 is comparable to the magnitude of the polar temperature change from the Last Glacial Maximum to present-day. When forced by prescribed changes in ice sheet reconstructions and CO2 changes, climate models systematically underestimate the glacial-interglacial polar temperature change.

Inuit vulnerability and adaptive capacity to climate change in Ulukhaktok, Northwest Territories, Canada

Polar Record ◽  
2009 ◽  
Vol 46 (2) ◽  
pp. 157-177 ◽  
Author(s):  
Tristan Pearce ◽  
Barry Smit ◽  
Frank Duerden ◽  
James D. Ford ◽  
Annie Goose ◽  
...  
Keyword(s):  
Climate Change ◽  
Northwest Territories ◽  
Adaptive Capacity ◽  
Adaptive Strategies ◽  
The Arctic ◽  
Future Climate Change ◽  
Sources Of Information ◽  
Structured Interviews ◽  
Climate Change Research ◽  
Climate Conditions

ABSTRACTClimate change is already being experienced in the Arctic with implications for ecosystems and the communities that depend on them. This paper argues that an assessment of community vulnerability to climate change requires knowledge of past experience with climate conditions, responses to climatic variations, future climate change projections, and non-climate factors that influence people's susceptibility and adaptive capacity. The paper documents and describes exposure sensitivities to climate change experienced in the community of Ulukhaktok, Northwest Territories and the adaptive strategies employed. It is based on collaborative research involving semi-structured interviews, secondary sources of information, and participant observations. In the context of subsistence hunting, changes in temperature, seasonal patterns (for example timing and nature of the spring melt), sea ice and wind dynamics, and weather variability have affected the health and availability of some species of wildlife important for subsistence and have exacerbated risks associated with hunting and travel. Inuit in Ulukhaktok are coping with these changes by taking extra precautions when travelling, shifting modes of transportation, travel routes and hunting areas to deal with changing trail conditions, switching species harvested, and supplementing their diet with store bought foods. Limited access to capital resources, changing levels of traditional knowledge and land skills, and substance abuse were identified as key constraints to adaptation. The research demonstrates the need to consider the perspectives and experiences of local people for climate change research to have practical relevance to Arctic communities such as for the development and promotion of adaptive strategies.

scholarly journals Towards radiocarbon dating of ice cores

2009 ◽  
Vol 55 (194) ◽  
pp. 985-996 ◽  
Author(s):  
M. Sigl ◽  
T.M. Jenk ◽  
T. Kellerhals ◽  
S. Szidat ◽  
H.W. Gäggeler ◽  
...  
Keyword(s):  
Aerosol Particles ◽  
Ice Core ◽  
Ice Cores ◽  
Swiss Alps ◽  
Carbonaceous Aerosol ◽  
Polar Ice ◽  
Low Latitude ◽  
Bolivian Andes ◽  
Glacier Ice ◽  
Dating Method

AbstractA recently developed dating method for glacier ice, based on the analysis of radiocarbon in carbonaceous aerosol particles, is thoroughly investigated. We discuss the potential of this method to achieve a reliable dating using examples from a mid- and a low-latitude ice core. Two series of samples from Colle Gnifetti (4450 m a.s.l., Swiss Alps) and Nevado Illimani (6300 m a.s.l., Bolivian Andes) demonstrate that the 14C ages deduced from the water-insoluble organic carbon fraction represent the age of the ice. Sample sizes ranged between 7 and 100 μg carbon. For validation we compare our results with those from independent dating. This new method is thought to have major implications for dating non-polar ice cores in the future, as it provides complementary age information for time periods not accessible with common dating techniques.

Constraining future climate change using ice core data

2009 ◽  
Vol 6 (1) ◽  
pp. 012028
Author(s):  
Jean Jouzel ◽  
V Masson-Delmotte ◽  
D Raynaud
Keyword(s):  
Climate Change ◽  
Ice Core ◽  
Future Climate ◽  
Future Climate Change ◽  
Core Data

scholarly journals Imaging the impurity distribution in glacier ice cores with LA-ICP-MS

2020 ◽  
Vol 35 (10) ◽  
pp. 2204-2212
Author(s):  
Pascal Bohleber ◽  
Marco Roman ◽  
Martin Šala ◽  
Carlo Barbante
Keyword(s):  
Imaging Techniques ◽  
Ice Core ◽  
Ice Cores ◽  
Impurity Distribution ◽  
The Novel ◽  
Icp Ms ◽  
Glacier Ice

The novel combination of ice core LA-ICP-MS with improved imaging techniques reveals impurity localization without artifacts.

scholarly journals Ice Core Studies of Ward Hunt Ice Shelf, 1960

1964 ◽  
Vol 5 (37) ◽  
pp. 39-59 ◽  
Author(s):  
R. H. Ragle ◽  
R. G. Blair ◽  
L. E. Persson
Keyword(s):  
Ice Core ◽  
Polarized Light ◽  
Ice Cores ◽  
Laboratory Analysis ◽  
Dartmouth College ◽  
The Arctic ◽  
Ice Shelf ◽  
Glacier Ice ◽  
Initial Work ◽  
Physical And Chemical

AbstractA four-man party representing the Arctic Institute of North America and the Department of Geology, Dartmouth College, went to the Ward Hunt Ice Shelf in 1960 to obtain ice cores for subsequent laboratory analysis. The overall objective of the project was to study the structural and stratigraphic history of the shelf and its relationship to the environment through laboratory analysis of the cores, using stratigraphic. petrologic, chemical, and physical methods.The four cores obtained were logged, packed, and shipped to Dartmouth College for detailed study. The stratigraphy and structure of the ice were studied under natural and plane polarized light conditions. The results of this initial work showed that the cores were composed of four ice types: glacier ice, lake ice, sea ice, and transition ice. Chlorinity, sulfate, and density profiles complemented megascopic studies and were most useful criteria for plotting stratigraphie changes in ice type.Results of the investigations thus far have yielded new information about the gross structure and stratigraphy of the ice shelf and re-entrant. They have also shown that the physical and chemical techniques employed will be useful in future ice-core analysis.

scholarly journals Ice Core Studies of Ward Hunt Ice Shelf, 1960

1964 ◽  
Vol 5 (37) ◽  
pp. 39-59 ◽  
Author(s):  
R. H. Ragle ◽  
R. G. Blair ◽  
L. E. Persson
Keyword(s):  
Ice Core ◽  
Polarized Light ◽  
Ice Cores ◽  
Laboratory Analysis ◽  
Dartmouth College ◽  
The Arctic ◽  
Ice Shelf ◽  
Glacier Ice ◽  
Initial Work ◽  
Physical And Chemical

Abstract A four-man party representing the Arctic Institute of North America and the Department of Geology, Dartmouth College, went to the Ward Hunt Ice Shelf in 1960 to obtain ice cores for subsequent laboratory analysis. The overall objective of the project was to study the structural and stratigraphic history of the shelf and its relationship to the environment through laboratory analysis of the cores, using stratigraphic. petrologic, chemical, and physical methods. The four cores obtained were logged, packed, and shipped to Dartmouth College for detailed study. The stratigraphy and structure of the ice were studied under natural and plane polarized light conditions. The results of this initial work showed that the cores were composed of four ice types: glacier ice, lake ice, sea ice, and transition ice. Chlorinity, sulfate, and density profiles complemented megascopic studies and were most useful criteria for plotting stratigraphie changes in ice type. Results of the investigations thus far have yielded new information about the gross structure and stratigraphy of the ice shelf and re-entrant. They have also shown that the physical and chemical techniques employed will be useful in future ice-core analysis.

scholarly journals An emerging technique: multi-ice-core multi-parameter correlations with Antarctic sea-ice extent

2011 ◽  
Vol 52 (57) ◽  
pp. 347-354 ◽  
Author(s):  
Sharon B. Sneed ◽  
Paul A. Mayewski ◽  
Daniel A. Dixon
Keyword(s):  
Sea Ice ◽  
Ice Core ◽  
Chemical Species ◽  
Ice Cores ◽  
Initial Step ◽  
Single Species ◽  
Parameter Study ◽  
Sea Ice Extent ◽  
Antarctic Sea Ice ◽  
Siple Dome

AbstractUsing results stemming from the International Trans-Antarctic Scientific Expedition (ITASE) ice-core array plus data from ice cores from the South Pole and Siple Dome we investigate the use of sodium (Na+), non-sea-salt sulfate (nssSO42–) and methylsulfonate (MS–) as proxies for Antarctic sea-ice extent (SIE). Maximum and mean annual chemistry concentrations for these three species correlate significantly with maximum, mean and minimum annual SIE, offering more information and clarification than single ice-core and single species approaches. Significant correlations greater than 90% exist between Na+ and maximum SIE; nssSO42– with minimum and mean SIE; and MS– with mean SIE. Correlations with SIE within large geographic regions are in the same direction for all ice-core sites for Na+ and nssSO42– but not MS–. All ice cores display an SIE correlation with nssSO42– and MS–, but not all correlate with Na+. This multi-core multi-parameter study provides the initial step in determining which chemical species can be used reliably and in which regions as a building block for embedding other ice-core records. Once established, the resulting temporal and spatial matrix can be used to relate ice extents, atmospheric patterns, biological productivity and site conditions.

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