scholarly journals A highly efficient auxin-producing bacterial strain and its effect on plant growth

2021 ◽  
Vol 19 (1) ◽  
Author(s):  
Seunghye Park ◽  
A-Leum Kim ◽  
Yoon-Kyung Hong ◽  
Ji-Hwan Shin ◽  
Se-Hwan Joo
Keyword(s):  
Plant Growth ◽  
Root Growth ◽  
Bacterial Strain ◽  
High Efficiency ◽  
Early Stage ◽  
Plant Root ◽  
Luria Bertani ◽  
Process Waste ◽  
Luria Bertani Broth ◽  
Rdna Sequencing

Abstract Background Various bacteria promote plant root growth in the rhizosphere, as a measure of securing and enlarging their ecological niche. These interactions are mediated by plant growth regulators (PGRs) such as auxin, and indole-3-acetic acid (IAA) is one of the physiologically active auxin. In this study, we isolated an unusual bacterial strain from food process waste with high efficiency and demonstrated its effects on plant rooting and early-stage growth. Results The efficiency of this bacterial strain in producing IAA was 16.6 mg/L/h in Luria-Bertani broth containing 0.05% l-tryptophan (Trp) at room temperature (24 ± 2 °C). Its IAA production was highly dependent on the presence of precursor, Trp. This bacterium was identified as Ignatzschineria sp. by 16S rDNA sequencing. Its bacterial culture supernatant (BCS) enhanced plant root initiation, root growth, and plant growth in the early stages. The root mass formed BCS-treated in apple mint cuttings was twofold of that formed in the control. The root number and length were 46% and 18% higher, respectively, in BCS-treated chrysanthemum cuttings than in the control. Conclusions These results show that the BCS of Ignatzschineria sp. CG20001 isolate obtained in this study can be used for agricultural applications. In addition, the novelty of this strain makes it a valuable genetic resource for biotechnological applications.

Fish effluents promote root growth and suppress fungal diseases in tomato transplants

2015 ◽  
Vol 95 (2) ◽  
pp. 427-436 ◽  
Author(s):  
Valérie Gravel ◽  
Martine Dorais ◽  
Dipa Dey ◽  
Grant Vandenberg
Keyword(s):  
Plant Growth ◽  
Root Growth ◽  
Plant Root ◽  
Fish Farming ◽  
Pythium Ultimum ◽  
Fungal Diseases ◽  
Growth Promoter ◽  
Soil Suppressiveness ◽  
Nutrient Value

Gravel, V., Dorais, M., Dey, D. and Vandenberg, G. 2015. Fish effluents promote root growth and suppress fungal diseases in tomato transplants. Can. J. Plant Sci. 95: 427–436. Aquaculture systems generate large amounts of wastes which may constitute a beneficial amendment for horticultural crop in terms of nutrients, plant growth promoter and disease suppressiveness. This study aimed to determine (1) the nutrient value of rainbow trout farming effluents coming from two feed regimes and (2) the plant growth and disease suppressiveness effects of those fish farming effluents on tomato transplants. The effluent sludge from Skretting Orient™ (SO) had a higher content of P (38 vs. 32 mg L−1), K (23 vs. 11 mg L−1), N (19 vs. to 11 mg NO3 L−1; 186 vs. 123 mg NH4 L−1), and a higher NO3:NH4 ratio (1:9 vs. 1:13) compared with the Martin Classic (MC), while MC was richer in Mg (42 vs. 24 mg L−1) and Ca (217 vs. 169 mg L−1). For the first trial, a stimulating effect of the fish effluent was observed on plant height, leaf area and root dry biomass, while only the root biomass was increased during the second trial. Fish sludge was rich in microorganisms (97 and 142 µg fluorescein h−1 mL−1 for SO and MC, respectively) and their ability to suppress Pythium ultimum Trow and Fusarium oxysporum f.sp. lycopersici (Sacc.) Snyder & Hansen was observed. Both crude fish effluents reduced in vitro mycelial growth of P. ultimum and F. oxysporum, by 100 and 32%, respectively, while MC effluents showed a higher inhibition against F. oxysporum. When fish effluents were sterilized by filtration or autoclaving, lower in vitro inhibition of P. ultimum and F. oxysporum was observed. Mixed fish effluents reduced tomato plant root colonization by P. ultimum (by up to 5.7-fold) and F. oxysporum (by up to 2.1-fold). These results showed that fish effluent can be used as soil amendments to promote plant growth and increase soil suppressiveness, which in turn can prevent soil-borne diseases.

scholarly journals Bio-statistical evaluation of cultural conditions on industrial textile dye decolourisation using a native bacterium Micrococcus endophyticus (ES37)

2015 ◽  
Vol 5 (4) ◽  
pp. 557-568
Author(s):  
P. M. Ayyasamy ◽  
Suresh S. S. Raja ◽  
B. Subashni ◽  
R. Palanivelan
Keyword(s):  
Environmental Factors ◽  
Yeast Extract ◽  
Bacterial Strain ◽  
Dye Removal ◽  
Nitrogen Sources ◽  
Luria Bertani ◽  
Textile Dye ◽  
Rdna Sequencing ◽  
Golden Yellow ◽  
Dye Decolourisation

An indigenous dye-decolourising bacterium Micrococcus endophyticus (ES37) was isolated from dye contaminated soil and identified by 16S rDNA sequencing. The bacterial strain ES37 exhibited 97.19% of dye removal capacity in Luria-Bertani broth composition within 48 h, while the culture containing yeast extract showed 53.4% decolourisation in 72 h. In the absence of carbon and nitrogen sources, the bacterial strain failed to decolourise the dye, even on extended incubation. The effect of environmental factors on decolourisation was investigated by Plackett–Burman design and the significant parameters were lactose, yeast extract and pH. Optimisation of these factors was done by response surface methodology with central composite design; the decolourisation ranged from 0.43 to 77.49%. The optimised levels of lactose, yeast extract and pH were found to be 0.85% (w/v), 0.71% (w/v) and 7.5%, respectively. Under the optimal conditions, decolourisation of remazol golden yellow by ES37 strain was 81.61%, which was in agreement with the predicted value of 79.99%. These findings revealed the interactions and importance of environmental factors on dye decolourisation using native bacteria and also their standard point for an effective dye removal process.

scholarly journals AtSK11 and AtSK12 Mediate the Mild Osmotic Stress-Induced Root Growth Response in Arabidopsis

2020 ◽  
Vol 21 (11) ◽  
pp. 3991 ◽  
Author(s):  
Long Dong ◽  
Zhixin Wang ◽  
Jing Liu ◽  
Xuelu Wang
Keyword(s):  
Arabidopsis Thaliana ◽  
Transcription Factor ◽  
Plant Growth ◽  
Osmotic Stress ◽  
Root Growth ◽  
Growth Response ◽  
Glycogen Synthase ◽  
Plant Root ◽  
Bhlh Transcription Factor ◽  
Mild Stress

Although most osmotic stresses are harmful to plant growth and development, certain drought- or polyethylene glycol (PEG)-induced mild osmotic stresses promote plant root growth. The underlying regulatory mechanisms of this response remain elusive. Here, we report that the GLYCOGEN SYNTHASE KINASE 3 (GSK3) genes ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11 (AtSK11) (AT5G26751) and AtSK12 (AT3G05840) are involved in the mild osmotic stress (−0.4 MPa) response in Arabidopsis thaliana. When grown on plant medium infused with different concentrations of PEG to mimic osmotic stress, both wild-type (WT) and atsk11atsk12 plants showed stimulated root growth under mild osmotic stress (−0.4 MPa) but repressed root growth under relatively strong osmotic stress (−0.5, −0.6, −0.7 MPa) as compared to the mock condition (−0.25 MPa). The root growth stimulation of atsk11atsk12 was more sensitive to −0.4 MPa treatment than was that of WT, indicating that AtSK11 and AtSK12 inhibit the mild stress-induced root growth response. RNA-seq analysis of WT and atsk11atsk12 plants under three water potentials (−0.25 MPa, −0.4 MPa, −0.6 MPa) revealed 10 differentially expressed candidate genes mainly involved in cell wall homeostasis, which were regulated by AtSK11 and AtSK12 to regulate root growth in response to the mild stress condition (−0.4 MPa). Promoter motif and transcription factor binding analyses suggested that the basic helix-loop-helix (bHLH) transcription factor bHLH69/LJRHL1-LIKE 2 (LRL2) may directly regulate the expression of most −0.4 MPa-responsive genes. These findings indicate that mild osmotic stress (−0.4 MPa) promotes plant growth and that the GSK3 family kinase genes AtSK11 and AtSK12 play a negative role in the induction of root growth in response to mild osmotic stress.

scholarly journals Root-TRAPR: a modular plant growth device to visualize root development and monitor growth parameters, as applied to an elicitor response of Cannabis sativa

2021 ◽  
Author(s):  
Pipob Suwanchaikasem ◽  
Robert Walker ◽  
Alexander Idnurm ◽  
Jamie Selby-Pham ◽  
Berin A. Boughton
Keyword(s):  
Plant Growth ◽  
Root Growth ◽  
Root Morphology ◽  
Cannabis Sativa ◽  
Plant Root ◽  
Three Dimensional ◽  
Growth Chamber ◽  
Plant Responses ◽  
Elicitor Response ◽  
Root Tissues

Abstract Background Plant growth devices, for example rhizoponics, rhizoboxes, and ecosystem fabrication (EcoFAB) have been developed to facilitate studies of plant root morphology and plant-microbe interactions in controlled laboratory settings. However, several of these designs are suitable only for studying small model plants such as Arabidopsis thaliana and Brachypodium distachyon, and therefore require modification to be extended to larger plant species like crop plants. In addition, specific tools and technical skills required for fabricating these devices may not be available to researchers. Hence, this study aimed to establish an alternative protocol to generate a larger, modular and reusable plant growth device based on differently available resources. Results Root-TRAPR (Root-Transparent, Reusable, Affordable three-dimensional Printed Rhizo-hydroponic) system was successfully developed. It consists of two main parts, an internal root growth chamber and external structural frame. The internal root growth chamber is comprised of a polydimethylsiloxane (PDMS) gasket, microscope slide and acrylic sheet while the external frame is printed from a three-dimensional (3D) printer and secured with nylon screws. To test the efficiency and applicability of the system, industrial hemp (Cannabis sativa) was grown with or without exposure to chitosan, a well-known plant elicitor used for stimulating plant defense. Plant root morphology was clearly detected in the system and plant tissues were easily collected and processed to examine plant biological responses. Upon chitosan treatment, chitinase and peroxidase activities increased in root tissues (1.7- and 2.3-fold, respectively) and exudates (7.2- and 21.6-fold, respectively). Phytohormones related to plant growth and defense response were higher in root tissues as compared to the shoots. Additionally, within two weeks of observation, hemp plants exhibited dwarf growth in Root-TRAPR system, easing plant handling and allowing increased replication under limited growing space. Conclusion The Root-TRAPR system facilitates exploration of root morphology and root exudate of C. sativa under controlled conditions and at a smaller scale. The device is easy to fabricate and applicable for investigating plant responses toward elicitor challenge. This fabrication protocol is modifiable to suit other plants and can be adapted to study plant physiology in other biological contexts, such as plant responses against biotic and abiotic stresses.

scholarly journals High throughput phenotyping of root growth dynamics, lateral root formation, root architecture and root hair development enabled by PlaRoM

2009 ◽  
Vol 36 (11) ◽  
pp. 938 ◽  
Author(s):  
Nima Yazdanbakhsh ◽  
Joachim Fisahn
Keyword(s):  
Root Growth ◽  
Growth Kinetics ◽  
Lateral Root ◽  
Root Architecture ◽  
Imaging Techniques ◽  
Plant Root ◽  
Primary Root ◽  
Growth Media ◽  
Root Extension ◽  
Lateral Root Development

Plant organ phenotyping by non-invasive video imaging techniques provides a powerful tool to assess physiological traits and biomass production. We describe here a range of applications of a recently developed plant root monitoring platform (PlaRoM). PlaRoM consists of an imaging platform and a root extension profiling software application. This platform has been developed for multi parallel recordings of root growth phenotypes of up to 50 individual seedlings over several days, with high spatial and temporal resolution. PlaRoM can investigate root extension profiles of different genotypes in various growth conditions (e.g. light protocol, temperature, growth media). In particular, we present primary root growth kinetics that was collected over several days. Furthermore, addition of 0.01% sucrose to the growth medium provided sufficient carbohydrates to maintain reduced growth rates in extended nights. Further analysis of records obtained from the imaging platform revealed that lateral root development exhibits similar growth kinetics to the primary root, but that root hairs develop in a faster rate. The compatibility of PlaRoM with currently accessible software packages for studying root architecture will be discussed. We are aiming for a global application of our collected root images to analytical tools provided in remote locations.

Sink strength of citrus rootstocks under water deficit

2021 ◽  
Author(s):  
Simone F da Silva ◽  
Marcela T Miranda ◽  
Vladimir E Costa ◽  
Eduardo C Machado ◽  
Rafael V Ribeiro
Keyword(s):  
Plant Growth ◽  
Root Growth ◽  
Water Deficit ◽  
Carbon Allocation ◽  
Sink Strength ◽  
Rangpur Lime ◽  
Carbon Supply ◽  
Valencia Orange ◽  
Source Sink ◽  
Orange Trees

Abstract Carbon allocation between source and sink organs determines plant growth and is influenced by environmental conditions. Under water deficit, plant growth is inhibited before photosynthesis and shoot growth tends to be more sensitive than root growth. However, the modulation of source-sink relationship by rootstocks remain unsolved in citrus trees under water deficit. Citrus plants grafted on Rangpur lime are drought tolerant, which may be related to a fine coordination of the source-sink relationship for maintaining root growth. Here, we followed 13C allocation and evaluated physiological responses and growth of Valencia orange trees grafted on three citrus rootstocks (Rangpur lime, Swingle citrumelo and Sunki mandarin) under water deficit. As compared to plants on Swingle and Sunki rootstocks, ones grafted on Rangpur lime showed higher stomatal sensitivity to the initial variation of water availability and less accumulation of non-structural carbohydrates in roots under water deficit. High 13C allocation found in Rangpur lime roots indicates this rootstock has high sink demand associated with high root growth under water deficit. Our data suggest that Rangpur lime rootstock used photoassimilates as sources of energy and carbon skeletons for growing under drought, which is likely related to increases in root respiration. Taken together, our data revealed that carbon supply by leaves and delivery to roots are critical for maintaining root growth and improving drought tolerance, with citrus rootstocks showing differential sink strength under water deficit.

scholarly journals Neighborhood Energy Modeling and Monitoring: A Case Study

Energies ◽  
2021 ◽  
Vol 14 (12) ◽  
pp. 3716
Author(s):  
Francesco Causone ◽  
Rossano Scoccia ◽  
Martina Pelle ◽  
Paola Colombo ◽  
Mario Motta ◽  
...  
Keyword(s):  
High Performance ◽  
High Efficiency ◽  
Early Stage ◽  
Energy Performance ◽  
Monitoring Plan ◽  
Performance Targets ◽  
Carrier Energy ◽  
Zero Carbon ◽  
Energy Grid

Cities and nations worldwide are pledging to energy and carbon neutral objectives that imply a huge contribution from buildings. High-performance targets, either zero energy or zero carbon, are typically difficult to be reached by single buildings, but groups of properly-managed buildings might reach these ambitious goals. For this purpose we need tools and experiences to model, monitor, manage and optimize buildings and their neighborhood-level systems. The paper describes the activities pursued for the deployment of an advanced energy management system for a multi-carrier energy grid of an existing neighborhood in the area of Milan. The activities included: (i) development of a detailed monitoring plan, (ii) deployment of the monitoring plan, (iii) development of a virtual model of the neighborhood and simulation of the energy performance. Comparisons against early-stage energy monitoring data proved promising and the generation system showed high efficiency (EER equal to 5.84), to be further exploited.

scholarly journals The Growth of Leaf Lettuce and Bacterial Communities in a Closed Aquaponics System with Catfish

Horticulturae ◽  
2021 ◽  
Vol 7 (8) ◽  
pp. 222
Author(s):  
Kenji Yamane ◽  
Yuuki Kimura ◽  
Keita Takahashi ◽  
Isamu Maeda ◽  
Masayuki Iigo ◽  
...  
Keyword(s):  
Plant Growth ◽  
Early Stage ◽  
Amplicon Sequencing ◽  
Small Scale ◽  
Rrna Gene ◽  
Culture Solution ◽  
Beneficial Effects ◽  
Sustainable Cultivation ◽  
Microbial Groups ◽  
Production Period

Aquaponics is a circulating and sustainable system that combines aquaculture and hydroponics and forms a symbiotic relationship between fish, plants, and microorganisms. We hypothesized that feed alone could support plant growth, but the symbiosis with fish adds some beneficial effects on plant growth in aquaponics. In this study, we created three closed culture systems, namely, aquaponics, hydroponics without nitrogen (N) and phosphorus (P), and aquaculture, and added the same amount of feed containing N and P to all the treatments in order to test the hypothesis. Accumulation of NO3− and PO43− was alleviated in aquaponics and hydroponics as a result of plant uptake. Lettuce plants grown in aquaponics grew vigorously until 2 weeks and contained a constant level of N in plants throughout the production period, whereas those in hydroponics grew slowly in the early stage and then vigorously after 2 weeks with a late increment of N concentration. These results suggest that catfish help with the faster decomposition of the feed, but, in hydroponics, feed can be slowly dissolved and decomposed owing to the absence of the fish. The bacterial community structures of the culture solution were investigated using 16S rRNA gene amplicon sequencing. At the class level, Actinobacteria, Alphaproteobacteria, Betaproteobacteria, and Gammaproteobacteria were the major microbial groups in the solutions. Aquaponics prevented the pollution of tank solution and maintained a higher water quality compared with hydroponics and aquaculture, suggesting that aquaponics is a more sustainable cultivation system even in a small-scale system.

scholarly journals Alleviation of Salt Stress in Wheat Seedlings via Multifunctional Bacillus aryabhattai PM34: An In-Vitro Study

2021 ◽  
Vol 13 (14) ◽  
pp. 8030
Author(s):  
Shehzad Mehmood ◽  
Amir Abdullah Khan ◽  
Fuchen Shi ◽  
Muhammad Tahir ◽  
Tariq Sultan ◽  
...  
Keyword(s):  
Salt Stress ◽  
Plant Growth ◽  
Stress Tolerance ◽  
Bacterial Strain ◽  
Acc Deaminase ◽  
Wheat Growth ◽  
Wheat Seedlings ◽  
Pgp Traits ◽  
Bacillus Aryabhattai

Plant growth-promoting rhizobacteria play a substantial role in plant growth and development under biotic and abiotic stress conditions. However, understanding about the functional role of rhizobacterial strains for wheat growth under salt stress remains largely unknown. Here we investigated the antagonistic bacterial strain Bacillus aryabhattai PM34 inhabiting ACC deaminase and exopolysaccharide producing ability to ameliorate salinity stress in wheat seedlings under in vitro conditions. The strain PM34 was isolated from the potato rhizosphere and screened for different PGP traits comprising nitrogen fixation, potassium, zinc solubilization, indole acetic acid, siderophore, and ammonia production, along with various extracellular enzyme activities. The strain PM34 showed significant tolerance towards both abiotic stresses including salt stress (NaCl 2 M), heavy metal (nickel, 100 ppm, and cadmium, 300 ppm), heat stress (60 °C), and biotic stress through mycelial inhibition of Rhizoctonia solani (43%) and Fusarium solani (41%). The PCR detection of ituC, nifH, and acds genes coding for iturin, nitrogenase, and ACC deaminase enzyme indicated the potential of strain PM34 for plant growth promotion and stress tolerance. In the in vitro experiment, NaCl (2 M) decreased the wheat growth while the inoculation of strain PM34 enhanced the germination% (48%), root length (76%), shoot length (75%), fresh biomass (79%), and dry biomass (87%) over to un-inoculated control under 2M NaCl level. The results of experiments depicted the ability of antagonistic bacterial strain Bacillus aryabhattai PM34 to augment salt stress tolerance when inoculated to wheat plants under saline environment.

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