scholarly journals Avirulence gene based RFLP and rep-PCR distinguish the genetic variation of Xanthomonas oryzae pv. oryzae pathotypes in Bangladesh

2022 ◽  
Vol 9 (1) ◽  
pp. 29-40
Author(s):  
Mohammad Mahbubul Haque ◽  
Md. Mostafa Masud ◽  
Samrin Bashar ◽  
Mohammad Iqbal Hossain ◽  
Md. Zahangir Alam ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Bacterial Blight ◽  
Phylogenetic Analyses ◽  
Control Measures ◽  
Avirulence Gene ◽  
Effective Control ◽  
Repeat Domain ◽  
Relationship Of ◽  
The Relationship ◽  
Pcr Techniques

Bacterial blight (BB) caused by X. oryzae pv. oryzae is one of the devastating diseases of rice mostly in Asia. Genomes of X. oryzae pv. oryzae is highly variable due to rearrangement of the large contents of transposable elements and dynamic changes of X. oryzae pv. oryzae population regulated efficiency of the control measures used for BB management of rice worldwide. In this study, genetic variation of X. oryzae pv. oryzae pathotypes of Bangladesh was studied using aviruelnce gene based RFLP and rep-PCR techniques aimed to formulate pathogen targeted effective control measures against BB of rice. Eight pathotypes of X. oryzae pv. oryzae field isolates were identified based on their reactions against 10 Near Isogenic Lines (NILs). Among eight pathotypes, pathotypes IV and V contained higher number of isolates which were 30.13% and 23.01% respectively while pathotype VIII revealed as minimum containing only 2.51% of total isolates. These eight pathotypes were studied for their genetic variation by RFLP using avrBs3 repeat domain as probe. The results conceded that Bangladeshi X. oryzae pv. oryzae strains seem carrying a minimum of two and maximum of nine avrBs3 family genes homologs. The resistance phenotype on IRBB7 and IRBB10 NILs also indicated presence of two major avrBs3 family genes viz. avrxa7 and avrXa10 in some pathotypes. Relationship of phylogenicity exhibited that X. oryzae pv. oryzae pathotypes assorted into two RFLP haplotypes as well as these haplotypes are largely distributed in Bangladesh. Phylogenetic analyses carried out by (REP, ERIC), rep-PCR and BOX depicted the presence of two main molecular haplotypes of X. oryzae pv. oryzae pathotypes. The relationship between pathotypes and molecular haplotypes of X. oryzae pv. oryzae in Bangladesh indicated that the same lineage possesses different pathotypes and different lineage possesses different pathotypes. The results indicated that eight different pathotypes might have originated from common inherited haplotypes with a wide genetic variation.

Genetic variation and relationship of ultrasonic measures and carcass composition in Suffolk cross lambs

1996 ◽  
Vol 1996 ◽  
pp. 111-111
Author(s):  
V.C. Flamarique ◽  
R.M. Lewis ◽  
G. Simm
Keyword(s):  
Genetic Variation ◽  
Selection Criteria ◽  
Live Weight ◽  
Ultrasonic Measurement ◽  
Carcass Composition ◽  
Selection Indices ◽  
Terminal Sire ◽  
Relationship Of ◽  
The Relationship

Excess fat in lamb is regarded as an important reason for less lamb meat being purchased by consumers. This has encouraged the development and use (particularly in Terminal Sire breeds) of selection indices that can identify animals that will sire leaner progeny. These indices usually include live weight and in vivo predictors of body composition, such as an ultrasonic measurement of muscle and fat depth, as selection criteria (Simm and Dingwall, 1989). But the usefulness of such in vivo measurements as predictors of carcass composition depends on the correlation between, and the variation in, live and carcass measures. The objectives of this study were to determine the strength of the relationship between ultrasound and dissection measures of carcass composition, and the degree of genetic variation in these measures, in crossbred progeny of Suffolk rams.

Anterastes davrazensis sp. n. (Orthoptera, Tettigoniidae): morphology, song and 16S rDNA phylogeny

Zootaxa ◽  
2012 ◽  
Vol 3401 (1) ◽  
pp. 49 ◽  
Author(s):  
SARP KAYA ◽  
DRAGAN CHOBANOV ◽  
BATTAL ÇIPLAK
Keyword(s):  
New Species ◽  
16S Rdna ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Strong Support ◽  
16S Rdna Sequence ◽  
Rdna Sequence Data ◽  
Male Calling ◽  
Relationship Of ◽  
The Relationship

The new species Anterastes davrazensis sp. n. (Orthoptera, Tettigoniidae) is described from south-eastern Turkey. Description, diagnosis and relationships of the new species were studied utilizing morphology, male calling songs and 16S rDNA sequence data from all species in the genus. Morphology and song syllable structure indicate A. davrazensis sp. n. is related to A. uludaghensis. Phylogenetic analyses based on representative haplotypes of 16S rDNA, using Sureyaella bella, Parapholidoptera distincta and Bolua turkiyae as outgroups, also suggested strong support to the relationship of these two species. A. davrazensis sp. n. differs from its closest relative A. uludaghensis by the higher number of stridulatory pegs and the song, consisting of irregular syllable groups.

Application of Catastrophe Theory in Traffic Flow of Highway Tunnel Group

2013 ◽  
Vol 734-737 ◽  
pp. 1609-1612
Author(s):  
Wei Zhan ◽  
Yue Quan Shang ◽  
Feng Xia Chi
Keyword(s):  
Traffic Flow ◽  
Traffic Control ◽  
Catastrophe Theory ◽  
Critical Density ◽  
Flow Characteristics ◽  
Control Measures ◽  
Highway Tunnel ◽  
Relationship Of ◽  
The Relationship ◽  
Highway Management

Based on the investigation of traffic flow in a typical highway tunnel group, the traffic flow characteristics were analyzed by catastrophe theory with the relationship of the speed, volume and density. The discontinuous leaping change phenomenon of the traffic data under large traffic volume is better explained by the catastrophe model than the traditional ways. The value of critical density can be obtained by analyzing the critical state of traffic flow. Then the traffic flow warning can be realized in highway tunnel group region. The data and results can be used for the reference of taking traffic control measures by highway management.

scholarly journals Phylogenetic Analysis of Mitogenomic Data Sets Resolves the Relationship of Seven Macropostrongyloides Species from Australian Macropodid and Vombatid Marsupials

Pathogens ◽  
2020 ◽  
Vol 9 (12) ◽  
pp. 1042 ◽  
Author(s):  
Tanapan Sukee ◽  
Anson V. Koehler ◽  
Ross Hall ◽  
Ian Beveridge ◽  
Robin B. Gasser ◽  
...  
Keyword(s):  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Mitochondrial Protein ◽  
Parasitic Nematodes ◽  
Data Sets ◽  
Protein Amino Acid ◽  
Protein Coding ◽  
Relationship Of ◽  
The Relationship ◽  
Swamp Wallaby

Nematodes of the genus Macropostrongyloides inhabit the large intestines or stomachs of macropodid (kangaroos and wallabies) and vombatid (wombats) marsupials. This study established the relationships of seven species of Macropostrongyloides using mitochondrial (mt) protein amino acid sequence data sets. Phylogenetic analyses revealed that species of Macropostrongyloides (M. lasiorhini, M. baylisi, M. yamagutii, M. spearei, M. mawsonae and M. woodi) from the large intestines of their hosts formed a monophyletic assemblage with strong nodal support to the exclusion of M. dissimilis from the stomach of the swamp wallaby. Furthermore, the mitochondrial protein-coding genes provided greater insights into the diversity and phylogeny of the genus Macropostrongyloides; such data sets could potentially be used to elucidate the relationships among other parasitic nematodes of Australian marsupials.

scholarly journals Unraveling the relationship of loneliness and isolation in schizophrenia: Polygenic dissection and causal inference

2020 ◽  
Author(s):  
A. Andreu-Bernabeu ◽  
C.M. Díaz-Caneja ◽  
J. Costas ◽  
L. de Hoyos ◽  
C. Stella ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Control Sample ◽  
Predictive Ability ◽  
Obsessive Compulsive ◽  
Correlation Pattern ◽  
Independent Case ◽  
Obsessive Compulsive Disorders ◽  
Relationship Of ◽  
The Relationship ◽  
Compulsive Disorders

ABSTRACTThere is increasing recognition of the association between loneliness and social isolation (LNL-ISO) with schizophrenia. Here, we demonstrate significant LNL-ISO polygenic score prediction on schizophrenia in an independent case-control sample (N=3,488). We then dissect schizophrenia predisposing variation into subsets of variants based on their effect on LNL-ISO. Genetic variation with concordant effects in both phenotypes show significant SNP-based heritability enrichment, higher polygenic predictive ability in females and positive covariance with other mental disorders such as depression, anxiety, attention-deficit hyperactivity, alcohol use disorder, and autism. Conversely, genetic variation with discordant effects is only predictive in males and negatively correlated with those disorders. This correlation pattern is not observed for bipolar and obsessive-compulsive disorders. Mendelian randomization analyses demonstrate a plausible bi-directional causal relationship between LNL-ISO and schizophrenia, with a greater effect of LNL-ISO liability on schizophrenia. These results illustrate the genetic footprint of LNL-ISO on schizophrenia and suggest its role as a potential target for early intervention.

scholarly journals Whole genome genetic variation and linkage disequilibrium in a diverse collection of Listeria monocytogenes isolates

2020 ◽  
Author(s):  
Swarnali Louha ◽  
Richard J. Meinersmann ◽  
Travis C. Glenn
Keyword(s):  
Genetic Variation ◽  
Linkage Disequilibrium ◽  
Listeria Monocytogenes ◽  
Pathogenic Bacteria ◽  
Genetic Material ◽  
Control Measures ◽  
Effective Control ◽  
Strong Linkage Disequilibrium ◽  
Whole Genome ◽  
Limited Exchange

AbstractWe performed whole-genome multi-locus sequence typing for 2554 genes in a large and heterogenous panel of 180 Listeria monocytogenes strains having diverse geographical and temporal origins. The subtyping data was used for characterizing genetic variation and evaluating patterns of linkage disequilibrium in the pan-genome of L. monocytogenes. Our analysis revealed the presence of strong linkage disequilibrium in L. monocytogenes, with ∼99% of genes showing significant non-random associations with a large majority of other genes in the genome. Twenty-seven loci having lower levels of association with other genes were considered to be potential “hot spots” for horizontal gene transfer (i.e., recombination via conjugation, transduction, and/or transformation). The patterns of linkage disequilibrium in L. monocytogenes suggest limited exchange of foreign genetic material in the genome and can be used as a tool for identifying new recombinant strains. This can help understand processes contributing to the diversification and evolution of this pathogenic bacteria, thereby facilitating development of effective control measures.

scholarly journals microRNA-155-3p delivered by M2 macrophages-derived exosomes enhances the progression of medulloblastoma through regulation of WDR82

2022 ◽  
Vol 20 (1) ◽  
Author(s):  
Li Song ◽  
Bin Luan ◽  
Qingrong Xu ◽  
Ruihe Shi ◽  
Xiufang Wang
Keyword(s):  
Molecular Subtype ◽  
Luciferase Assay ◽  
M2 Macrophages ◽  
Mice Model ◽  
Repeat Domain ◽  
Relationship Of ◽  
Tumor Pathogenesis ◽  
The Relationship

Abstract Objective Exosomes, membranous nanovesicles, naturally bringing proteins, mRNAs, and microRNAs (miRNAs), play crucial roles in tumor pathogenesis. This study was to investigate the role of miR-155-3p from M2 macrophages-derived exosomes (M2-Exo) in promoting medulloblastoma (MB) progression by mediating WD repeat domain 82 (WDR82). Methods miR-155-3p expression was detected by RT-qPCR. The relationship of miR-155-3p with clinicopathological features of MB patients was analyzed. M2-Exo were isolated and identified by TEM, NTA and Western blot. CCK-8 assay, colony formation assay, flow cytometry, wound healing assay, and Transwell assay were performed to explore the role of miR-155-3p-enriched M2-Exo on the progression of MB cells. Luciferase assay were used to identify the relationship between miR-155-3p and WDR82. The effect of miR-155-3p-enriched M2-Exo on tumorigenesis of MB was confirmed by the xenograft nude mice model. Results miR-155-3p was up-regulated in MB tissues of patients and MB cell lines. High miR-155-3p expression was correlated with the pathological type and molecular subtype classification of MB patients. WDR82 was a direct target of miR-155-3p. miR-155-3p was packaged into M2-Exo. miR-155-3p-enriched M2-Exo promoted the progression of Daoy cells. miR-155-3p-enriched M2-Exo promoted in vivo tumorigenesis. Conclusion The study highlights that miR-155-3p-loaded M2-Exo enhances the growth of MB cells via down-regulating WDR82, which might provide a deep insight into MB mechanism.

scholarly journals Polygenic contribution to the relationship of loneliness and social isolation with schizophrenia

2022 ◽  
Vol 13 (1) ◽  
Author(s):  
Álvaro Andreu-Bernabeu ◽  
Covadonga M. Díaz-Caneja ◽  
Javier Costas ◽  
Lucía De Hoyos ◽  
Carol Stella ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Social Isolation ◽  
Mendelian Randomization ◽  
Control Sample ◽  
Case Control ◽  
Hyperactivity Disorder ◽  
Independent Case ◽  
Relationship Of ◽  
The Relationship ◽  
Positive Covariance

AbstractPrevious research suggests an association of loneliness and social isolation (LNL-ISO) with schizophrenia. Here, we demonstrate a LNL-ISO polygenic score contribution to schizophrenia risk in an independent case-control sample (N = 3,488). We then subset schizophrenia predisposing variation based on its effect on LNL-ISO. We find that genetic variation with concordant effects in both phenotypes shows significant SNP-based heritability enrichment, higher polygenic contribution in females, and positive covariance with mental disorders such as depression, anxiety, attention-deficit hyperactivity disorder, alcohol dependence, and autism. Conversely, genetic variation with discordant effects only contributes to schizophrenia risk in males and is negatively correlated with those disorders. Mendelian randomization analyses demonstrate a plausible bi-directional causal relationship between LNL-ISO and schizophrenia, with a greater effect of LNL-ISO liability on schizophrenia than vice versa. These results illustrate the genetic footprint of LNL-ISO on schizophrenia.

scholarly journals Positive association of SCD1 genetic variation and metabolic syndrome in dialysis patients in China

2020 ◽  
Vol 17 (2) ◽  
pp. 111-119
Author(s):  
Yanyan Guo ◽  
Zibo Xiong ◽  
Meiling Su ◽  
Limin Huang ◽  
Jinlan Liao ◽  
...  
Keyword(s):  
Metabolic Syndrome ◽  
Genetic Variation ◽  
Positive Association ◽  
Cross Sectional Study ◽  
Renal Diseases ◽  
Sectional Study ◽  
Dialysis Patients ◽  
Cross Sectional ◽  
Relationship Of ◽  
The Relationship

Aim: Metabolic syndrome (MetS) diagnosed in the dialysis patients is increasingly reported which worsens the prognosis of the renal diseases. The relationship of SCD1 with MetS is largely unknown. The purpose of this study was to investigate the relationship between SCD1 polymorphism and MetS in dialysis patients. Methods: A cross-sectional study was conducted on 323 Chinese dialysis patients, and the correlation between the seven SNPs of SCD1 gene (rs10883465, rs2060792, rs1502593, rs522951, rs3071, rs3978768 and rs1393492) and MetS was analyzed. Results: One tag-SNP (rs1393492) has significantly associated with the prevalence of MetS. Dialysis patients with rs1393492 AA genotype of SCD1 are more prone to MetS (p = 0.021). Conclusion: This study shows that the rs1393492 variations of SCD1 gene are related with the development of MetS in Chinese dialysis patients.

Generalized Locus of Control and Health Locus of Control of Surgical Patients

1983 ◽  
Vol 52 (2) ◽  
pp. 599-602 ◽  
Author(s):  
Judy Larde ◽  
James R. Clopton
Keyword(s):  
Locus Of Control ◽  
Health Locus Of Control ◽  
Control Measures ◽  
Control Beliefs ◽  
Alternate Forms ◽  
Multidimensional Health ◽  
Relationship Of ◽  
The Relationship ◽  
Larger Sample ◽  
Specific Health

The relationship of generalized locus of control expectancies and specific health locus of control beliefs was explored in a sample of 24 cholecystectomy patients prior to surgery. The Internality, Powerful Others, and Chance scales were used to assess generalized locus of control expectancies, and specific health locus of control beliefs were assessed by the Multidimensional Health Locus of Control scales. The results question the theoretical commonality between the two locus of control measures and suggest that the alternate forms of the health locus of control scales are not equivalent. Cross-validation on a larger sample is required.

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