scholarly journals Changes in Elastic Fibres in Yak Lungs at Different Developmental Stages

Author(s):  
Jingyi Li ◽  
Xiangqiong Meng ◽  
Lihan Wang ◽  
Yang Yu ◽  
Hongxian Yu ◽  
...  

Abstract BackgroundYaks have a strong adaptability to the plateau environment, which is closely associated with the effective oxygen utilization rate of their lung tissue. The elastic fibre is an important adaptive structure of alveolar tissue. However, there are few studies on the development of the structure of lung tissue and the changes in elastic fibres of yak after birth. The purpose of this study was to investigate the changes of elastic fibers in the lungs of yaks after birth and the relationship between these changes and adaptation to hypoxic environment.ResultsIn this experiment, a histological method was employed to observe the changes in the lung tissue structure of yaks at four ages: 1 day old, 30 days old, 180 days old and adult. There was no significant difference in the area of a single alveolus between the 1-day-old and 30-day-old groups (P > 0.05). In yaks aged over 30 days, the single alveolar area gradually increased with age (P < 0.05). The observation of elastic fibres showed that elastic fibres in alveolar tissue increased significantly from the ages of 30 days to 180 days (P < 0.05) and stabilized after 180 days of age. Transcriptome analysis determined the highest levels of differentially expressed genes between 30 days of age and 180 days of age. KEGG analysis showed that the PI3K-Akt signalling pathway and MAPK pathway, which are involved in fibre formation, accounted for the largest proportion of differentially expressed genes between 30 days of age and 180 days of age. The expression levels of 36 genes related to fibre formation were analysed, and several genes related to elastic fibre formation and collagen fibre formation were determined to be highly expressed at the age of 30 days.ConclusionsThe content of elastic fibres in the alveolar tissue of yaks increases significantly after birth, but this change occurs only from 30 days of age to 180 days of age to make better use of oxygen in the environment.

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Jingyi Li ◽  
Xiangqiong Meng ◽  
Lihan Wang ◽  
Yang Yu ◽  
Hongxian Yu ◽  
...  

Abstract Background Yaks have a strong adaptability to the plateau environment, which can be attributed to the effective oxygen utilization rate of their lung tissue. Elastic fibre confers an important adaptive structure to the alveolar tissues in yaks. However, little research has been focused on the structural development of lung tissues and the expression levels of elastic fibres in yaks after birth. Therefore, this study aimed to investigate the morphological changes of elastic fibers and expression profiles of fibre-formation genes in yak lungs at different growth stages and the relationship between these changes and plateau adaptation. Results Histological staining was employed to observe the morphological changes in the lung tissue structure of yaks at four different ages: 1 day old, 30 days old, 180 days old and adult. There was no significant difference in the area of a single alveolus between the 1-day-old and 30-day-old groups (P-value > 0.05). However, the single alveolar area was gradually increased with an increase in age (P-value < 0.05). Elastic fibre staining revealed that the amount of elastic fibres in alveolar tissue was increased significantly from the ages of 30 days to 180 days (P-value < 0.05) and stabilized during the adult stage. Transcriptome analysis indicated that the highest levels of differentially expressed genes were found between 30 days of age and 180 days of age. KEGG analysis showed that PI3K-Akt signalling pathway and MAPK pathway, which are involved in fibre formation, accounted for the largest proportion of differentially expressed genes between 30 days of age and 180 days of age. The expression levels of 36 genes related to elastic fibre formation and collagen fibre formation were also analysed, and most of these genes were highly expressed in 30-day-old and 180-day-old yaks. Conclusions The content of elastic fibres in the alveolar tissue of yaks increases significantly after birth, but this change occurs only from 30 days of age to 180 days of age. Our study indicates that elastic fibres can improve the efficiency of oxygen utilization in yaks under harsh environmental conditions.


2021 ◽  
Vol 9 ◽  
Author(s):  
Ying Qiao ◽  
Bo Zhang ◽  
Ying Liu

Purpose: To develop a comprehensive differential expression gene profile as well as a prediction model based on the expression analysis of pediatric sepsis specimens.Methods: In this study, compared with control specimens, a total of 708 differentially expressed genes in pediatric sepsis (case–control at a ratio of 1:3) were identified, including 507 up-regulated and 201 down-regulated ones. The Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis of differentially expressed genes indicated the close interaction between neutrophil activation, neutrophil degranulation, hematopoietic cell lineage, Staphylococcus aureus infection, and periodontitis. Meanwhile, the results also suggested a significant difference for 16 kinds of immune cell compositions between two sample sets. The two potential selected biomarkers (MMP and MPO) had been validated in septic children patients by the ELISA method.Conclusion: This study identified two potential hub gene biomarkers and established a differentially expressed genes-based prediction model for pediatric sepsis, which provided a valuable reference for future clinical research.


2021 ◽  
Vol 19 (1) ◽  
Author(s):  
Caixia Han ◽  
Shujiao He ◽  
Ruiqi Wang ◽  
Xuefeng Gao ◽  
Hong Wang ◽  
...  

Abstract Background Rho GTPase activating protein 9 (ARHGAP9) is expressed in various types of cancers and can inactivate Rho GTPases that mainly regulate cytoskeletal dynamics. However, the exact role of ARHGAP9 in acute myeloid leukemia (AML) has yet to be clarified. Methods We compared the transcriptional expression, prognosis, differentially expressed genes, functional enrichment, and hub genes in AML patients on the basis of the data published in the following databases: UALCAN, GEPIA, Gene Expression Omnibus, the Human Protein Atlas, Cancer Cell Line Encyclopedia, LinkedOmics, Metascape, and String. Data from the Cancer Genome Atlas database was used to evaluate the correlations between ARHGAP9 expression and various clinicopathological parameters, as well as the significantly different genes associated with ARHGAP9 expression. Results We found that ARHGAP9 expression was higher in the tissues and cell lines extracted from patients with AML than corresponding control tissues and other cancer types. ARHGAP9 overexpression was associated with decreased overall survival (OS) in AML. Compared with the ARHGAP9low group, the ARHGAP9high group, which received only chemotherapy, showed significantly worse OS and event-free survival (EFS); however, no significant difference was observed after treatment with autologous or allogeneic hematopoietic stem cell transplantation (auto/allo-HSCT). The ARHGAP9high patients undergoing auto/allo-HSCT also had a significantly better prognosis with respect to OS and EFS than those receiving only chemotherapy. Most overlapping genes of the significantly different genes and co-expression genes exhibited enriched immune functions, suggesting the immune regulation potential of ARHGAP9 in AML. A total of 32 hub genes were identified from the differentially expressed genes, within which the KIF20A had a significant prognostic value for AML. Conclusions ARHGAP9 overexpression was associated with poor OS in AML patients and can be used as a prognostic biomarker. AML patients with ARHGAP9 overexpression can benefit from auto/allo-HSCT rather than chemotherapy.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Qianyun Ge ◽  
Yongbo Guo ◽  
Wangshan Zheng ◽  
Shengguo Zhao ◽  
Yuan Cai ◽  
...  

AbstractDue to their long-term colonization of and widespread distribution in plateau environments, yaks can serve as an ideal natural animal model for the adaptive evolution of other plateau species, including humans. Some studies reported that the lung and heart are two key organs that show adaptive transcriptional changes in response to high altitudes, and most of the genes that show differential expression in lung tissue across different altitudes display nonlinear regulation. To explore the molecular mechanisms that are activated in yak lung tissue in response to hypoxia, the mRNAs, lncRNAs and miRNAs of lung tissue from 9 yaks living at three different altitudes (3400 m, 4200 m and 5000 m), with three repetitions per altitude, were sequenced. Two Zaosheng cattle from 1500 m were selected as low-altitude control. A total of 21,764 mRNAs, 14,168 lncRNAs and 1209 miRNAs (305 known and 904 novel miRNAs) were identified. In a comparison of yaks and cattle, 4975 mRNAs, 3326 lncRNAs and 75 miRNAs were differentially expressed. A total of 756 mRNAs, 346 lncRNAs and 83 miRNAs were found to be differentially expressed among yaks living at three different altitudes (fold change ≥ 2 and P-value < 0.05). The differentially expressed genes between yaks and cattle were functionally enriched in long-chain fatty acid metabolic process and protein processing, while the differentially expressed genes among yaks living at three different altitudes were enriched in immune response and the cell cycle. Furthermore, competing endogenous RNA (ceRNA) networks were investigated to illustrate the roles of ceRNAs in this process, the result was also support the GO and KEGG analysis. The present research provides important genomic insights for discovering the mechanisms that are activated in response to hypoxia in yak lung tissue.


BMC Cancer ◽  
2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Jing Liu ◽  
Ying Zuo ◽  
Gui-Mei Qu ◽  
Xiao Song ◽  
Zhong-Hui Liu ◽  
...  

Abstract Background The molecular pathogenesis of endometrial cancer is not completely understood. CypB upregulated in many cancers, however, its role in endometrial carcinoma has not been studied. Here, we determine the effect of CypB on the growth of endometrial cancer. Methods In this study, we examined the expression of CypB in endometrial cancer tissues using immunohistochemistry. CypB silenced in HEC-1-B cell line by shRNA. CCK-8, colony formation assays, wound healing assays, and transwell analysis were performed to assess its effect on tumor cell proliferation and metastasis. Furthermore, microarray analysis was carried out to compare the global mRNA expression profile between the HEC-1-B and CypB-silenced HEC-1-B cells. Gene ontology and KEGG pathway enrichment analysis were performed to determine the potential function of differentially expressed genes related to CypB. Results We found that CypB was upregulated in endometrial cancer, inhibit CypB expression could significantly suppress cell proliferation, metastasis, and migration. We identified 1536 differentially expressed genes related to CypB (onefold change, p < 0.05), among which 652 genes were upregulated and 884 genes were downregulated. The genes with significant difference in top were mainly enriched in the cell cycle, glycosphingolipid biosynthesis, adherens junctions, and metabolism pathways. Conclusion The results of our study suggest that CypB may serve as a novel regulator of endometrial cell proliferation and metastasis, thus representing a novel target for gene-targeted endometrial therapy. Trial registration YLYLLS [2018] 008. Registered 27 November 2017.


2020 ◽  
Author(s):  
Yanzhi Ge ◽  
Li Zhou ◽  
Zuxiang Chen ◽  
Yingying Mao ◽  
Ting Li ◽  
...  

Abstract Background: The disability rate associated with rheumatoid arthritis (RA) ranks high among inflammatory joint diseases. However, the cause and potential molecular events are as yet not clear. Here, we aimed to identify differentially expressed genes (DEGs), pathways and immune infiltration involved in RA utilizing integrated bioinformatics analysis and investigating potential molecular mechanisms. Materials and methods: The expression profiles of GSE55235, GSE55457, GSE55584 and GSE77298 were downloaded from the Gene Expression Omnibus database, which contained 76 synovial membrane samples, including 49 RA samples and 27 normal controls. The microarray datasets were consolidated and DEGs were acquired and further analyzed by bioinformatics techniques. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses of DEGs were performed using R (version 3.6.1) software, respectively. The protein-protein interaction (PPI) network of DEGs were developed utilizing the STRING database. Finally, the CIBERSORT was used to evaluate the infiltration of immune cells in RA. Results: A total of 828 DEGs were recognized, with 758 up-regulated and 70 down-regulated. GO and KEGG pathway analyses demonstrated that these DEGs focused primarily on cytokine receptor activity and relevant signaling pathways. The 30 most firmly related genes among DEGs were identified from the PPI network. The principal component analysis showed that there was a significant difference between the two tissues in infiltration immune. Conclusion: This study shows that screening for DEGs, pathways and immune infiltration utilizing integrated bioinformatics analyses could aid in the comprehension of the molecular mechanisms involved in RA development. Besides, our study provides valuable data related to DEGs, pathways and immune infiltration of RA and may provide new insight into the understanding of molecular mechanisms.


Blood ◽  
2009 ◽  
Vol 114 (22) ◽  
pp. 1816-1816
Author(s):  
Nicola Giuliani ◽  
Francesca Novara ◽  
Katia Todoerti ◽  
Nadia Zaffaroni ◽  
Raffaella Villa ◽  
...  

Abstract Abstract 1816 Poster Board I-842 Multiple myeloma (MM) is characterized by a tight relationship between tumor and bone microenvironment cells that supports the survival of MM cells and determines a severe impairment of bone homeostasis. Mesenchymal/osteoblastic cells have a critical pathophysiological role in this process either through the overproduction of growth factors and osteoclastogenic molecules or undergoing them same to alterations responsible of bone formation suppression that rarely repairs even after disease remission. These evidences suggest that bone microenvironments cells could be directly involved in myelomagenesis although it is still unclear whether bone microenvironment cells are primary tumoral in MM patients. To clarify this issue, we analyzed immunophenotypic, functional, transcriptional and genomic profiles of bone-derived mesenchymal (MSC) and osteoblastic (OB) cells obtained from a cohort of 24 MM patients at the diagnosis, 7 MGUS patients and 8 healthy donors (N) underwent to orthopedic surgery. MSC cells were isolated from bone biopsies collected in V-glass tube and minced extensively with surgical scissors. OB cells were directly isolated from the minced bone chips collected at the bottom of V-glass tube. The presence of potential haemopoietic and MM contaminating cells was excluded by FACS analysis in both MCSs and OBs, testing CD3, CD14, CD20 and CD138 antigens as well as the expression of CD105, CD146 and the osteoblast markers osteocalcin, alkaline phosphatase, collagen I and Runx2 evaluated in OBs as compared to MSCs Any significant difference in the immunophenotype of MSCs and OBs was not found between MM, MGUS and N with the exception of Runx2 expression that was found to be lower in MM vs. N-MSCs. Cell proliferation and cell doubling/day were found to be higher in MSCs as compared to OBs even if any significant difference was not found across the three groups analyzed. The transcriptional analysis of isolated MSCs and OBs was performed using high-density GeneChip® oligonucleotide microarrays. A multiclass analysis identified 43 differentially expressed genes, which characterized N-MSCs versus MM-MSCs cases but did not distinguish MGUS and MM samples. The molecular signature showed a modulation of genes involved in cell adhesion, cell cycle, transcriptional regulation (MAF and HOX genes) and cell proliferation. A similar transcriptional pattern (78 differentially expressed genes) was observed in N-OBs versus MM-OBs samples. Interestingly, HOXB genes (HOXB2, HOXB6 and HOXB7) were found to be up-regulated in MM as compared to N OBs. Gene expression profiling data were then confirmed by real time PCR. The genomic profiles of MSCs and OBs, obtained from 10 MM patients, were generated by whole-genome array-comparative genomic hybridization (array-CGH) using the 105K platform with a resolution of about 60 kb. Experiments were performed according to the Agilent's protocol v 5.0. DNA either from CD3+ or PBC cells or saliva of every patient was used as control DNA in all experiments. No chromosomal abnormality was observed in MSCs whereas the presence of chromosomal rearrangements and trisomy were found in the OBs of about 50% of MM patients. These abnormalities were different to those observed in CD138+ MM cells of the same patients and the percentage of OBs carrying these abnormalities increased in the late culture passages. Finally, the presence of the two known telomere maintenance mechanisms, telomerase activity (TA) and alternative lengthening of telomere (ALT) have been investigated in cultures at early passages of MSCs and OBs. TA was determined using the telomeric repeat amplification protocol, a PCR-based method in which telomerase extends a radiolabeled synthetic primer resembling telomeric DNA, in both fresh and frozen MSC and OB cultures obtained from 9 MM and 4 MGUS patients. ALT was detected by assaying ALT-associated promyelocytic leukaemia (PML) nuclear bodies [APB], using a combined technique of PML immunofluorescence and telomere FISH, in fresh MSC and OB cultures obtained from both MM and MGUS patients. Notably, no evidence of TA and ALT expression was found in all the tested cultures of both MSCs and OBs indicating that both cells do not display malignant transformation. Overall, our preliminary data indicate that in MM patients both MSCs and OBs show transcriptional alterations as compare to controls and OBs may share genomic abnormalities although these are unlike to be correlated with a primary tumoral feature. Disclosures No relevant conflicts of interest to declare.


Forests ◽  
2020 ◽  
Vol 11 (1) ◽  
pp. 90
Author(s):  
Liangbao Jiang ◽  
Man Zhang ◽  
Kaifeng Ma

DNA methylation is one of the best-studied epigenetic modifications involved in many biological processes. However, little is known about the epigenetic mechanism for flower color chimera of Prunus mume (Japanese apricot, mei). Using bisulfate sequencing and RNA sequencing, we analyzed the white (FBW) and red (FBR) petals collected from an individual tree of Japanese apricot cv. ‘Fuban Tiaozhi’ mei to reveal the different changes in methylation patterns associated with gene expression leading to significant difference in anthocyanins accumulation of FBW (0.012 ± 0.005 mg/g) and FBR (0.078 ± 0.013 mg/g). It was found that gene expression levels were positively correlated with DNA methylation levels within gene-bodies of FBW and FBR genomes; however, negative correlations between gene expression and DNA methylation levels were detected within promoter domains. In general, the methylation level within methylome of FBW was higher; and in total, 4,618 differentially methylated regions (DMRs) and 1,212 differentially expressed genes (DEGs) were detected from FBW vs. FBR. We also identified 82 DMR-associated DEGs, and 13 of them, including PmBAHD, PmCYP450, and PmABC, were playing critical roles in phenylalanine metabolism pathway, glycosyltransferase activity, and ABC transporter. The evidence exhibited DNA methylation may regulate gene expression resulting in flower color chimera of Japanese apricot.


2020 ◽  
Author(s):  
Jing Liu ◽  
Ying Zuo ◽  
Gui-Mei Qu ◽  
Xiao Song ◽  
Zhong-Hui Liu ◽  
...  

Abstract BACKGROUND: The molecular pathogenesis of endometrial cancer is not completely understood. CypB upregulated in many cancers, however, its role in endometrial carcinoma has not been studied. Here, we determine the effect of CypB on the growth of endometrial cancer. METHODS: In this study, we examined the expression of CypB in endometrial cancer tissues using immunohistochemistry. CypB silenced in HEC-1-B cell line by shRNA. CCK-8, colony formation assays, wound healing assays, and transwell analysis were performed to assess its effect on tumor cell proliferation and metastasis . Furthermore, microarray analysis was carried out to compare the global mRNA expression profile between the HEC-1-B and CypB-silenced HEC-1-B cells. Gene ontology and KEGG pathway enrichment analysis were performed to determine the potential function of differentially expressed genes related to CypB. RESULTS: We found that CypB was upregulated in endometrial cancer, inhibit CypB expression could significantly suppress cell proliferation, metastasis, and migration. We identified 1536 differentially expressed genes related to CypB (onefold change, p< 0.05), among which 652 genes were upregulated and 884 genes were downregulated. The genes with significant difference in top were mainly enriched in the cell cycle, glycosphingolipid biosynthesis, adherens junctions, and metabolism pathways. CONCLUSIONS: The results of our study suggest that CypB may serve as a novel regulator of endometrial cell proliferation and metastasis, thus representing a novel target for gene-targeted endometrial therapy.Trial registration: YLYLLS [2018] 008. Registered 27 November 2017


Author(s):  
Zhongxiao Lin ◽  
Min Wen ◽  
Enxing Yu ◽  
Xiao Lin ◽  
Hua Wang ◽  
...  

The tumor microenvironment (TME) plays an important role in the growth and invasion of glioma. This study aimed to analyze the composition of the immune microenvironment in glioma samples and analyze the important differentially expressed genes to identify novel immune-targeted therapy for glioma. We downloaded transcriptomic data of 669 glioma samples from The Cancer Genome Atlas database. CIBERSORT and ESTIMATE methods were used to calculate the proportion of tumor-infiltrating immune cells and ratio of immune and stromal components in the TME. The differentially expressed genes (DEGs) were screened by comparing the genes expressed by both stromal and immune cells. Annexin A1 (ANXA1) was determined to be an important prognostic indicator through the common overlap of univariate Cox regression analysis and protein–protein interaction network analysis. The proportion of tumor-infiltrating immune cells, calculated by CIBERSORT algorithm, had a significant difference in distribution among the high and low ANXA1 expression groups, indicating that ANXA1 could be an important immune marker of TME. Furthermore, ANXA1 level was positively correlated with the histopathological factors and negatively related to the survival of glioma patients based on the analysis of multiple databases. Finally, in vitro experiments verified that antagonizing ANXA1 expression promoted cell apoptosis and inhibited the invasion and migration capacities of glioma cells. Therefore, ANXA1 due to its immune-related functions, can be an important prognostic indicator and immune microenvironmental marker for gliomas. Further studies are warranted to confirm ANXA1 as a potential immunotherapeutic target for gliomas.


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