scholarly journals Intraspecific Competitive Interactions Rapidly Evolve Via Spontaneous Mutations

2022 ◽  
Author(s):  
Henning Nottebrock ◽  
Mao-Lun Weng ◽  
Matthew T. Rutter ◽  
Charles B. Fenster
Keyword(s):  
Genetic Variation ◽  
Large Scale ◽  
Community Dynamics ◽  
Seed Set ◽  
Small Scale ◽  
Negative Effects ◽  
Plant Seed ◽  
Fifth Generation ◽  
Population And Community Dynamics ◽  
The Impact

Abstract Using a mechanistic eco-evolutionary trait-based neighborhood-model, we quantify the impact of mutations on intraspecific spatial interactions to better understand mechanisms underlying the maintenance of genetic variation and the potential effects of these evolved interactions on the population dynamics of Arabidopsis thaliana. We use 100 twenty-fifth generation mutation accumulation (MA) lines (genotypes) derived from one founder genotype to study mutational effects on neighbor responses in a field experiment. We created individual-based maps (15,000 individuals), including phenotypic variation, to quantify mutational effects within genotypes versus between genotypes on reproduction and survival. At small-scale (within 80 cm of the focal plant), survival is enhanced but seed-set is decreased when a genotype is surrounded by different genotypes. At large-scale (within 200 cm of the focal plant), seed set is facilitated by different genotypes while the same genotype has either no effect or negative effects. The direction of the interactions among MA lines suggests that at small scale these interactions may contribute to the maintenance of genetic variation and at large scale contribute to the survival of the population. This may suggest, that, mutations potentially have immediate effects on population and community dynamics by influencing the outcome of competitive and faciliatory interactions among conspecifics.

scholarly journals Rapid evolution by spontaneous mutation increases genetic diversity facilitating plant population survival

2018 ◽  
Author(s):  
Henning Nottebrock ◽  
Mao-Lun Weng ◽  
Matthew T Rutter ◽  
Charles B. Fenster
Keyword(s):  
Large Scale ◽  
Community Dynamics ◽  
Spontaneous Mutation ◽  
Rapid Evolution ◽  
Potential Effect ◽  
Small Scale ◽  
Negative Effects ◽  
Population Survival ◽  
Population And Community Dynamics ◽  
The Impact

Using a mechanistic eco-evolutionary trait-based neighborhood-model, we quantify the impact of mutations on spatial interactions to better understand the potential effect of niche evolution through mutations on the population dynamics of Arabidopsis thaliana. We use 100 twenty-fifth generation mutation accumulation (MA) lines (genotypes) derived from one founder genotype to study mutational effects on neighbor responses in a field experiment. We created individual-based maps (15,000 individuals), including phenotypic variation, to quantify mutational effects within genotypes versus between genotypes on reproduction and survival. At small-scale, survival is enhanced but reproduction is decreased when a genotype is surrounded by different genotypes. At large-scale, seed set is facilitated by different genotypes while the same genotype has either no effect or negative effects. Mutations may provide a mechanism for plants to quickly evolve niches and may drive competition, facilitation and selection with profound consequences for future population and community dynamics.

Survey of trematodes in intertidal snails from Patagonia, Argentina: new larval forms and diversity assessment

2018 ◽  
Vol 93 (3) ◽  
pp. 342-351 ◽  
Author(s):  
C. Gilardoni ◽  
G. Di Giorgio ◽  
E. Bagnato ◽  
F. Cremonte
Keyword(s):  
Large Scale ◽  
Community Dynamics ◽  
Life Cycles ◽  
Trematode Species ◽  
Small Scale ◽  
Intermediate Hosts ◽  
Scale Factors ◽  
Diversity Assessment ◽  
Southern Patagonia ◽  
Population And Community Dynamics

AbstractLarval trematodes are the main parasites of snails, and they play a crucial role because they usually castrate their snail hosts and can thus alter their population and community dynamics. This study involved a survey of seven gastropod species (Crepipatella dilatata,Fissurella radiosa,Nacella magellanica,Pareuthria fuscata,Siphonaria lessonii, S. lateralisandTrophon geversianus) parasitized by 12 trematode species (one hemiurid, one gymnophallid, two lepocreadiids, two microphallids, one notocotylid, two renicolids, one philophtalmid, one schistosomatid and one zoogonid) from southern Patagonia (47°S, 65°W), Argentina. OnlyF. radiosawas free of parasites. The study included the description of five new larvae, based on morphological and molecular information, and a comparison of the parasite diversity with that of a northern locality (42°S, 64°W), characterized by a lower mollusc diversity. Species richness and diversity of parasites were higher in the southern site. This suggests a correlation between the level of parasitism and the diversity of molluscs (first intermediate hosts), which is higher at the high-latitude site and seems to attract shorebirds, which disperse the digenean eggs and facilitate the completion of their life cycles. These results support the notion that parasitism is influenced by large-scale factors such as biogeographical patterns, and small-scale factors such as diversity or abundance of intermediate and definitive hosts.

scholarly journals Climate SPHINX: evaluating the impact of resolution and stochastic physics parameterisations in the EC-Earth global climate model

2017 ◽  
Vol 10 (3) ◽  
pp. 1383-1402 ◽  
Author(s):  
Paolo Davini ◽  
Jost von Hardenberg ◽  
Susanna Corti ◽  
Hannah M. Christensen ◽  
Stephan Juricke ◽  
...  
Keyword(s):  
High Resolution ◽  
Large Scale ◽  
Climate Model ◽  
Global Climate ◽  
Rainfall Variability ◽  
Global Climate Model ◽  
Small Scale ◽  
Low Resolution ◽  
The Impact ◽  
Stochastic Physics

Abstract. The Climate SPHINX (Stochastic Physics HIgh resolutioN eXperiments) project is a comprehensive set of ensemble simulations aimed at evaluating the sensitivity of present and future climate to model resolution and stochastic parameterisation. The EC-Earth Earth system model is used to explore the impact of stochastic physics in a large ensemble of 30-year climate integrations at five different atmospheric horizontal resolutions (from 125 up to 16 km). The project includes more than 120 simulations in both a historical scenario (1979–2008) and a climate change projection (2039–2068), together with coupled transient runs (1850–2100). A total of 20.4 million core hours have been used, made available from a single year grant from PRACE (the Partnership for Advanced Computing in Europe), and close to 1.5 PB of output data have been produced on SuperMUC IBM Petascale System at the Leibniz Supercomputing Centre (LRZ) in Garching, Germany. About 140 TB of post-processed data are stored on the CINECA supercomputing centre archives and are freely accessible to the community thanks to an EUDAT data pilot project. This paper presents the technical and scientific set-up of the experiments, including the details on the forcing used for the simulations performed, defining the SPHINX v1.0 protocol. In addition, an overview of preliminary results is given. An improvement in the simulation of Euro-Atlantic atmospheric blocking following resolution increase is observed. It is also shown that including stochastic parameterisation in the low-resolution runs helps to improve some aspects of the tropical climate – specifically the Madden–Julian Oscillation and the tropical rainfall variability. These findings show the importance of representing the impact of small-scale processes on the large-scale climate variability either explicitly (with high-resolution simulations) or stochastically (in low-resolution simulations).

scholarly journals Geographical and logistical factors of sustainable development of rural tourism in the context of regional economy

2016 ◽  
pp. 9-14
Author(s):  
I. Smyrnov
Keyword(s):  
Sustainable Development ◽  
Large Scale ◽  
Regional Economy ◽  
Local Economy ◽  
Rural Tourism ◽  
Small Scale ◽  
Resource Base ◽  
Tourist Flows ◽  
Definition Of ◽  
The Impact

Rural tourism is now seen as an important direction of development of the regional economy. From the perspective of sustainable development rural tourism affects the economic, social and environmental aspects of the regional and local economy. Rural tourism is closely linked with agrotourism, eco-tourism, natural tourism and so on. Sustainable rural tourism can be realized by applying logistic, geographic and marketing approaches as components of sustainable development strategies. Logistics approach is determined by logistic potential of resource base of rural tourism and appropriate tourist flows regulation. In this context in the article the concept of tourism capacity or capacity of the resource base of rural tourism is used. The problem of the definition of tourism pressure on the resource base of rural tourism, particularly in natural landscapes is disclosed. Unlike environmental and recrealogical sciences, which stop at the capacity definition of the resource base of tourism, tourism logistics compares this figure with the existing tourist flows and accordingly determines the safe way of tourism management to ensure its sustainable nature. It was shown that these strategies boil down to two basic types – the further development of tourism in a particular area or limit such activities to conserve the resource base of tourism. Recreational (travel) load is the indicator that reflects the impact of tourism on the resource base of tourism (especially landscape complex), expressed by the number of tourists or tourists-days per area unit or per tourist site for the certain period of time (day, month, season year). There are actual, allowable (the maximum) and destructive (dangerous) types of travel load. The latter can lead recreational area or resource base of rural tourism to destruction. Thus, depending on the intensity of tourism resource base using in rural tourism it may change – according to tourist consumption. Large number of tourists affects the entire range of recreational destinations and their individual components. The most vulnerable part of the environment in this sense is vegetation, except that significant changes may occur with soil, water bodies, air and so on. The geographic dimension of the problem of rural tourism sustainable development includes the concept of zoning, ie the division of the territory, offering to develop rural tourism in several zones with different modes of travel usage – from a total ban (in protected areas) for complete freedom with transitional stages, involving various limit degrees in the development of rural tourism. Marketing approach reflects the application of the curve R. Butler to the stages of development of rural tourism destinations with the release of such steps as: research, involvement, development, consolidation, stagnation (also called “saturation”), revival or decline. Shown the models that link the stage of resource base tourist development (under “Curve Butler”), strength of tourism consumption the magnitude of such effects (eg weak (disperse) impact in large scale, strong (concentrated) impact in large scale, strong (concentrated) impact in small scale, weak (disperse) impact in small scale), dynamics of tourism development at the territory.

scholarly journals Climate SPHINX: evaluating the impact of resolution and stochastic physics parameterisations in climate simulations

2016 ◽  
Author(s):  
Paolo Davini ◽  
Jost von Hardenberg ◽  
Susanna Corti ◽  
Hannah M. Christensen ◽  
Stephan Juricke ◽  
...  
Keyword(s):  
High Resolution ◽  
Large Scale ◽  
Rainfall Variability ◽  
Pilot Project ◽  
Small Scale ◽  
Low Resolution ◽  
Climate Simulations ◽  
Advanced Computing ◽  
The Impact ◽  
Stochastic Physics

Abstract. The Climate SPHINX (Stochastic Physics HIgh resolutioN eXperiments) project is a comprehensive set of ensemble simulations aimed at evaluating the sensitivity of present and future climate to model resolution and stochastic parameterisation. The EC-Earth Earth-System Model is used to explore the impact of stochastic physics in a large ensemble of 30-year climate integrations at five different atmospheric horizontal resolutions (from 125 km up to 16 km). The project includes more than 120 simulations in both a historical scenario (1979–2008) and a climate change projection (2039–2068), together with coupled transient runs (1850–2100). A total of 20.4 million core hours have been used, made available from a single year grant from PRACE (the Partnership for Advanced Computing in Europe), and close to 1.5 PBytes of output data have been produced on SuperMUC IBM Petascale System at the Leibniz Supercomputing Center (LRZ) in Garching, Germany. About 140 TBytes of post-processed data are stored on the CINECA supercomputing center archives and are freely accessible to the community thanks to an EUDAT Data Pilot project. This paper presents the technical and scientific setup of the experiments, including the details on the forcing used for the simulations performed, defining the SPHINX v1.0 protocol. In addition, an overview of preliminary results is given: an improvement in the simulation of Euro-Atlantic atmospheric blocking following resolution increases is observed. It is also shown that including stochastic parameterisation in the low resolution runs helps to improve some aspects of the tropical climate – specifically the Madden-Julian Oscillation and the tropical rainfall variability. These findings show the importance of representing the impact of small scale processes on the large scale climate variability either explicitly (with high resolution simulations) or stochastically (in low resolution simulations).

Metagenomic and Metatranscriptomic Responses of Chemical Dispersant Application during a Marine Dilbit Spill

2022 ◽  
Author(s):  
Yiqi Cao ◽  
Baiyu Zhang ◽  
Charles W. Greer ◽  
Kenneth Lee ◽  
Qinhong Cai ◽  
...  
Keyword(s):  
Microbial Community ◽  
Late Stage ◽  
Large Scale ◽  
Community Dynamics ◽  
Early Stage ◽  
Small Scale ◽  
Rrna Gene ◽  
Shotgun Metagenomics ◽  
Microcosm Studies ◽  
Over Time

The global increase in marine transportation of dilbit (diluted bitumen) can increase the risk of spills, and the application of chemical dispersants remains a common response practice in spill events. To reliably evaluate dispersant effects on dilbit biodegradation over time, we set large-scale (1500 mL) microcosms without nutrients addition using low dilbit concentration (30 ppm). Shotgun metagenomics and metatranscriptomics were deployed to investigate microbial community responses to naturally and chemically dispersed dilbit. We found that the large-scale microcosms could produce more reproducible community trajectories than small-scale (250 mL) ones based on the 16S rRNA gene amplicon sequencing. In the early-stage large-scale microcosms, multiple genera were involved into the biodegradation of dilbit, while dispersant addition enriched primarily Alteromonas and competed for the utilization of dilbit, causing depressed degradation of aromatics. The metatranscriptomic based Metagenome Assembled Genomes (MAG) further elucidated early-stage microbial antioxidation mechanism, which showed dispersant addition triggered the increased expression of the antioxidation process genes of Alteromonas species. Differently, in the late stage, the microbial communities showed high diversity and richness and similar compositions and metabolic functions regardless of dispersant addition, indicating the biotransformation of remaining compounds can occur within the post-oil communities. These findings can guide future microcosm studies and the application of chemical dispersants for responding to a marine dilbit spill. Importance In this study, we employed microcosms to study the effects of marine dilbit spill and dispersant application on microbial community dynamics over time. We evaluated the impacts of microcosm scale and found that increasing the scale is beneficial for reducing community stochasticity, especially in the late stage of biodegradation. We observed that dispersant application suppressed aromatics biodegradation in the early stage (6 days) whereas exerting insignificant effects in the late stage (50 days), from both substances removal and metagenomic/metatranscriptomic perspectives. We further found that Alteromonas species are vital for the early-stage chemically dispersed oil biodegradation, and clarified their degradation and antioxidation mechanisms. The findings would help to better understand microcosm studies and microbial roles for biodegrading dilbit and chemically dispersed dilbit, and suggest that dispersant evaluation in large-scale systems and even through field trails would be more realistic after marine oil spill response.

Error Recovery for SLA-Based Workflows within the Business Grid

2012 ◽  
pp. 1349-1375
Author(s):  
Dang Minh Quan ◽  
Jörn Altmann ◽  
Laurence T. Yang
Keyword(s):  
Large Scale ◽  
Service Level Agreement ◽  
Error Recovery ◽  
Service Level ◽  
Small Scale ◽  
Grid System ◽  
Negative Effects ◽  
Recovery Mechanism ◽  
Recovery Mechanisms ◽  
Grid Based

This chapter describes the error recovery mechanisms in the system handling the Grid-based workflow within the Service Level Agreement (SLA) context. It classifies the errors into two main categories. The first is the large-scale errors when one or several Grid sites are detached from the Grid system at a time. The second is the small-scale errors which may happen inside an RMS. For each type of error, the chapter introduces a recovery mechanism with the SLA context imposing the goal to the mechanisms. The authors believe that it is very useful to have an error recovery framework to avoid or eliminate the negative effects of the errors.

Will Different Scales Impact on Design Collaboration in 3D Virtual Environments?

2012 ◽  
pp. 185-198
Author(s):  
Jerry Jen-Hung Tsai ◽  
Jeff WT Kan ◽  
Xiangyu Wang ◽  
Yingsiu Huang
Keyword(s):  
Virtual Environments ◽  
Large Scale ◽  
Protocol Analysis ◽  
Small Scale ◽  
Design Collaboration ◽  
The Difference ◽  
Communication Control ◽  
The Impact ◽  
3D Virtual Environments ◽  
Electronic Circuit Design

This chapter presents a study on the impact of design scales on collaborations in 3D virtual environments. Different domains require designers to work on different scales; for instance, urban design and electronic circuit design operate at very different scales. However, the understanding of the effects of scales upon collaboration in virtual environment is limited. In this chapter, the authors propose to use protocol analysis method to examine the differences between two design collaboration projects in virtual environments: one large scale, and another small scale within a similar domain. It shows that the difference in scale impacted more on communication control and social communication.

scholarly journals The Impact of Using Small-Scale Irrigation Motor Pumps on Farmers’ Household Incomes in Ethiopia: A Quasi-Experimental Approach

2020 ◽  
Vol 12 (19) ◽  
pp. 8142
Author(s):  
Wubamlak Ayichew Workneh ◽  
Jun Takada ◽  
Shusuke Matsushita
Keyword(s):  
Rural Areas ◽  
Large Scale ◽  
Irrigation System ◽  
Poverty Rate ◽  
Average Treatment Effect ◽  
Small Scale ◽  
Growth Data ◽  
Canal Irrigation ◽  
The Impact ◽  
Small Scale Irrigation

Sectoral economic growth data in Ethiopia show that the agriculture sector has the lowest growth, which is caused by frequent drought and inefficient technologies, among other factors. As a result, the productivities of land and labor, as well as the income of small-scale farm households, are very low, and rural areas have a relatively high poverty rate. A quasi-experiment was applied to understand the impact of using small-scale irrigation motor pumps on farmers’ livelihood improvement. Specifically, a survey was conducted in 2019 on a sample of 92 small-scale irrigation motor pump and canal irrigation users as the treatment and control groups. The weighted propensity score matching method was applied to eliminate initial differences and adjust sampling proportions across the groups. Based on the average treatment effect on the treated estimation results, we cannot state that the mean income difference in small-scale irrigation motor pump users and canal irrigation system users is different from zero. This indicates that countries with little capital to invest in large-scale irrigation projects can introduce household-level small-scale irrigation motor pumps to improve farmers’ incomes.

scholarly journals Nitrification of the lowermost stratosphere during the exceptionally cold Arctic winter 2015–2016

2019 ◽  
Vol 19 (21) ◽  
pp. 13681-13699 ◽  
Author(s):  
Marleen Braun ◽  
Jens-Uwe Grooß ◽  
Wolfgang Woiwode ◽  
Sören Johansson ◽  
Michael Höpfner ◽  
...  
Keyword(s):  
Nitric Acid ◽  
Cross Sections ◽  
Large Scale ◽  
Potential Temperature ◽  
Lagrangian Model ◽  
The Arctic ◽  
Small Scale ◽  
Mixing Ratios ◽  
Fine Structures ◽  
The Impact

Abstract. The Arctic winter 2015–2016 was characterized by exceptionally low stratospheric temperatures, favouring the formation of polar stratospheric clouds (PSCs) from mid-December until the end of February down to low stratospheric altitudes. Observations by GLORIA (Gimballed Limb Observer for Radiance Imaging of the Atmosphere) on HALO (High Altitude and LOng range research aircraft) during the PGS (POLSTRACC–GW-LCYCLE II–SALSA) campaign from December 2015 to March 2016 allow the investigation of the influence of denitrification on the lowermost stratosphere (LMS) with a high spatial resolution. Two-dimensional vertical cross sections of nitric acid (HNO3) along the flight track and tracer–tracer correlations derived from the GLORIA observations document detailed pictures of wide-spread nitrification of the Arctic LMS during the course of an entire winter. GLORIA observations show large-scale structures and local fine structures with enhanced absolute HNO3 volume mixing ratios reaching up to 11 ppbv at altitudes of 13 km in January and nitrified filaments persisting until the middle of March. Narrow coherent structures tilted with altitude of enhanced HNO3, observed in mid-January, are interpreted as regions recently nitrified by sublimating HNO3-containing particles. Overall, extensive nitrification of the LMS between 5.0 and 7.0 ppbv at potential temperature levels between 350 and 380 K is estimated. The GLORIA observations are compared with CLaMS (Chemical Lagrangian Model of the Stratosphere) simulations. The fundamental structures observed by GLORIA are well reproduced, but differences in the fine structures are diagnosed. Further, CLaMS predominantly underestimates the spatial extent of HNO3 maxima derived from the GLORIA observations as well as the overall nitrification of the LMS. Sensitivity simulations with CLaMS including (i) enhanced sedimentation rates in case of ice supersaturation (to resemble ice nucleation on nitric acid trihydrate (NAT)), (ii) a global temperature offset, (iii) modified growth rates (to resemble aspherical particles with larger surfaces) and (iv) temperature fluctuations (to resemble the impact of small-scale mountain waves) slightly improved the agreement with the GLORIA observations of individual flights. However, no parameter could be isolated which resulted in a general improvement for all flights. Still, the sensitivity simulations suggest that details of particle microphysics play a significant role for simulated LMS nitrification in January, while air subsidence, transport and mixing become increasingly important for the simulated HNO3 distributions towards the end of the winter.

Sign in / Sign up

Export Citation Format

Share Document