scholarly journals Potential remediators in the rice production area of Zambales, Philippines contaminated with mine tailing

2022 ◽  
Author(s):  
Perfecto Salvador Ramos ◽  
Oliver Escaño Manangkil
Keyword(s):  
Bacterial Species ◽  
Centella Asiatica ◽  
Its Region ◽  
Fungal Species ◽  
Curvularia Lunata ◽  
High Concentration ◽  
Rna Sequences ◽  
Cyperus Difformis ◽  
Biological Tool ◽  
Cadmium And Lead

Abstract High concentration of cadmium and lead are hazardous to environment. The study isolated and identified potential fungal, bacterial and hyperaccumulating plants as bioremediators in contaminated rice ecosystem. Fungi were identified morphologically and with the use of internal transcribed spacer (ITS) region sequencing. Bacteria were identified using 16S ribosomal RNA sequences. Plants were analyzed for Cadmium and Lead accumulation in root and shoot tissues using atomic absorption spectrophotometer (AAS). Fungal species including Penicillium janthinellum, Trichoderma hamatum, Trichoderma harzianum, and Curvularia lunata along with bacterial species such as Bacillus cereus, Bacillus thuringiensis, Pseudomonas gessardii, Lysinibacillus xylanilyticus, Lysinibacillus sphaericus, and two species of unidentified bacteria were identified. Plants predominant in the area includes Cyperus difformis, Scirpus juncoides, Fimbristylis miliacea, Centella asiatica, Sphagneticola trilobata, and Monochoria vaginalis. Cadmium was detected in the shoots of S. trilobata (3.2 mg kg−1) and roots of C. asiatica (3.6 mg kg−1). Lead was found in the shoots of C. asiatica (2.8 mg kg−1) and roots of both S. juncoides (15.00 mg kg−1) and F. miliacea (15.00 mg kg−1). Phytoremediation potential of S. juncoides, F. miliacea, C. asiatica and S. trilobata was observed. Heavy metal resistant microbes can be harnessed as a very useful biological tool for in-situ bioremediation.

Chemical traits and antimicrobial activity of endemic Teucrium arduini L. from Mt Biokovo (Croatia)

2012 ◽  
Vol 7 (5) ◽  
pp. 941-947 ◽  
Author(s):  
Dario Kremer ◽  
Ivna Müller ◽  
Valerija Dunkić ◽  
Dubravka Vitali ◽  
Edith Stabentheiner ◽  
...  
Keyword(s):  
Antimicrobial Activity ◽  
Essential Oils ◽  
Bacterial Species ◽  
Glandular Trichomes ◽  
Toxic Metal ◽  
Antimicrobial Activities ◽  
Fungal Species ◽  
High Concentration ◽  
Sesquiterpene Hydrocarbons ◽  
Chemical Traits

AbstractChemical composition of the essential oil (analysed by GC-FID and GC-MS), the content of macroelements and trace elements (analysed by ICP-AES), and antimicrobial activities were investigated in Teucrium arduini L. from Mt Biokovo (Croatia). Additionally, a study on the types and distribution of glandular trichomes which produce essential oils was investigated. The oil was characterized by a high concentration of sesquiterpene hydrocarbons (68.5%) of which β-caryophyllene (32.9%) and germacrene D (16.4%) being the major compounds. Among the macroelements, the content of calcium was the highest (9772 mg/kg), while the content of sodium was the smallest (117.74 mg/kg). Among the micronutrients, the most represented element was iron (72.07 mg/kg). The content of each investigated toxic metal (As, Hg, Pb, Cd and Cr) was below permissible levels. The essential oils showed antimicrobial activity against bacterial species tested, with MIC values ranging from 6.25 mg/mL to 37.50 mg/mL. Fungal species were susceptible with MIC values from 7.81 mg/mL and 25.00 mg/mL.

scholarly journals The Isolation and Molecular Identification of Bacterial and Fungal Species from Potato Fields of Indore District of Madhya Pradesh

2019 ◽  
Vol 9 (4-s) ◽  
pp. 1207-1209
Author(s):  
Reena Sastiya ◽  
S.M.A. Naqvi ◽  
N.K. Jain
Keyword(s):  
Bacillus Subtilis ◽  
Molecular Identification ◽  
Soil Microorganisms ◽  
Plant Root ◽  
Bacterial Species ◽  
Its Region ◽  
Fungal Species ◽  
Madhya Pradesh ◽  
Healthy Plant ◽  
16S Gene

The microorganisms of rhizosphere play an important role in development of healthy plant. The rhizosphere is the specific fine region of soil that is directly in contact with soil microorganisms and significantly influenced by root secretions. In present study we have studied the microflora of Potato fields of Indore district of Madhya Pradesh. The sampling of soil from rhizosphere using a soil corer with a diameter of 3 cm at a depth of 0–20 cm and sampling of plant root materials as rhizoplane were collected three times: during seedling stage, peak of vegetative growth and fruiting of potato (October/November to February/March) from potato fields of Indore district of Madhya Pradesh. The samples were serial diluted and streaked over the Nutrient Agar and PDA media Plates for the isolation of Bacterial and Fungus. For the identification of Cultured bacterial and fungal species were further analyzed by morphological and Molecular analysis using PCR and sequencing of 16S and ITS region of Bacteria and Fungus species. We reported various types of bacterial (Pseudomonas fluorescens, Pseudomonas aerogenosa, Bacillus subtilis, Pseudomonas putida etc.) and fungal species (Species of Penicillium and Trichoderma etc.) which are required for the development of healthy plant and protection of potato plant from other pathogens. Keywords: Bacterial species, Fungal species, Molecular identification, 16S Gene.

scholarly journals Screening of Microflora Associated with Brinjal Seeds (Solanum melongena L.) in Western Part of India

2021 ◽  
Vol 8 (1) ◽  
pp. 7-12
Author(s):  
Dr. D K Sharma ◽  
Dr. Nandini Sharma
Keyword(s):  
Bacterial Species ◽  
Agar Plate ◽  
Solanum Melongena ◽  
Fungal Species ◽  
High Yield ◽  
Curvularia Lunata ◽  
Seedling Mortality ◽  
Rhizopus Nigricans ◽  
Rhizoctonia Bataticola ◽  
Seed Surface

Total 110 seed samples of brinjal (Solanum melongena L.) were collected from 12 major growing districts of Rajasthan and subjected to dry seed examination (DSE). DSE revealed asymptomatic (07.75-97.5%), moderately discolored (04.50-67.50%) and shriveled discolored (03.25-38.75%) seeds. Symptomatic seeds in DSE showed various types of discolorations, deformation like white crust on seed surface. The seeds with water soaked symptoms and spots on seed surface were also observed such seeds on incubation yielded bacterial species. The incubation of symptomatic seeds about 21 fungal species of 14 genera and 3 bacterial species were observed viz. Alternaria alternata, A. solani, Aspergillus flavus, A. niger, Cladosporium oxysporium, Curvularia lunata, Fusarium oxysporium, F. solani, Rhizoctonia bataticola and Rhizopus nigricans etc and bacterial species like Xanthomonas axonopodis var. vesicatoria, Ralstonia solanacearum and Pseudomonas aeruginosa. The microflora severely affects seed germination (failure or delayed germination), wilting and rotting of seedlings, bacterial oozing, collapse of hypocotyls and cotyledonary leaves which resulting seedling mortality. High yield of microflora was obtained on standard blotter method (SBM) and agar plate method (APM).   

Substituted 6,7-dimethoxy-5-oxo-2,3,5,9b-tetrahydrothiazolo[2,3-a]isoindole- 3-1,1-dioxide Derivatives with Antimicrobial Activity and Docking Assisted Prediction of the Mechanism of their Antibacterial and Antifungal Properties

2020 ◽  
Vol 20 (29) ◽  
pp. 2681-2691
Author(s):  
Athina Geronikaki ◽  
Victor Kartsev ◽  
Phaedra Eleftheriou ◽  
Anthi Petrou ◽  
Jasmina Glamočlija ◽  
...  
Keyword(s):  
Antimicrobial Activity ◽  
Antifungal Activity ◽  
Drug Targets ◽  
Bacterial Species ◽  
Pharmaceutical Research ◽  
Docking Studies ◽  
Fungal Species ◽  
Docking Analysis ◽  
E Coli ◽  
Antibacterial And Antifungal

Background: Although a great number of the targets of antimicrobial therapy have been achieved, it remains among the first fields of pharmaceutical research, mainly because of the development of resistant strains. Docking analysis may be an important tool in the research for the development of more effective agents against specific drug targets or multi-target agents 1-3. Methods: In the present study, based on docking analysis, ten tetrahydrothiazolo[2,3-a]isoindole derivatives were chosen for the evaluation of the antimicrobial activity. Results: All compounds showed antibacterial activity against eight Gram-positive and Gram-negative bacterial species being, in some cases, more potent than ampicillin and streptomycin against all species. The most sensitive bacteria appeared to be S. aureus and En. Cloacae, while M. flavus, E. coli and P. aeruginosa were the most resistant ones. The compounds were also tested for their antifungal activity against eight fungal species. All compounds exhibited good antifungal activity better than reference drugs bifonazole (1.4 – 41 folds) and ketoconazole (1.1 – 406 folds) against all fungal species. In order to elucidate the mechanism of action, docking studies on different antimicrobial targets were performed. Conclusion: According to docking analysis, the antifungal activity can be explained by the inhibition of the CYP51 enzyme for most compounds with a better correlation of the results obtained for the P.v.c. strain (linear regression between estimated binding Energy and log(1/MIC) with R 2 =0.867 and p=0.000091 or R 2 = 0.924, p= 0.000036, when compound 3 is excluded.

scholarly journals I Like the Way You Eat It: Lemur (Indri indri) Gut Mycobiome and Geophagy

2021 ◽  
Author(s):  
Luigimaria Borruso ◽  
Alice Checcucci ◽  
Valeria Torti ◽  
Federico Correa ◽  
Camillo Sandri ◽  
...  
Keyword(s):  
Plant Material ◽  
Soil Characteristics ◽  
Nutrient Supply ◽  
Fungal Species ◽  
High Concentration ◽  
Beneficial Role ◽  
Intimate Connection ◽  
Indri Indri ◽  
Lemur Species

AbstractHere, we investigated the possible linkages among geophagy, soil characteristics, and gut mycobiome of indri (Indri indri), an endangered lemur species able to survive only in wild conditions. The soil eaten by indri resulted in enriched secondary oxide-hydroxides and clays, together with a high concentration of specific essential micronutrients. This could partially explain the role of the soil in detoxification and as a nutrient supply. Besides, we found that soil subject to geophagy and indris’ faeces shared about 8.9% of the fungal OTUs. Also, several genera (e.g. Fusarium, Aspergillus and Penicillium) commonly associated with soil and plant material were found in both geophagic soil and indri samples. On the contrary, some taxa with pathogenic potentials, such as Cryptococcus, were only found in indri samples. Further, many saprotrophs and plant-associated fungal taxa were detected in the indri faeces. These fungal species may be involved in the digestion processes of leaves and could have a beneficial role in their health. In conclusion, we found an intimate connection between gut mycobiome and soil, highlighting, once again, the potential consequent impacts on the wider habitat.

scholarly journals Morpho-molecular identification and first report of Fusarium equiseti in causing chilli wilt from Kashmir (Northern Himalayas)

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Ammarah Hami ◽  
Rovidha S. Rasool ◽  
Nisar A. Khan ◽  
Sheikh Mansoor ◽  
Mudasir A. Mir ◽  
...  
Keyword(s):  
Dna Barcoding ◽  
Pcr Amplification ◽  
Its Region ◽  
Fungal Species ◽  
Pathogenicity Test ◽  
Kashmir Valley ◽  
Fusarium Equiseti ◽  
Infected Root ◽  
Fusarium Sp ◽  
High Degree

AbstractChilli (Capsicum annuum L.) is one of the most significant vegetable and spice crop. Wilt caused by Fusarium Sp. has emerged as a serious problem in chilli production. Internal transcribed spacer (ITS) region is widely used as a DNA barcoding marker to characterize the diversity and composition of Fusarium communities. ITS regions are heavily used in both molecular methods and ecological studies of fungi, because of its high degree of interspecific variability, conserved primer sites and multiple copy nature in the genome. In the present study we focused on morphological and molecular characterization of pathogen causing chilli wilt. Chilli plants were collected from four districts of Kashmir valley of Himalayan region. Pathogens were isolated from infected root and stem of the plants. Isolated pathogens were subjected to DNA extraction and PCR amplification. The amplified product was sequenced and three different wilt causing fungal isolates were obtained which are reported in the current investigation. In addition to Fusarium oxysporum and Fusarium solani, a new fungal species was found in association with the chilli wilt in Kashmir valley viz., Fusarium equiseti that has never been reported before from this region. The studies were confirmed by pathogenicity test and re-confirmation by DNA barcoding.

scholarly journals Microbial Communities, Metabolites, Fermentation Quality and Aerobic Stability of Whole-Plant Corn Silage Collected from Family Farms in Desert Steppe of North China

Processes ◽  
2021 ◽  
Vol 9 (5) ◽  
pp. 784
Author(s):  
Chao Wang ◽  
Lin Sun ◽  
Haiwen Xu ◽  
Na Na ◽  
Guomei Yin ◽  
...  
Keyword(s):  
Microbial Communities ◽  
Bacterial Diversity ◽  
Fungal Diversity ◽  
North China ◽  
Bacterial Species ◽  
Fungal Species ◽  
Family Farms ◽  
Aerobic Stability ◽  
Whole Plant ◽  
Lactobacillus Kefiri

Whole-plant corn silages on family farms were sampled in Erdos (S1), Baotou (S2), Ulanqab (S3), and Hohhot (S4) in North China, after 300 d of ensiling. The microbial communities, metabolites, and aerobic stability were assessed. Lactobacillusbuchneri, Acinetobacter johnsonii, and unclassified Novosphingobium were present at greater abundances than others in S2 with greater bacterial diversity and metabolites. Lactobacillus buchneri, Lactobacillus parafarraginis, Lactobacillus kefiri, and unclassified Lactobacillus accounted for 84.5%, and 88.2%, and 98.3% of bacteria in S1, S3, and S4, respectively. The aerobic stability and fungal diversity were greater in S1 and S4 with greater abundances of unclassified Kazachstania, Kazachstania bulderi, Candida xylopsoci, unclassified Cladosporium, Rhizopus microspores, and Candida glabrata than other fungi. The abundances of unclassified Kazachstania in S2 and K. bulderi in S3 were 96.2% and 93.6%, respectively. The main bacterial species in S2 were L. buchneri, A. johnsonii, and unclassified Novosphingobium; Lactobacillus sp. dominated bacterial communities in S1, S3, and S4. The main fungal species in S1 and S4 were unclassified Kazachstania, K. bulderi, C. xylopsoci, unclassified Cladosporium, R. microspores, and C. glabrata; Kazachstania sp. dominated fungal communities in S2 and S3. The high bacterial diversity aided the accumulation of metabolites, and the broad fungal diversity improved the aerobic stability.

scholarly journals Variation of rhizosphere microbial community in continuous mono-maize seed production

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Yunchen Zhao ◽  
Wenjiang Fu ◽  
Changwei Hu ◽  
Guangquan Chen ◽  
Zhanwen Xiao ◽  
...  
Keyword(s):  
Microbial Community ◽  
Seed Production ◽  
Disease Incidence ◽  
Bacterial Species ◽  
Curvularia Lunata ◽  
Continuous Cropping ◽  
Maize Seed ◽  
Bacterial Phyla ◽  
Soil Microbial ◽  
Pathogen Invasion

AbstractSoil microbe is crucial to a healthy soil, therefore its diversities and abundances under different conditions are still need fully understand.The aims of the study were to characterize the community structure and diversity of microbe in the rhizosphere soil after continuous maize seed production, and the relationship between the disease incidence of four diseases and the variation of the rhizosphere microbe. The results showed that different fungal and bacterial species were predominant in different cropping year, and long-term maize seed production had a huge impact on structure and diversity of soil microbial. Ascomycota and Mortierellomycota were the dominant fungal phyla and Mortierella and Ascomycetes represented for a large proportion of genus. A relative increase of Fusarium and Gibberella and a relative decrease of Mortierella, Chrysosporium, Podospora, and Chaetomium were observed with the increase of cropping year. Pathogenic Fusarium, Curvularia, Curvularia-lunata, Cladosporium, Gibberella-baccata, and Plectosphaerellaceae were over-presented and varied at different continuous cropping year, led to different maize disease incidence. Proteobacteria and Actinobacteria ranked in the top two of all bacterial phyla, and genus Pseudarthrobacter, Roseiflexus and RB41 dominated top 3. Haliangium and Streptomyces decreased with the continuous cropping year and mono-cropping of maize seed production increased disease incidence with the increase of cropping year, while the major disease was different. Continuous cropping of maize seed production induced the decrease of protective microbe and biocontrol genera, while pathogenic pathogen increased, and maize are in danger of pathogen invasion. Field management show great effects on soil microbial community.

scholarly journals STUDIES ON THE BACTERIOPHAGE OF D'HERELLE

1925 ◽  
Vol 42 (4) ◽  
pp. 483-497 ◽  
Author(s):  
Jacques J. Bronfenbrenner ◽  
Charles Korb
Keyword(s):  
Quantitative Evaluation ◽  
Bacterial Species ◽  
Relative Concentration ◽  
Serial Dilution ◽  
The Other ◽  
Resistant Bacteria ◽  
Dilution Method ◽  
High Concentration ◽  
Average Size ◽  
Broth Dilution

The experiments reported above confirm the fact that lytic principle is distributed in active solution in a state of indivisible units. This permits its quantitative evaluation by serial dilution, as well as by plating on agar. The latter method, however, often gives readings considerably lower than those obtained by the broth dilution method of titration. By varying the concentration of agar it has been possible to show that the discrepancy is due to adsorption of the lytic agent on agar. When the concentration of the latter is increased from 0.3 per cent to 2.5 per cent the number of plaques of lysis is reduced more than 100 times. At the same time the average size of the plaques also decreases approximately to one-tenth of the original. The size, as well as the number of plaques, has been found to depend also on the condition of the culture employed in titration. Thus, when the culture exposed to the action of lytic agent is composed of young susceptible bacteria, the greater the concentration of bacteria, the smaller the plaques. When the culture is composed partly of young and partly of old susceptible bacteria, both the size and the number of the plaques are diminished with the increase in the relative concentration of old bacteria. On the other hand, presence in the culture of resistant bacteria does not affect either the size or the number of the plaques so long as the relative concentration of susceptible bacteria in the culture is sufficient to allow formation of them. The plaques appearing in the presence of a high concentration of resistant variants in the culture are relatively indistinct owing to overgrowth. Under carefully controlled conditions the size of plaques is found to be determined by the character of the lytic filtrate. Thus in the case of lytic agents which act upon more than one bacterial species the size of the plaques remains constant, irrespective of the bacterial substratum used for the production of the active filtrate.

Screening and Identification of Laccase Producing Fungi from Environmental Samples

2021 ◽  
Vol 6 (1) ◽  
pp. 91-98
Author(s):  
A. Bello ◽  
◽  
J. B. Ameh ◽  
D. A. Machido ◽  
A. I. Mohammed-Dabo
Keyword(s):  
Tannic Acid ◽  
Fungal Species ◽  
Soil Samples ◽  
Potato Dextrose Agar ◽  
Laccase Production ◽  
Curvularia Lunata ◽  
Main Campus ◽  
Fungal Isolates ◽  
Screening And Identification ◽  
Decaying Wood

Laccases are oxidases with broad substrate specificity and ability to oxidize various phenolic and non-phenolic compounds. This study was carried out to isolate and characterizes laccase producing fungi from environment samples. Soil and decaying wood samples were collected from different locations within Ahmadu Bello University, Zaria Main campus. Suspensions of the samples (1 g in 10 mL sterile distilled water) were serially diluted, inoculated onto Potato Dextrose Agar (PDA) containing 0.01% Chloramphenicol and incubated for 7 days at 30oC.The fungal isolates were characterized macroscopically and microscopically with the aid of an atlas. The identified fungal isolates were screened for laccase production by inoculating onto PDA containing 0.02% Guaiacol, 1mM ABTS (2 2’-azino-bis (3-ethylbenzthiazoline-6-sulfonic acid) and 0.5% Tannic acid as indicator compounds and incubated at 250C for 7 days. The laccase producing isolates were confirmed molecularly by ITS rDNA sequence analysis using the FASTA algorithm with the Fungus database from the European Bioinformatics Institute (EBI).A total of 25 fungal species (11 from soil and 14 from decaying wood samples) were isolated. Two isolates from the soil origin identified as Curvularia lunata SSI7 (Accession No. QIE06317.1) and Fusarium clade VII SSI3 (Accession No. GQ505677) were found to produce laccase where Curvularia lunata SSI7 was able to oxidize all the indicator compounds used for the screening. Fusarium clade VII SSI3 was able to oxidize only 0.5% Tannic acid. Laccase producing Curvularia lunata and Fusarium clade VII were isolated from soil samples collected from ABU Zaria Main Campus. Keywords: laccase, fungi, soil, decaying wood

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