scholarly journals Application of Metabolomic Analysis in Exploration of Plant Genetic Resources

2019 ◽  
Vol 73 (6) ◽  
pp. 494-501 ◽  
Author(s):  
Igor G. Loskutov ◽  
Tatyana V. Shelenga ◽  
Alexander V. Rodionov ◽  
Valentina I. Khoreva ◽  
Elena V. Blinova ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Resources ◽  
Quality Indicators ◽  
Plant Genetic Resources ◽  
Chemical Compounds ◽  
Cereal Crops ◽  
Metabolomic Analysis ◽  
Biochemical Characteristics ◽  
Abiotic Stressors ◽  
Technological Quality

Abstract The article addresses the issues of using metabolomic analysis to study genetic resources of cereal crops in order to (1) determine phylogenetic linkages between species (the degree of domestication); (2) within species to describe genetic diversity according to its responses to biotic and abiotic stressors and biochemical characteristics (chemical compounds) determining food, feed and technological quality indicators; and (3) select the most resistant and highest-quality geno-types for complex breeding use.

Key issues facing genebanks in preserving crop genetic diversity ex situ: overview of the range of challenges

2021 ◽  
pp. 139-154
Author(s):  
Paula Bramel ◽  
Keyword(s):  
Genetic Diversity ◽  
Genetic Resources ◽  
Plant Genetic Resources ◽  
Cost Effective ◽  
Ex Situ ◽  
Crop Genetic Diversity ◽  
Ex Situ Collections ◽  
Key Issues ◽  
Market Preference ◽  
The Impact

This chapter reviews the key issues and challenges facing genebanks in preserving crop genetic diversity ex situ. Local crop genetic diversity is challenged with changes in land use, urbanization, land degradation, changes in agricultural practises, availability of improved varieties, changes in market preference, and the impact of climate change. Efforts have been made to secure plant genetic resources ex situ for future use but there are significant issues related to cost effective, efficient, secure, rational, and sustainable long-term ex situ conservation. It begins by addressing issues for the composition of ex situ collections and moves on to discuss issues for routine operations for conservation. The chapter also highlights issues for the use of conserved genetic resources, before concluding with a summary of why the development of sustainable genebank systems is so important.

Distribution of genetic diversity in wild European populations of prickly lettuce (Lactuca serriola): implications for plant genetic resources management

2010 ◽  
Vol 8 (2) ◽  
pp. 171-181 ◽  
Author(s):  
C. C. M. van de Wiel ◽  
T. Sretenović Rajičić ◽  
R. van Treuren ◽  
K. J. Dehmer ◽  
C. G. van der Linden ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Genetic Resources ◽  
Plant Genetic Resources ◽  
Crop Wild Relatives ◽  
Population Variation ◽  
Lactuca Serriola ◽  
Genetic Resources Management ◽  
Nbs Profiling ◽  
The Uk

Genetic variation in Lactuca serriola, the closest wild relative of cultivated lettuce, was studied across Europe from the Czech Republic to the United Kingdom, using three molecular marker systems, simple sequence repeat (SSR, microsatellites), AFLP and nucleotide-binding site (NBS) profiling. The ‘functional’ marker system NBS profiling, targeting disease resistance genes of the NBS/LRR family, did not show marked differences in genetic diversity parameters to the other systems. The autogamy of the species resulted in low observed heterozygosity and high population differentiation. Intra-population variation ranged from complete homogeneity to nearly complete heterogeneity. The highest genetic diversity was found in central Europe. The SSR results were compared to SSR variation screened earlier in the lettuce collection of the Centre for Genetic Resources, the Netherlands (CGN). In the UK, practically only a single SSR genotype was found. This genotype together with a few other common SSR genotypes comprised a large part of the plants sampled on the continent. Among the ten most frequent SSR genotypes observed, eight were already present in the CGN collection. Overall, the CGN collection appears to already have a fair representation of genetic variation from NW Europe. The results are discussed in relation to sampling strategies for improving genebank collections of crop wild relatives.

The use of ex situ conserved plant genetic resources

2003 ◽  
Vol 1 (1) ◽  
pp. 19-29 ◽  
Author(s):  
Toby Hodgkin ◽  
V. Ramanatha Rao ◽  
Angélica Cibrian-Jaramillo ◽  
Samy Gaiji
Keyword(s):  
Genetic Diversity ◽  
Genetic Resources ◽  
Agricultural Production ◽  
Production Systems ◽  
Plant Genetic Resources ◽  
Ex Situ ◽  
Recent Information ◽  
Wide Range ◽  
Barriers To Use ◽  
The Many

AbstractPlant genetic resources are conserved so that they can be used to improve crop plant pro- duction and in other ways. However, it is often asserted that use of ex situ conserved germplasm is inadequate and that genetic diversity maintained in genebanks is underutilized. In part, this reflects an incomplete recognition of what constitutes use of plant genetic resources, and of the many different ways in which material from genebanks contributes to improved agricultural production. Based on recent information from surveys of distribution of germplasm from genebanks, and from surveys of users, we suggest that the evidence indicates that there is substantial use of ex situ conserved materials for a wide range of different uses. We suggest that barriers to use of ex situ conserved germplasm may often result from a lack in numbers of users, and from limitations in capacity to effectively utilize the genetic diversity present in genebanks to reduce genetic vulnerability and increase sustainability in modern production systems.

scholarly journals EXPERIENCE IN PRESERVING THE GENETIC DIVERSITY OF STONE FRUITS USING THE BORDER HEDGING TECHNOLOGY

2019 ◽  
Vol 180 (2) ◽  
pp. 7-11
Author(s):  
G. V. Eremin ◽  
T. A. Gasanova ◽  
V. G. Eremin ◽  
I. S. Chepinoga
Keyword(s):  
Genetic Diversity ◽  
Plant Genetic Resources ◽  
Scientific Basis ◽  
Ex Situ ◽  
Morphological Description ◽  
Active Growth ◽  
Space Reduction ◽  
Abiotic Stressors ◽  
Plant Growth Habit

Conservation of the world’s plant genetic resources is one of the most significant and relevant problems of mankind. At Krymsk Experimental Breeding Station of VIR, where the largest stone fruit plant genetic diversity in Russia is assembled (more than 5 thousand genotypes: cultivars and species, wild forms, distant hybrids and polyploids), a collection maintenance technology of ‘border hedging’ has been developed and successfully used. This method makes it quite economical (in terms of space reduction, simplification of the system of care for the storage garden, and decreasing the use of chemical protection agents) to maintain a large number of live accessions ex situ. The border hedging technology is based on a propagule nursery system that enables plants to grow longer than in conventional gardens, constantly keeping them in a state of active growth. The basic elements of this technology are dense arrangement of plants (intervals for high-growing plants: 4.0–5.0 m between rows, and 1.0–1.5 m in a row; for low-growing ones: 2.5 m between rows, and 0.5–1.0 m in a row) and annual pruning of shoots at a height of 1.0–1.2 m. Years of experience in using a denser planting pattern for collection garden maintenance helped to identify a number of most significant factors in this system, which make up the scientific basis of the technology for optimally efficient preservation of genotypes and their genetic compliance (representativeness). Among them are biological features of the in situ plant growth habit, including vigor, selection of rootstock or decision on own-root cultivation, layout of the plot, and maintenance system. If it is necessary to study the accessions in the garden where they are preserved in order to make their initial evaluation (approbation, morphological description, study of crop structure, biochemical or biotechnological assessment, analysis of resistance to biotic and abiotic stressors), the plants should not be pruned for 1–2 years. Upon completion of these works, the trees are coppiced again.

Exploring the Genetic Diversity of Some Squash (Cucurbita Maxima L.) Germplasm Using Morphological and Molecular Markers in Erzincan

2021 ◽  
Author(s):  
HALIL IBRAHIM OZTURK ◽  
Veysel Dönderalp ◽  
Hüseyin Bulut ◽  
Recep Korkut ◽  
Arash HOSSEINPOUR ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Resources ◽  
Ssr Markers ◽  
Molecular Level ◽  
Polymorphic Information Content ◽  
Plant Genetic Resources ◽  
Molecular Characteristics ◽  
Cucurbita Maxima ◽  
High Genetic Diversity ◽  
The Mean

Abstract Background Plant genetic resources constitute the most valuable assets of countries. It is of great importance to determine the genetic variation among these resources and to use the data in breeding studies. Cucurbita maxima species in the cucurbitaceae family have high genetic diversity, but its genetic diversity at the molecular level is inadequately characterized. Methods and Results To determine the genetic diversity among genotypes of Cucurbita maxima species of squash, which is widely grown in Erzincan, 14 different squash genotypes collected were examined based on the morphological parameters and molecular characteristics. SSR (Simple sequence repeat) markers were used to determine genetic diversity at the molecular level. The analysis of morphological characterization within genotypes showed a wide variability in morphological traits of plant, flower, fruit, and leaf. Seven SSR markers yielded a total of 23 polymorphic bands, the number of alleles per marker ranged from 2 to 5, and the mean number of alleles was 3.286. Polymorphic information content (PIC) ranged from 0.00 (GMT-M61) to 0.202 (GMT-P25), and the mean PIC value per marker was 0.130. Cluster analysis using Nei's genetic distance determined that 14 genotypes were divided into 3 major groups. Conclusions The SSR markers used were effective in distinguish among similar winter squash or pumpkin and therefore can be beneficial for consideration of Cucurbita maxima species diversity, screening of genetic resources and their selection.

Monitoring plant genetic resources for food and agriculture

2021 ◽  
pp. 55-80
Author(s):  
M. Ehsan Dulloo ◽  
◽  
Prishnee Bissessur ◽  
Jai Rana ◽  
◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Sustainable Development ◽  
Genetic Resources ◽  
Plant Genetic Resources ◽  
Sustainable Use ◽  
Global Level ◽  
Food And Agriculture ◽  
Monitoring Strategies ◽  
Genetic Level ◽  
Development Goals

This chapter reviews the methodologies developed to assess the extent of diversity of PGRFA at species, variety, and genetic level and examines the efforts made at global level in monitoring them at different scales. Efforts have been made to halt the loss of biodiversity (including genetic diversity) by United Nations Organizations (FAO, UNEP, UN) at setting of global targets (second Global Plan of Action on conservation and sustainable use of PGRFA, Aichi Targets and Sustainable Development Goals) and indicators have been established to monitor progress towards them. Yet none of the targets on genetic diversity have been achieved, due to a lack of implementable monitoring system that would allow progress to be accurately monitored. Further research is needed to improve the methodologies for monitoring plant genetic resources, particularly at the varietal and genetic level. The chapter discusses the opportunities and challenges as well as provides recommendations for future conservation and monitoring strategies that may safeguard PGRFA for posterity.

scholarly journals Genetic Diversity of Puerto Rican Farmer-held Papaya (Carica papaya) Using SSR Markers

HortScience ◽  
2018 ◽  
Vol 53 (8) ◽  
pp. 1109-1114 ◽  
Author(s):  
Dianiris Luciano-Rosario ◽  
Luis A. Cruz-Saavedra ◽  
Dimuth Siritunga
Keyword(s):  
Genetic Diversity ◽  
Puerto Rico ◽  
Genetic Resources ◽  
Puerto Rican ◽  
Ssr Markers ◽  
Carica Papaya ◽  
Plant Genetic Resources ◽  
Group Method ◽  
Department Of Agriculture ◽  
Pair Group

Native to Central America, papaya (Carica papaya) is one of the most cultivated fruit crops in the tropical areas of the world. Genetic diversity analyses are an important aspect of conservation of plant genetic resources. In the island of Puerto Rico, where papaya has been consumed for centuries, knowledge on the genetic diversity of papaya is lacking. Therefore, 162 papaya accessions were evaluated using 23 simple sequence repeat (SSR) markers. Of these accessions, 139 were farmer-held samples from Puerto Rico, 13 were U.S. Department of Agriculture (USDA) repository samples, and 10 were commercial varieties. A total of 214 alleles were identified with a mean observed heterozygosity (Ho) of 0.219. Inbreeding coefficient (F) was 0.565, and when evaluating the population structure of these accessions, 2 groups (k = 2) were identified. Unweighted pair group method with arithmetic mean (UPGMA) dendrogram showed no geographical organization within the unknown Puerto Rican samples. This assessment provides an extensive record of the genetic diversity of papaya in Puerto Rico which can contribute to breeding strategies and to the conservation of papaya genetic resources in the Caribbean.

scholarly journals Introducing Beneficial Alleles from Plant Genetic Resources into the Wheat Germplasm

Biology ◽  
2021 ◽  
Vol 10 (10) ◽  
pp. 982
Author(s):  
Shivali Sharma ◽  
Albert Schulthess ◽  
Filippo Bassi ◽  
Ekaterina Badaeva ◽  
Kerstin Neumann ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Resources ◽  
Plant Genetic Resources ◽  
Wheat Breeding ◽  
Breeding Programs ◽  
Selection Processes ◽  
Starting Point ◽  
The Status ◽  
Modern Wheat ◽  
Elite Germplasm

Wheat (Triticum sp.) is one of the world’s most important crops, and constantly increasing its productivity is crucial to the livelihoods of millions of people. However, more than a century of intensive breeding and selection processes have eroded genetic diversity in the elite genepool, making new genetic gains difficult. Therefore, the need to introduce novel genetic diversity into modern wheat has become increasingly important. This review provides an overview of the plant genetic resources (PGR) available for wheat. We describe the most important taxonomic and phylogenetic relationships of these PGR to guide their use in wheat breeding. In addition, we present the status of the use of some of these resources in wheat breeding programs. We propose several introgression schemes that allow the transfer of qualitative and quantitative alleles from PGR into elite germplasm. With this in mind, we propose the use of a stage-gate approach to align the pre-breeding with main breeding programs to meet the needs of breeders, farmers, and end-users. Overall, this review provides a clear starting point to guide the introgression of useful alleles over the next decade.

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