Dynamic Microbiome Changes Reveal the Effect of 1-Methylcyclopropene Treatment on Reducing Post-harvest Fruit Decay in “Doyenne du Comice” Pear

Pathogen-induced decay is one of the most common causes of fruit loss, resulting in substantial economic loss and posing a health risk to humans. As an ethylene action inhibitor, 1-methylcyclopropene (1-MCP) can significantly reduce fruit decay, but its effect on fruit pathogens remains unclear. Herein, the change in microbial community structure was analyzed using the high-throughput sequencing technology, and characteristics related to fruit quality were determined after 1-MCP (1.0 M l L–1) treatment in “Doyenne du Comiceis” pear fruit during storage at ambient temperature. Overall, 1-MCP was highly effective in reducing disease incidence and induced multiple changes of the fungal and bacterial microbiota. At day 15, the microbial diversity of fungi or bacteria was reduced significantly in the control fruit (non-treated with 1-MCP), which had the most severe decay incidence. For fungi, in addition to Alternaria being the most abundant in both 1-MCP treatment (59.89%) and control (40.18%), the abundances of Botryosphaeria (16.75%), Penicillium (8.81%), and Fusarium (6.47%) increased significantly with the extension of storage time. They became the primary pathogens to cause fruit decay in control, but they were markedly decreased in 1-MCP treatment, resulting in reduced disease incidence. For bacteria, the abundance of Gluconobacter (50.89%) increased dramatically at day 15 in the control fruit, showing that it also played a crucial role in fruit decay. In addition, Botryosphaeria, Fusarium fungi, and Massilia, Kineococcus bacteria were identified as biomarkers to distinguish 1-MCP treatment and control using Random Forest analysis. The redundancy analysis (RDA) result showed that the amount of Botryosphaeria, Penicillium, and Fusarium were positively correlated with disease incidence and respiration rate of pear fruits while negatively correlated with fruit firmness. This investigation is the first comprehensive analysis of the microbiome response to 1-MCP treatment in post-harvest pear fruit, and reveals the relationship between fruit decay and microbial composition in pear fruit.

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Comparative Analysis of the Fecal Bacterial Microbiota of Wintering Whooper Swans (Cygnus Cygnus)

Frontiers in Veterinary Science ◽

10.3389/fvets.2021.670645 ◽

2021 ◽

Vol 8 ◽

Author(s):

Wenxia Wang ◽

Songlin Huang ◽

Liangliang Yang ◽

Guogang Zhang

Keyword(s):

Intestinal Microbiota ◽

Relative Abundance ◽

High Throughput Sequencing ◽

The Body ◽

16S Rrna Genes ◽

Rrna Genes ◽

Illumina Hiseq ◽

Linear Discriminant ◽

Bacterial Microbiota ◽

And Control

There are many and diverse intestinal microbiota, and they are closely related to various physiological functions of the body. They directly participate in the host's food digestion, nutrient absorption, energy metabolism, immune response, and many other physiological activities and are also related to the occurrence of many diseases. The intestinal microbiota are extremely important for maintaining normal physical health. In order to explore the composition and differences of the intestinal microbiota of whooper swans in different wintering areas, we collected fecal samples of whooper swans in Sanmenxia, Henan, and Rongcheng, Shandong, and we used the Illumina HiSeq platform to perform high-throughput sequencing of bacterial 16S rRNA genes. Comparison between Sanmenxia and Rongcheng showed no significant differences in ACE, Chao 1, Simpson, and Shannon indices (p > 0.05). Beta diversity results showed significant differences in bacterial communities between two groups [analysis of similarity (ANOSIM): R = 0.80, p = 0.011]. Linear discriminant analysis effect size (LEfSe) analysis showed that at the phylum level, the relative abundance of Actinobacteria was significantly higher in Sanmenxia whooper swans than Rongcheng whooper swans. At the genus level, the amount of Psychrobacter and Carnobacterium in Sanmenxia was significantly higher in Rongcheng, while the relative abundance Catellicoccus and Lactobacillus was significantly higher in Rongcheng than in Sanmenxia. This study analyzed the composition, characteristics, and differences of the intestinal microbiota of the whooper swans in different wintering environments and provided theoretical support for further exploring the relationship between the intestinal microbiota of the whooper swans and the external environment. And it played an important role in the overwintering physiology and ecology, population management, and epidemic prevention and control of whooper swans.

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Characterization of bacterial community of rumen from bovine during laminitis challenge by high-throughput sequencing

10.21203/rs.3.rs-31535/v1 ◽

2020 ◽

Author(s):

Jian Guo ◽

Haowen Sun ◽

T. Maimai ◽

Caijun Zhao ◽

Yongguo Cao ◽

...

Keyword(s):

Lactic Acid ◽

Bacterial Community ◽

High Throughput Sequencing ◽

Economic Loss ◽

Ruminal Bacteria ◽

Classic Problem ◽

Bacterial Microbiota ◽

Clostridium Papyrosolvens ◽

Acid Metabolites

Abstract Background: Laminitis is a classic problem in the dairy industry, which can cause a great economic loss. However, the etiology and pathogenesis of laminitis have yet to be understood. In recent years, the microbiota has been the focus of much investigation in the search for various diseases. The present study aimed to explore the relationship between ruminal bacterial microbiota and laminitis. Results: The serum of healthy and laminitis bovines (n=8, respectively) collected from farms was used to detect concentrations of LPS, lactic acid, and histamine by the detection kits. This study used 16S rRNA sequencing to identify the differences in the bacterial community. The results showed that there was a significant increase in LPS and lactic acid in the laminitis group. Furthermore, microbial data analysis revealed that the laminitis group increased the abundance of bacteria with acid metabolites, such as Candidatus Saccharimonas, Saccharofermentans, Erysipelotrichaceae UCG-009, and Erysipelotrichaceae UCG-008, and [Clostridium] papyrosolvens and Ruminococcaceae bacterium AE2021.Conclusions: In summary, the changes in ruminal bacteria may potentially serve as the risk of laminitis.

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Mango Endophyte and Epiphyte Microbiome Composition during Fruit Development and Post-Harvest Stages

Horticulturae ◽

10.3390/horticulturae7110495 ◽

2021 ◽

Vol 7 (11) ◽

pp. 495

Author(s):

Malick Bill ◽

Lizyben Chidamba ◽

Jarishma Keriuscia Gokul ◽

Lise Korsten

Keyword(s):

Fruit Development ◽

Management Strategies ◽

Development Stage ◽

Microbial Composition ◽

Microbiome Composition ◽

Bacterial Phyla ◽

Post Harvest ◽

Bacterial Microbiota ◽

Target Effect ◽

Generation Sequencing

The influence of the development stage and post-harvest handling on the microbial composition of mango fruit plays a central role in fruit health. Hence, the composition of fungal and bacterial microbiota on the anthoplane, fructoplane, stems and stem-end pulp of mango during fruit development and post-harvest handling were determined using next-generation sequencing of the internal transcribed spacer and 16S rRNA regions. At full bloom, the inflorescence had the richest fungal and bacterial communities. The young developing fruit exhibited lower fungal richness and diversities in comparison to the intermediate and fully developed fruit stages on the fructoplane. At the post-harvest stage, lower fungal and bacterial diversities were observed following prochloraz treatment both on the fructoplane and stem-end pulp. Ascomycota (52.8%) and Basidiomycota (43.2%) were the most dominant fungal phyla, while Penicillium, Botryosphaeria, Alternaria and Mucor were detected as the known post-harvest decay-causing fungal genera. The Cyanobacteria (35.6%), Firmicutes (26.1%) and Proteobacteria (23.1%) were the most dominant bacterial phyla. Changes in the presence of Bacillus subtilis following post-harvest interventions such as prochloraz suggested a non-target effect of the fungicide. The present study, therefore, provides the primary baseline data on mango fungal and bacterial diversity and composition, which can be foundational in the development of effective disease (stem-end rot) management strategies.

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Disease Incidence—Inoculum Dose Relationships for Botrytis cinerea and Penicillium expansum and Decay of Pear Fruit Using Dry, Airborne Conidia

Plant Disease ◽

10.1094/pdis.2001.85.7.755 ◽

2001 ◽

Vol 85 (7) ◽

pp. 755-759 ◽

Cited By ~ 16

Author(s):

Robert A. Spotts ◽

Louis A. Cervantes

Keyword(s):

Botrytis Cinerea ◽

Disease Incidence ◽

Gray Mold ◽

Fruit Rot ◽

Penicillium Expansum ◽

Pear Fruit ◽

Blue Mold ◽

Inoculum Dose ◽

Airborne Concentration ◽

Fruit Decay

The objective of this research was to determine quantitative relationships between incidence of pear fruit decay and inoculum dose of Botrytis cinerea and Penicillium expansum using dry conidia applied to wet or dry pears in a settling tower. On wet fruit, incidence of gray mold fruit rot increased from 0.1 to 83.1% as the airborne concentration of B. cinerea conidia increased from 0 to 8.6 spores per liter of air. Significantly less decay occurred in fruit inoculated dry compared to wet, particularly in fruit wounded after inoculation. Incidence of blue mold increased from 1 to 100% as the airborne concentration of P. expansum conidia increased from 0.1 to 803.5 spores per liter of air. Blue mold incidence was not affected by fruit wetness or time of wounding relative to inoculation. All regressions of decay incidence versus airborne and surface conidial concentrations were highly significant (P = 0.01).

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4th IFAC Conference on Modelling and Control in Agriculture, Horticulture and Post Harvest Industry, 2013

10.3182/20130828-2-sf-3019 ◽

2013 ◽

Keyword(s):

Post Harvest ◽

And Control

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The Fecal Bacterial Microbiota in Horses with Equine Recurrent Uveitis

Animals ◽

10.3390/ani11030745 ◽

2021 ◽

Vol 11 (3) ◽

pp. 745

Author(s):

Michelle Martin de Bustamante ◽

Diego Gomez ◽

Jennifer MacNicol ◽

Ralph Hamor ◽

Caryn Plummer

Keyword(s):

Beta Diversity ◽

High Throughput Sequencing ◽

Illumina Miseq ◽

Diversity Indices ◽

Rrna Gene ◽

Linear Discriminant ◽

Alpha And Beta Diversity ◽

Bacterial Microbiota ◽

Healthy Control ◽

Equine Recurrent Uveitis

The objective of this study was to describe and compare the fecal bacterial microbiota of horses with equine recurrent uveitis (ERU) and healthy horses using next-generation sequencing techniques. Fecal samples were collected from 15 client-owned horses previously diagnosed with ERU on complete ophthalmic examination. For each fecal sample obtained from a horse with ERU, a sample was collected from an environmentally matched healthy control with no evidence of ocular disease. The Illumina MiSeq sequencer was used for high-throughput sequencing of the V4 region of the 16S rRNA gene. The relative abundance of predominant taxa, and alpha and beta diversity indices were calculated and compared between groups. The phyla Firmicutes, Bacteroidetes, Verrucomicrobia, and Proteobacteria predominated in both ERU and control horses, accounting for greater than 60% of sequences. Based on linear discriminant analysis effect size (LEfSe), no taxa were found to be enriched in either group. No significant differences were observed in alpha and beta diversity indices between groups (p > 0.05 for all tests). Equine recurrent uveitis is not associated with alteration of the gastrointestinal bacterial microbiota when compared with healthy controls.

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Disentangling Responses of the Subsurface Microbiome to Wetland Status and Implications for Indicating Ecosystem Functions

Microorganisms ◽

10.3390/microorganisms9020211 ◽

2021 ◽

Vol 9 (2) ◽

pp. 211

Author(s):

Jie Gao ◽

Miao Liu ◽

Sixue Shi ◽

Ying Liu ◽

Yu Duan ◽

...

Keyword(s):

Microbial Community ◽

High Throughput Sequencing ◽

Carbon Fixation ◽

Microbial Community Composition ◽

Ecosystem Functions ◽

Microbial Composition ◽

Wetland Ecosystems ◽

Soil Microbial ◽

Geochemical Properties ◽

Microbial Groups

In this study, we analyzed microbial community composition and the functional capacities of degraded sites and restored/natural sites in two typical wetlands of Northeast China—the Phragmites marsh and the Carex marsh, respectively. The degradation of these wetlands, caused by grazing or land drainage for irrigation, alters microbial community components and functional structures, in addition to changing the aboveground vegetation and soil geochemical properties. Bacterial and fungal diversity at the degraded sites were significantly lower than those at restored/natural sites, indicating that soil microbial groups were sensitive to disturbances in wetland ecosystems. Further, a combined analysis using high-throughput sequencing and GeoChip arrays showed that the abundance of carbon fixation and degradation, and ~95% genes involved in nitrogen cycling were increased in abundance at grazed Phragmites sites, likely due to the stimulating impact of urine and dung deposition. In contrast, the abundance of genes involved in methane cycling was significantly increased in restored wetlands. Particularly, we found that microbial composition and activity gradually shifts according to the hierarchical marsh sites. Altogether, this study demonstrated that microbial communities as a whole could respond to wetland changes and revealed the functional potential of microbes in regulating biogeochemical cycles.

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Experimental infection with the hookworm, Necator americanus, is associated with stable gut microbial diversity in human volunteers with relapsing multiple sclerosis

BMC Biology ◽

10.1186/s12915-021-01003-6 ◽

2021 ◽

Vol 19 (1) ◽

Author(s):

Timothy P. Jenkins ◽

David I. Pritchard ◽

Radu Tanasescu ◽

Gary Telford ◽

Marina Papaiakovou ◽

...

Keyword(s):

Multiple Sclerosis ◽

Experimental Infection ◽

High Throughput Sequencing ◽

Alpha Diversity ◽

Placebo Treatment ◽

Sequencing Data ◽

Faecal Microbiota ◽

Microbial Composition ◽

Necator Americanus ◽

Human Volunteers

Abstract Background Helminth-associated changes in gut microbiota composition have been hypothesised to contribute to the immune-suppressive properties of parasitic worms. Multiple sclerosis is an immune-mediated autoimmune disease of the central nervous system whose pathophysiology has been linked to imbalances in gut microbial communities. Results In the present study, we investigated, for the first time, qualitative and quantitative changes in the faecal bacterial composition of human volunteers with remitting multiple sclerosis (RMS) prior to and following experimental infection with the human hookworm, Necator americanus (N+), and following anthelmintic treatment, and compared the findings with data obtained from a cohort of RMS patients subjected to placebo treatment (PBO). Bacterial 16S rRNA high-throughput sequencing data revealed significantly decreased alpha diversity in the faecal microbiota of PBO compared to N+ subjects over the course of the trial; additionally, we observed significant differences in the abundances of several bacterial taxa with putative immune-modulatory functions between study cohorts. Parabacteroides were significantly expanded in the faecal microbiota of N+ individuals for which no clinical and/or radiological relapses were recorded at the end of the trial. Conclusions Overall, our data lend support to the hypothesis of a contributory role of parasite-associated alterations in gut microbial composition to the immune-modulatory properties of hookworm parasites.

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Plant MicroRNAs Responsive to Fungal Infection

Advanced Materials Research ◽

10.4028/www.scientific.net/amr.941-944.1141 ◽

2014 ◽

Vol 941-944 ◽

pp. 1141-1145 ◽

Cited By ~ 1

Author(s):

Hui Li Zhang ◽

Lin Chen ◽

Wen Na Li ◽

Li Li Wang ◽

Hong Yu Xie

Keyword(s):

Fungal Pathogens ◽

High Throughput Sequencing ◽

Adaptive Immune System ◽

Messenger Rnas ◽

Disease Mechanism ◽

Adaptive Immune ◽

Alternative Approach ◽

Crop Disease ◽

Transcriptional Gene Regulation ◽

And Control

MicroRNAs (miRNAs) are endogenous small RNAs transcribed from non-coding DNA, which have the capacity to base pair with the target mRNAs (messenger RNAs) to repress their translation or resulted in cleavage. We have paid much attention on the DNA and its coded proteins, the discovery of miRNAs as gene negatively regulators has led to a fundamental change in understanding of post-transcriptional gene regulation in plants. Fungal pathogens infection is the main cause of most economic crops diseases. Unlike humans, plants don’t evolved to have a adaptive immune system, they protect themselves with a mechanism consists of activation and response. Recently, high throughput sequencing validated that miRNA play a crucial role in plant-fungus interaction. A better understanding of miRNA-mediated disease mechanism in fungi should clarify the strategy of crop disease control. MiRNA-based manipulations as gene suppressors, such as artificial miRNAs, may emerge as a new alternative approach for the improvement of crops and control of crop disease.

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Analysis of Critical Control Points of Post-Harvest Diseases in the Material Flow of Nam Dok Mai Mango Exported to Japan

Agriculture ◽

10.3390/agriculture9090200 ◽

2019 ◽

Vol 9 (9) ◽

pp. 200

Author(s):

Matulaprungsan ◽

Wongs-Aree ◽

Penchaiya ◽

Boonyaritthongchai ◽

Srisurapanon ◽

...

Keyword(s):

Material Flow ◽

Hot Water ◽

Control Points ◽

Ripe Fruit ◽

Post Harvest ◽

Critical Control Points ◽

Cultivar Selection ◽

Fruit Decay ◽

Processing Line ◽

Field Production

‘Nam Dok Mai’ mango is a luxury commercial fruit in Thailand, but post-harvest diseases infecting the ripe fruit is a major problem affecting marketability. The objective of the present study was to map the supply chain of ‘Nam Dok Mai’ mangoes exported to Japan and analyze the critical points of post-harvest disease infection caused mainly by Colletotrichum gloeosporioides. Risk points of the post-harvest diseases were found by examining the material and information flows from processes ranging from field production to post-harvest handling, and these were obtained from mango growers and an exporter. The findings of interviews with mango growers and observations of the mangoes in field production were that the first point of risk was cultivar selection, while branch pruning and fruit bagging were further important processes causing post-harvest fruit decay. On the other hand, it was found that post-harvest handling was significant in decreasing anthracnose disease infection; this was seen at the step of dipping the fruit in 50 °C hot water for 3 min at the processing line.

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