scholarly journals Biosystematic Study on Some Egyptian Species of Astragalus L. (Fabaceae)

Agriculture ◽  
2021 ◽  
Vol 11 (2) ◽  
pp. 125
Author(s):  
Monier M. Abd El-Ghani ◽  
Ashraf S. A. El-Sayed ◽  
Ahmed Moubarak ◽  
Rabab Rashad ◽  
Hala Nosier ◽  
...  
Keyword(s):  
Genetic Relationships ◽  
Dna Barcode ◽  
Plant Morphology ◽  
Its Region ◽  
Its2 Region ◽  
Whole Plant ◽  
Three Samples ◽  
Two Samples ◽  
Region 10 ◽  
Unique Banding Pattern

Astragalus L. is one of the largest angiosperm complex genera that belongs to the family Fabaceae, subfamily Papilionoideae or Faboideae under the subtribe Astragalinae of the tribe Galegeae. The current study includes the whole plant morphology, DNA barcode (ITS2), and molecular marker (SCoT). Ten taxa representing four species of Astragalus were collected from different localities in Egypt during the period from February 2018 to May 2019. Morphologically, identification and classification of collected Astragalus plants occurred by utilizing the light microscope, regarding the taxonomic revisions of the reference collected Astragalus specimens in other Egyptian Herbaria. For molecular validation, ten SCoT primers were used in this study, producing a unique banding pattern to differentiate between ten samples of Astragalus taxa which generated 212 DNA fragments with an average of 12.2 bands per 10 Astragalus samples, with 8 to 37 fragments per primer. The 212 fragments amplified were distributed as 2 monomorphic bands, 27 polymorphic without unique bands, 183 unique bands (210 Polymorphic with unique bands), and ITS2 gene sequence was showed as the optimal barcode for identifying Astragalus L. using BLAST searched on NCBI database, and afterward, analyzing the chromatogram for ITS region, 10 samples have been identified as two samples representing A. hauarensis, four samples representing A. sieberi, three samples representing A. spinosus and one sample representing A. vogelii. Based on the ITS barcode, A. hauarensis RMG1, A. hauarensis RMG2, A. sieberi RMG1, A. sieberi RMG2, A. sieberi RMG3, A. sieberi RMG4, A. spinosus RMG1, A. spinosus RMG2, A. spinosus RMG3, A. vogelii RMG were deposited into GenBank with accession # MT367587.1, MT367591.1, MT367593.1, MT367585.1, MT367586.1, MT367588.1, MT160347.1, MT367590.1, MT367589.1, MT367592.1, respectively. These results indicated the efficiency of SCoT markers and ITS2 region in identifying and determining genetic relationships between Astragalus species.

scholarly journals Identification of Genetic Relationship of Local Rice in East Java Based on gene matK

el–Hayah ◽  
2019 ◽  
Vol 6 (4) ◽  
pp. 136-143
Author(s):  
Kurniawan Setia Putra ◽  
Dwi Listyorini ◽  
Suharti Suharti
Keyword(s):  
Genetic Relationships ◽  
Molecular Genetic ◽  
Dna Barcode ◽  
Genetic Erosion ◽  
Oryza Rufipogon ◽  
Phylogenetic Position ◽  
Phylogenetic Tree Analysis ◽  
Living Things ◽  
Three Samples ◽  
New Varieties

Genetic diversity in living things is very important in the fulfillment of germplasm and conservation activities. East Java local rice is not so much cultivated farmers, so that the existence of local rice has begun to be replaced with new varieties and it is feared will happen genetic erosion of local rice. The purpose of this study to identify the genetic relationships of local rice and phylogenetic position of the rice contained in the Gene Bank. The method used to identify a molecular genetic using short pieces of DNA called DNA barcode. The results of this study indicate that the three local varieties of Berlian (Br), Genjah Harum (Gh) and Jawa (Jw) varieties can be identified by the matK gene barcode. The results of electrophoresis visualization showed that the DNA bands of the three samples were 900 bp. The results of DNA BLAST analysis show that the genetic relationships level with Oryza sativa and Oryza rufipogon is 100%. The results of the phylogenetic tree analysis showed that East Java's local rice was in one taxa with other rice and had a confidence level above 50

scholarly journals A Comparison of the Composition of Selected Commercial Sandalwood Oils with the International Standard

Molecules ◽  
2021 ◽  
Vol 26 (8) ◽  
pp. 2249
Author(s):  
Malgorzata Kucharska ◽  
Barbara Frydrych ◽  
Wiktor Wesolowski ◽  
Jadwiga A. Szymanska ◽  
Anna Kilanowicz
Keyword(s):  
Mass Spectrometry Analysis ◽  
Santalum Album ◽  
Benzyl Benzoate ◽  
Spectrometry Analysis ◽  
Correct Information ◽  
Three Samples ◽  
Two Samples ◽  
High Street ◽  
Chromatographic Profile ◽  
Sandalwood Oil

Sandalwood oils are highly desired but expensive, and hence many counterfeit oils are sold in high street shops. The study aimed to determine the content of oils sold under the name sandalwood oil and then compare their chromatographic profile and α- and β santalol content with the requirements of ISO 3518:2002. Gas chromatography with mass spectrometry analysis found that none of the six tested “sandalwood” oils met the ISO standard, especially in terms of α-santalol content. Only one sample was found to contain both α- and β-santalol, characteristic of Santalum album. In three samples, valerianol, elemol, eudesmol isomers, and caryophyllene dominated, indicating the presence of Amyris balsamifera oil. Another two oil samples were found to be synthetic mixtures: benzyl benzoate predominating in one, and synthetic alcohols, such as javanol, polysantol and ebanol, in the other. The product label only gave correct information in three cases: one sample containing Santalum album oil and two samples containing Amyris balsamifera oil. The synthetic samples described as 100% natural essential oil from sandalwood are particularly dangerous and misleading to the consumer. Moreover, the toxicological properties of javanol, polysantol and ebanol, for example, are unknown.

scholarly journals Identification of medicinal plant Schisandra chinensis using a potential DNA barcode ITS2

2013 ◽  
Vol 82 (4) ◽  
pp. 283-288 ◽  
Author(s):  
Xian-kuan Li ◽  
Bing Wang ◽  
Rong-chun Han ◽  
Yan-chao Zheng ◽  
Hai-bo Yin Yin ◽  
...  
Keyword(s):  
Dna Barcode ◽  
Population Level ◽  
Species Level ◽  
Its2 Region ◽  
Schisandra Chinensis ◽  
Success Rates ◽  
Wild Populations ◽  
Efficient Tool ◽  
Different Populations ◽  
Cultivated Populations

To test whether the internal transcribed spacer 2 (ITS2) region is an effective marker for using in authenticating of the <em>Schisandra chinensis</em> at the species and population levels, separately. And the results showed that the wild populations had higher percentage of individuals that had substitution of C→A at site 86-bp than the cultivated populations. At sites 10-bp, 37-bp, 42-bp and 235-bp, these bases of the <em>Schisandra sphenanthera</em> samples differed from that of <em>S. chinensis</em>. Two species showed higher levels of inter-specific divergence than intra-specific divergence within ITS2 sequences. However, 24 populations did not demonstrate much difference as inter-specific and intra-specific divergences were concerned. Both <em>S. chinensis</em> and <em>S. sphenanthera</em> showed monophyly at species level, yet the samples of different populations shown polyphyly at population level. ITS2 performed well when using BLAST1 method. ITS2 obtained 100% identification success rates at the species level for <em>S. chinensis</em>, with no ambiguous identification at the genus level for ITS2 alone. The ITS2 region could be used to identify <em>S. chinensis</em> and <em>S. sphenanthera</em> in the “Chinese Pharmacopoeia”. And it could also correctly distinguish 100% of species and 100% of genera from the 193 sequences of <em>S. chinensis</em>. Hence, the ITS2 is a powerful and efficient tool for species identification of <em>S. chinensis</em>.

Magnetic study of Fe3O4/Ag nanoparticles

2018 ◽  
Vol 83 (1) ◽  
pp. 10402
Author(s):  
Janusz Typek ◽  
Nikos Guskos ◽  
Grzegorz Zolnierkiewicz ◽  
Zofia Lendzion-Bielun ◽  
Anna Pachla ◽  
...  
Keyword(s):  
Antibacterial Properties ◽  
Blocking Temperature ◽  
Precipitation Method ◽  
Magnetic Clusters ◽  
Mass Ratio ◽  
Three Samples ◽  
Two Samples ◽  
Magnetic Resonance Technique ◽  
Silver Nps ◽  
Multi Mode

Nanocomposites of Fe3O4 nanoparticles (NPs) impregnated with silver NPs display antibacterial properties and may be used in water treatment as disinfection agent. Three samples were synthesized: Fe3O4 NPs obtained by the precipitation method and additionally two samples with added silver NPs with mass ratio of Ag:Fe3O4 equal to 1:100 and 2:100. Magnetic properties of these samples were studied by SQUID magnetometry (in temperature range 2–300 K and magnetic fields up to 70 kG) and magnetic resonance technique at RT. Temperature dependence of dc susceptibility revealed the blocking temperature close to RT in all three samples and allowed to determine the presence of single or multi-mode distribution of NP sizes in a particular sample. Isothermal magnetisation measurements showed that the presence of silver NPs, especially those with smaller sizes, decreases the saturation magnetisation. The shape of ferromagnetic loop registered at T = 2 K was used to discuss the sizes of NP magnetic clusters in our samples. Conclusions obtained from analysis of the ferromagnetic resonance spectra were consistent with the propositions based on the magnetometric studies.

Genetic relationships among Brazilian strains of Aspergillus ochraceus based on RAPD and ITS sequences

2004 ◽  
Vol 50 (11) ◽  
pp. 985-988 ◽  
Author(s):  
Maria Helena Pelegrinelli Fungaro ◽  
Marciane Magnani ◽  
Laurival Antônio Vilas-Boas ◽  
Patrícia Cristina Vissotto ◽  
Márcia Cristina Furlaneto ◽  
...  
Keyword(s):  
Ochratoxin A ◽  
Sequence Data ◽  
Genetic Relationships ◽  
Its Region ◽  
Aspergillus Ochraceus ◽  
Coffee Bean ◽  
Coffee Beans ◽  
Major Species ◽  
Group A ◽  
Group B

Ochratoxin A (OA) is a mycotoxin that has been found in coffee beans and coffee beverages. Its toxicological profile includes carcinogenicity, nephrotoxicity, and immunotoxicity. Aspergillus ochraceus is the major species responsible for OA production in Brazilian coffee beans. The genetic relationships among 25 A. ochraceus strains collected from Brazilian coffee-bean samples were determined based on RAPD and internal transcribed spacer (ITS) sequence data. The isolates were resolved into 2 distinct groups, one with 4 strains (group A) and the other with 21 strains (group B). Specific nucleotide variations characterizing group A and B were found for both ITS1 and ITS2 regions. Group B is a new group proposed here to accommodate the majority of the Brazilian isolates. Each group was found to contain both toxigenic and nontoxigenic strains, indicating that there is no association between molecular genotypes and the ability to produce OA.Key words: Aspergillus ochraceus, ochratoxin A, ITS region (ITS1–5.8S–ITS2), RAPD.

scholarly journals Rapid Identification and Verification of Indirubin-Containing Medicinal Plants

2015 ◽  
Vol 2015 ◽  
pp. 1-9 ◽  
Author(s):  
Zhigang Hu ◽  
Yuan Tu ◽  
Ye Xia ◽  
Peipei Cheng ◽  
Wei Sun ◽  
...  
Keyword(s):  
Medicinal Plants ◽  
High Performance ◽  
Dna Barcode ◽  
Rapid Identification ◽  
Genetic Distances ◽  
Its2 Region ◽  
Myelocytic Leukemia ◽  
Natural Treatment ◽  
Polygonum Tinctorium ◽  
Close Relatives

Indirubin, one of the key components of medicinal plants includingIsatis tinctoria, Polygonum tinctorium, andStrobilanthes cusia, possesses great medicinal efficacy in the treatment of chronic myelocytic leukemia (CML). Due to misidentification and similar name, materials containing indirubin and their close relatives frequently fall prey to adulteration. In this study, we selected an internal transcribed spacer 2 (ITS2) for distinguishing these indirubin-containing species from five of their usual adulterants, after assessing identification efficiency ofmatK, rbcL, psbA-trnH, and ITS2 among these species. The results of genetic distances and neighbor-joining (NJ) phylogenetic tree indicated that ITS2 region is a powerful DNA barcode to accurately identify these indirubin-containing species and discriminate them from their adulterants. Additionally, high performance liquid chromatography (HPLC) was used to verify indirubin in different organs of the above species. The results showed that indirubin had been detected in the leaves ofIs. tinctoria, P. tinctorium, S. cusia, and Indigo Naturalis (made from their mixture), but not in their roots, or in the leaves of their adulterants. Therefore, this study provides a novel and rapid method to identify and verify indirubin-containing medicinal plants for effective natural treatment of CML.

scholarly journals Database establishment for the secondary fungal DNA barcodetranslational elongation factor 1α(TEF1α)

Genome ◽  
2019 ◽  
Vol 62 (3) ◽  
pp. 160-169 ◽  
Author(s):  
Wieland Meyer ◽  
Laszlo Irinyi ◽  
Minh Thuy Vi Hoang ◽  
Vincent Robert ◽  
Dea Garcia-Hermoso ◽  
...  
Keyword(s):  
Dna Sequences ◽  
Fungal Infections ◽  
Dna Barcode ◽  
Elongation Factor ◽  
Its Region ◽  
Reference Sequence ◽  
Diagnostic Tools ◽  
Reference Database ◽  
Elongation Factor 1Α ◽  
Fungal Dna

With new or emerging fungal infections, human and animal fungal pathogens are a growing threat worldwide. Current diagnostic tools are slow, non-specific at the species and subspecies levels, and require specific morphological expertise to accurately identify pathogens from pure cultures. DNA barcodes are easily amplified, universal, short species-specific DNA sequences, which enable rapid identification by comparison with a well-curated reference sequence collection. The primary fungal DNA barcode, ITS region, was introduced in 2012 and is now routinely used in diagnostic laboratories. However, the ITS region only accurately identifies around 75% of all medically relevant fungal species, which has prompted the development of a secondary barcode to increase the resolution power and suitability of DNA barcoding for fungal disease diagnostics. The translational elongation factor 1α (TEF1α) was selected in 2015 as a secondary fungal DNA barcode, but it has not been implemented into practice, due to the absence of a reference database. Here, we have established a quality-controlled reference database for the secondary barcode that together with the ISHAM-ITS database, forms the ISHAM barcode database, available online at http://its.mycologylab.org/ . We encourage the mycology community for active contributions.

scholarly journals The Effect of Weathering on Salt Release from Coal Mine Spoils

Minerals ◽  
2019 ◽  
Vol 9 (12) ◽  
pp. 760
Author(s):  
Melinda Hilton ◽  
Mandana Shaygan ◽  
Neil McIntyre ◽  
Thomas Baumgartl ◽  
Mansour Edraki
Keyword(s):  
Particle Size ◽  
Coal Mine ◽  
Chemical Weathering ◽  
Physical Weathering ◽  
Particle Size Fractions ◽  
Mine Spoils ◽  
Weathering Processes ◽  
Three Samples ◽  
Two Samples ◽  
Physical And Chemical

Coal mine spoils have the potential to create environmental impacts, such as salt load to surrounding environments, particularly when exposed to weathering processes. This study was conducted to understand the effect of physical and chemical weathering on the magnitude, rate, and dynamics of salt release from different coal mine spoils. Five spoil samples from three mines in Queensland were sieved to three different particle size fractions (<2 mm, 2–6 mm, and >6 mm). Two samples were dispersive spoils, and three samples were nondispersive spoils. The spoils were subjected to seven wet–dry cycles, where the samples were periodically leached with deionised water. The rate, magnitude, and dynamics of solutes released from spoils were spoil specific. One set of spoils did not show any evidence of weathering, but initially had higher accumulation of salts. In contrast, broad oxidative weathering occurred in another set of spoils; this led to acid generation and resulted in physical weathering, promoting adsorption–desorption and dissolution and, thus, a greater release of salts. This study indicated that the rate and magnitude of salt release decreased with increasing particle size. Nevertheless, when the spoil is dispersive, the degree of weathering manages salt release irrespective of initial particle size. This study revealed that the long-term salt release from spoils is not only governed by geochemistry, weathering degree, and particle size but also controlled by the water/rock ratio and hydrological conditions of spoils.

scholarly journals A Study of the Micropore Structure of Carbonized Rayon Yarn by Nitrogen Adsorption and Nonane Pre-Adsorption

1985 ◽  
Vol 2 (2) ◽  
pp. 89-95 ◽  
Author(s):  
J. N. Bohra ◽  
K. S. W. Sing
Keyword(s):  
External Surface ◽  
Nitrogen Adsorption ◽  
The Other ◽  
Adsorption Method ◽  
Micropore Structure ◽  
Surface Areas ◽  
Three Samples ◽  
Two Samples ◽  
Before And After ◽  
Gain Access

Adsorption isotherms of nitrogen have been determined at 77 K on three samples of carbonized rayon yarn, both before and after the pre-adsorption of n-nonane. In their original state the three samples were all highly microporous. Application of the αs-method of isotherm analysis reveals that their micropore volumes were 0·17–0·19 cm3g−1 and their external surface areas 20–27 m2g−1 (the corresponding BET areas being 427–483 m2g−1). Nonane pre-adsorption resulted in blockage of the entire micropore structure only in the case of one sample: micropore volumes ∼0·1 cm3g−1 were still available for nitrogen adsorption in the other two samples. It appears that nitrogen molecules were able to gain access to some parts of these micropore structures through wider pore entrances which were not completely blocked by the pre-adsorbed nonane. The work has shown that the nonane pre-adsorption method requires further investigation before it can be used with confidence for the assessment of microporosity.

scholarly journals Development and Application of a Quantitative PCR Detection Method to Quantify Venturia oleaginea in Asymptomatic Olive (Olea europaea) Leaves

2020 ◽  
Vol 110 (3) ◽  
pp. 547-555
Author(s):  
Silvia Scibetta ◽  
Giovanni E. Agosteo ◽  
Ahmed Abdelfattah ◽  
Maria G. Li Destri Nicosia ◽  
Santa O. Cacciola ◽  
...  
Keyword(s):  
Quantitative Pcr ◽  
High Throughput Sequencing ◽  
Current Knowledge ◽  
Leaf Growth ◽  
Its Region ◽  
Qpcr Assay ◽  
Detection Methods ◽  
Effective Control ◽  
Its2 Region

Olive leaf spot (OLS), caused by Venturia oleaginea, is one of the most common and serious diseases of olive trees in the Mediterranean region. Understanding the pathogen life cycle is important for the development of effective control strategies. Current knowledge is incomplete owing to a lack of effective detection methods. It is extremely difficult to culture V. oleaginea in vitro, so primers were designed to amplify and sequence the internal transcribed spacer ITS1-5.8S-ITS2 region of the fungus directly from infected olive leaves. Sanger sequencing indicated a unique ITS region present in the European strains screened, confirming the appropriateness of the target region for developing a quantitative PCR (qPCR) assay. Furthermore, high-throughput sequencing of the same region excluded the presence of other Venturia species in the olive phyllosphere. The qPCR assay proved very specific and sensitive, enabling the detection of approximately 26 copies of target DNA. The analysis of symptomless leaves during early stages of the epidemic from the end of winter through spring revealed a similar quantity of pathogen DNA regardless of the leaf growth stage. In contrast, the pathogen titer changed significantly during the season. Data indicated that leaf infections start earlier than expected over the season and very young leaves are as susceptible as adult leaves. These findings have important practical implications and suggest the need for improved scheduling of fungicide treatments. The qPCR assay represents a valuable tool providing quantitative results and enables detection of V. oleaginea in all olive organs, including those in which OLS cannot be studied using previously available methods.

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