scholarly journals Exploring the Diversity of Active Ureolytic Bacteria in the Rumen by Comparison of cDNA and gDNA

Animals ◽  
2020 ◽  
Vol 10 (11) ◽  
pp. 2162
Author(s):  
Sijia Liu ◽  
Nan Zheng ◽  
Shengguo Zhao ◽  
Jiaqi Wang
Keyword(s):  
Dairy Cows ◽  
Beta Diversity ◽  
Transcriptional Activity ◽  
Rumen Fluid ◽  
Diversity Indices ◽  
Sampling Time ◽  
Operational Taxonomic Units ◽  
High Transcriptional Activity ◽  
Significant Difference ◽  
Ureolytic Bacteria

In this study we revealed the diversity of active ureolytic bacteria in the rumen by compared ureC amplicons between gDNA and cDNA. Rumen fluid was collected from four Holstein dairy cows with rumen fistulas at 0, 2, and 6 h after morning feeding. Total microbial gDNA and RNA were isolated, and the RNA was reverse-transcribed into cDNA. The ureC gene amplicons of gDNA and cDNA were produced and sequenced by MiSeq. These results revealed that the sampling time had no significant difference on the alphssa and beta diversity indices of the ureolytic bacteria. The Shannon diversity of the ureC gene for cDNA was greater than that for gDNA (p < 0.05). There were significant difference in the beta diversity of ureolytic bacteria between gDNA and cDNA (p < 0.01), which indicates a shift in the community of active ureolytic bacteria. Approximately 67% of ureC sequences from cDNA could not be confidently classified at the genus level. The active ureolytic bacteria were mainly from Helicobacter, Herbaspirillum, Clostridium, Paenibacillus, Synechococcus, and Sphingobacterium sp. Changes in the operational taxonomic units revealed that the top abundant ureC genes were mostly consistent between gDNA and cDNA, and most differences occurred in the ureC genes with lower abundances. These results revealed distinct ureolytic bacteria community profiles based on gDNA and cDNA. The dominant ureolytic bacteria had high transcriptional activity, and the differential were mainly distributed in the genus of low abundance.

scholarly journals Prevalence of latent acidotic stress in dairy cows in the Şanliurfa region

2020 ◽  
Vol 76 (07) ◽  
pp. 6424-2020
Author(s):  
PELIN FATOŞ POLAT DİNÇER ◽  
YUSUF GÜL
Keyword(s):  
Methylene Blue ◽  
Dairy Cows ◽  
Rumen Fluid ◽  
The Body ◽  
Control Group ◽  
Acid Base ◽  
Urine Ph ◽  
Reduction Time ◽  
Significant Difference ◽  
Methylene Blue Reduction

This study aimed to determine the incidence of latent acidotic stress (LAS), which is an important problem in dairy cow breeding in Turkey, to investigate net acid-base excretion in urine, and to provide veterinary doctors with information about the early diagnosis and treatment of LAS. Two study groups were formed according to the rumen fluid pH values: LAS group (19 cows) with 5.2 < pH < 6.0 (19 cows) and healthy group (81 cows) with 6.0 < pH < 7.2. Blood, urine and ruminal fluid samples were taken after a general clinical examination of the animals. The physical properties of the rumen fluid, methylene blue reduction time, total infusoria number, and volatile fatty acid (VFA) amounts were determined. In addition, examinations of blood gases, urine pH, and net acid-base excretion (NABE) were performed. The general physical examination did not reaveal any statistically significant difference in the body temperature between the LAS group (n = 19) and the control group (n = 81) (p = 0.614), but a significant increase in the heartbeat, respiratory frequency, and the number of rumen movements was observed in the LAS group (p = 0.001). The following findings were observed in the rumen fluid from cows of the LAS group: decreased methylene blue reduction time (p = 0.001), decreased pH (p = 0.001) and infusoria density (p = 0.001), increased sedimentation time (p = 0.001) and total VFA amount (p = 0.001), no flotation. Compared with the healthy cows, the LAS group showed decreased blood pH (p = 0.001) and oxygen pressure (pO2) (p = 0.001), increased carbon dioxide pressure (pCO2), base excess (BE) and bicarbonate (HCO3) values (p = 0.001), and decreased urine pH (p = 0.001) and net acid-base excretion (p = 0.001) values. The incidence of latent acidotic stress in dairy cows in the Sanliurfa region was determined as 19%. In addition, it was concluded that net acid-base excretion values in urine can be used as an auxiliary parameter in the diagnosis of LAS and can be easily applied in the field.

scholarly journals The Fecal Bacterial Microbiota in Horses with Equine Recurrent Uveitis

Animals ◽  
2021 ◽  
Vol 11 (3) ◽  
pp. 745
Author(s):  
Michelle Martin de Bustamante ◽  
Diego Gomez ◽  
Jennifer MacNicol ◽  
Ralph Hamor ◽  
Caryn Plummer
Keyword(s):  
Beta Diversity ◽  
High Throughput Sequencing ◽  
Illumina Miseq ◽  
Diversity Indices ◽  
Rrna Gene ◽  
Linear Discriminant ◽  
Alpha And Beta Diversity ◽  
Bacterial Microbiota ◽  
Healthy Control ◽  
Equine Recurrent Uveitis

The objective of this study was to describe and compare the fecal bacterial microbiota of horses with equine recurrent uveitis (ERU) and healthy horses using next-generation sequencing techniques. Fecal samples were collected from 15 client-owned horses previously diagnosed with ERU on complete ophthalmic examination. For each fecal sample obtained from a horse with ERU, a sample was collected from an environmentally matched healthy control with no evidence of ocular disease. The Illumina MiSeq sequencer was used for high-throughput sequencing of the V4 region of the 16S rRNA gene. The relative abundance of predominant taxa, and alpha and beta diversity indices were calculated and compared between groups. The phyla Firmicutes, Bacteroidetes, Verrucomicrobia, and Proteobacteria predominated in both ERU and control horses, accounting for greater than 60% of sequences. Based on linear discriminant analysis effect size (LEfSe), no taxa were found to be enriched in either group. No significant differences were observed in alpha and beta diversity indices between groups (p > 0.05 for all tests). Equine recurrent uveitis is not associated with alteration of the gastrointestinal bacterial microbiota when compared with healthy controls.

scholarly journals p53 Mutation at Serine 249 and Its Gain of Function Are Highly Related to Hepatocellular Carcinoma after Smoking Exposure

2021 ◽  
pp. 1-11
Author(s):  
Huai Wang ◽  
Lu Chen ◽  
Tong Zhou ◽  
Zhongwei Zhang ◽  
Canwei Zeng
Keyword(s):  
Hepatocellular Carcinoma ◽  
Transcriptional Activity ◽  
Direct Sequencing ◽  
Close Correlation ◽  
P53 Mutation ◽  
Gain Of Function ◽  
Reverse Transcription Pcr ◽  
Smoking Exposure ◽  
Significant Difference ◽  
Dose Response Effect

<b><i>Background:</i></b> It has been convincingly suggested that a close correlation exists between the incidence of hepatocellular carcinoma (HCC) and cigarette smoking. However, the underlying effect of smoking on HCC is not clear. <b><i>Methods:</i></b> A binary unconditional logistic regression was used for the data on a total of 300 cases and 612 controls. The approach of functional analysis of separated alleles in yeast and direct sequencing of TP53 mutations were applied to analyze the p53 status in the HCC group. The relationship between p53 mutation at serine 249 (p53-RS) and smoking was assessed. Quantitative reverse transcription PCR was employed for the evaluation to transcriptional activity of p53 and p53-RS. <b><i>Results:</i></b> Smoking was linked to the risk of HCC with an increased dose-response effect. Moreover, among subjects who did not drink, the risks of HCC were significantly increased for smokers between HCC and controls. Besides, there was an increase in the number of HCC in smokers compared to nonsmokers after exclusion of HBV and/or HCV infection. Also, a significant difference was observed in the incidence of p53-RS between smokers and nonsmokers the HCC group. Furthermore, the p53-RS transcriptional activity was significantly increased in tumor tissues. <b><i>Conclusions:</i></b> It strongly demonstrated that tobacco smoking is positively and independently associated with HCC, which may be attributed to p53-RS and its gain of function.

Landscape patterns influence communities of medium- to large-bodied vertebrates in undisturbed terra firme forests of French Guiana

2015 ◽  
Vol 31 (5) ◽  
pp. 423-436 ◽  
Author(s):  
Cécile Richard-Hansen ◽  
Gaëlle Jaouen ◽  
Thomas Denis ◽  
Olivier Brunaux ◽  
Eric Marcon ◽  
...  
Keyword(s):  
Beta Diversity ◽  
Amazon Basin ◽  
French Guiana ◽  
Forest Ecology ◽  
Habitat Preferences ◽  
Diversity Indices ◽  
Landscape Patterns ◽  
Line Transect ◽  
Terra Firme ◽  
Association Index

Abstract:Whereas broad-scale Amazonian forest types have been shown to influence the structure of the communities of medium- to large-bodied vertebrates, their natural heterogeneity at smaller scale or within the terra firme forests remains poorly described and understood. Diversity indices of such communities and the relative abundance of the 21 most commonly observed species were compared from standardized line-transect data across 25 study sites distributed in undisturbed forests in French Guiana. We first assessed the relevance of a forest typology based on geomorphological landscapes to explain the observed heterogeneity. As previously found for tree beta-diversity patterns, this new typology proved to be a non-negligible factor underlying the beta diversity of the communities of medium- to large bodied vertebrates in French Guianan terra firme forests. Although the species studied are almost ubiquitous across the region, they exhibited habitat preferences through significant variation in abundance and in their association index with the different landscape types. As terra firme forests represent more than 90% of the Amazon basin, characterizing their heterogeneity – including faunal communities – is a major challenge in neotropical forest ecology.

Rumen Microbiota Alterations During Ketosis is Associated with the Development of Mastitis in Dairy Cows

2021 ◽  
Author(s):  
Kaihe Xiang ◽  
Xiaoyu Hu ◽  
Ruiying Mu ◽  
Shuang Li ◽  
Ying Wang ◽  
...  
Keyword(s):  
Dairy Cows ◽  
Rumen Fluid ◽  
Animal Husbandry ◽  
16S Rrna Gene Sequencing ◽  
Rrna Gene ◽  
Rumen Microbiota ◽  
Metabolism Disorder ◽  
Clinical Investigations ◽  
Rrna Gene Sequencing ◽  
Serious Disease

Abstract Backgroud: Mastitis is the most serious disease endangering animal husbandry, especially dairy farming. Clinical investigations indicated that cows suffering from ketosis have a higher probability of mastitis. Rumen microbiota is closely related to ruminant health. However, it is not clear what role it plays in this process.Results: The microbiota in rumen fluid and milk from ketosis cows were determined by 16S rRNA gene sequencing. The results showed that the richness of bacterial community both in rumen and milk were changed in ketosis cows. The abundance of genus Prevotella, Ruminococcus, Succinivibrionaceae_UCG-001 and Streptococcus in rumen fluid from ketosis cows decreased significantly and were negatively correlated with blood BHBA and milk SCC. In contrast, the abundance of genus Luteimonas, Thermomonas, Christensenellaceae_R-7_group, Rikenellaceae_RC9_gut_group, NK4A214_group, Paracoccus, Acetitomaculum, Prevotellaceae_UCG-003, Deinococcus, Saccharofermentans and Butyrivibrio in rumen fluid from ketosis cows increased significantly and were positively correlated with blood BHBA and milk SCC. In addition, the abundance of F082 and Thermomonas were increased, while the abundance of genus Acinetobacter and UCG-005 were reduced both in milk and rumen fluid in ketosis cows than healthy cows. Conclusions: Ketosis in dairy cows is capable of inducing mastitis. The rumen microbiota of ketotic cows changed significantly and is associated with the development of mastitis. Targeting rumen microbiota regulation may be a promising strategy to prevent metabolism disorder and its secondary diseases in dairy cows.

scholarly journals Effect of heat stress on milk production and its composition of Holstein Friesian crossbred dairy cows

2016 ◽  
Vol 2 (2) ◽  
pp. 190-195 ◽  
Author(s):  
Mahmud Al Reyad ◽  
Md Abid Hasan Sarker ◽  
Md Elias Uddin ◽  
Raihan Habib ◽  
Md Harun Ur Rashid
Keyword(s):  
Heat Stress ◽  
Dairy Cows ◽  
Milk Yield ◽  
Management Practices ◽  
Management Strategies ◽  
Dairy Farm ◽  
Milk Composition ◽  
Mustard Oil ◽  
Holstein Friesian ◽  
Significant Difference

The aim of this research was to observe the effect of heat stress on milk yield and milk compositions of Holstein Friesian crossbred (HF) dairy cows. To fulfill the objectives, a total of 9 Holstein Friesian crossbred cows were selected for this study. Green grasses (German, Para) were supplied adlibitum and concentrate feeds (mixture of wheat bran, rice polish, mustard oil cake, di-calcium phosphate and salt) were supplied at the rate of 2.0 kg/day/cow. Management practices for all the cows were similar following the BAU Dairy farm practices. Data were collected on milk yield (l/h/d), relative humidity (%) and barn temperature (0C). The obtained temperature humidity index (THI) of July, August, September and October were 84.95, 81.99, 81.40 and 79.57, respectively. The highest THI was found in July which indicated higher heat stress during this month. A significant difference (p<0.05) in milk yield of cows was found among different months of July to October. The highest milk yield (6.10±0.50 l/h/d) was found in October among observed months. The compositions of milk such as total solids (TS), solids-not-fat (SNF), fat, protein, lactose, and ash also differed significantly (p<0.01). The highest values (%) of TS, SNF, fat, protein, lactose and ash content of milk were found in October as 12.63, 8.80, 3.83, 3.69, 4.39 and 0.72, respectively and lowest values (%) were in July as 12.20, 8.50, 3.71, 3.50, 4.30 and 0.69, respectively due to the high THI value. From these results, it is concluded that heat stress has strong effect on milk yield and milk composition of HF cows in Bangladesh. Management strategies are needed to minimize heat stress and attain optimal dairy animal performance.Asian J. Med. Biol. Res. June 2016, 2(2): 190-195

scholarly journals DAY-TO-DAY VARIATIONS IN FAT PERCENT OF COW'S MILK

1990 ◽  
Vol 70 (2) ◽  
pp. 731-734 ◽  
Author(s):  
A. S. ATWAL ◽  
J. D. ERFLE
Keyword(s):  
Dairy Cows ◽  
Key Words ◽  
Milk Yield ◽  
Milk Fat ◽  
Rumen Fluid ◽  
Supplemental Feeding ◽  
Fat Percentage ◽  
Milk Fat Depression ◽  
Daily Milk Yield ◽  
Daily Milk

Large day-to-day variations in milk fat, particularly for the morning milkings, were observed in 36 Holstein cows. Changes in percent fat were gradual and produced wavelike patterns in a number of instances. Supplemental feeding of long hay had no effect on acetate/propionate ratio in rumen fluid, daily milk yield or weighted milk fat percentage. Key words: Dairy cows, milk, fat depression, hay

scholarly journals Diversity Indices of Plant Communities and Their Rhizosphere Microbiomes: An Attempt to Find the Connection

2021 ◽  
Vol 9 (11) ◽  
pp. 2339
Author(s):  
Aleksei O. Zverev ◽  
Arina A. Kichko ◽  
Aleksandr G. Pinaev ◽  
Nikolay A. Provorov ◽  
Evgeny E. Andronov
Keyword(s):  
Microbial Communities ◽  
Plant Communities ◽  
Plant Diversity ◽  
Beta Diversity ◽  
Mutual Influence ◽  
Plant Root ◽  
Alpha Diversity ◽  
Diversity Indices ◽  
Alpha And Beta Diversity ◽  
Highly Correlated

The rhizosphere community represents an “ecological interface” between plant and soil, providing the plant with a number of advantages. Despite close connection and mutual influence in this system, the knowledge about the connection of plant and rhizosphere diversity is still controversial. One of the most valuable factors of this uncertainty is a rough estimation of plant diversity. NGS sequencing can make the estimations of the plant community more precise than classical geobotanical methods. We investigate fallow and crop sites, which are similar in terms of environmental conditions and soil legacy, yet at the same time are significantly different in terms of plant diversity. We explored amplicons of both the plant root mass (ITS1 DNA) and the microbial communities (16S rDNA); determined alpha- and beta-diversity indices and their correlation, and performed differential abundance analysis. In the analysis, there is no correlation between the alpha-diversity indices of plants and the rhizosphere microbial communities. The beta-diversity between rhizosphere microbial communities and plant communities is highly correlated (R = 0.866, p = 0.01). ITS1 sequencing is effective for the description of plant root communities. There is a connection between rhizosphere communities and the composition of plants, but on the alpha-diversity level we found no correlation. In the future, the connection of alpha-diversities should be explored using ITS1 sequencing, even in more similar plant communities—for example, in different synusia.

scholarly journals Is rumenocentesis a safe technique to collect rumen fluid in dairy cows?

2018 ◽  
Vol 69 (3) ◽  
pp. 1135 ◽  
Author(s):  
N. PANOUSIS ◽  
G. KITKAS ◽  
G. E. VALERGAKIS
Keyword(s):  
Dairy Cows ◽  
Milk Yield ◽  
Rumen Fluid ◽  
Small Diameter ◽  
Dairy Farm ◽  
Holstein Cows ◽  
Short Term ◽  
Safe Technique ◽  
Daily Milk Yield ◽  
Daily Milk

Subacute ruminal acidosis is a major issue in dairy cattle and a definite diagnosis is only established by measuring the rumen fluid pH, most credibly collected by rumenocentesis. However, due to its invasive nature, there is still some debate whether it is a safe method or poses risks for cows’ health and welfare. The aim of the study was to retrospectively evaluate the safety of rumenocentesis as a technique to obtain rumen fluid in dairy cows. Results were derived from 2 studies. In study 1, rumenocentesis was performed in 153 Holstein cows from 12 herds, once, between 10 and 90 days in milk (DIM). In study 2, 83 Holstein cows from a dairy farm were repeatedly subjected to rumenocentesisat 30, 90 and 150 DIM. From the 83 cows that were initially enrolled, 8 were culled before the end of the study for reasons irrelative to rumenocentesis; therefore, 236 rumenocenteses were actually performed in study 2 (3 times in 75 cows, twice in 3 cows and once in 5 cows). All cows were monitored for 10 days after rumenocentesis for presence of complications. In addition, daily milk yield was automatically recorded for each cow in study 2 to detect any possiblepost-rumenocentesis short-term reduction of milk yield. Minor only complications were recorded in 7 cases: in 4/153 (2.61%) and 3/236 (1.27%) rumenocenteses in studies 1 and 2, respectively. Small diameter abscesses in 6 cows (3 in study 1 and 3 in study 2) and a larger one in 1 cow in study 1 were observed. The 3 small abscesses in study 2 were all recorded after the 1st rumenocentesis, at DIM 30. All 7 cases were resolved spontaneously within two weeks. Moreover, short-term daily milk yield of study 2 cows was not affected by rumenocentesis. The conclusion is that rumenocentesis is a safe technique to collect small volume of rumen fluid for SARA diagnosis, which does not compromise cows’ health and welfare when appropriately performed.

scholarly journals Effects of Saccharomyces cerevisiae Culture on Ruminal Fermentation, Blood Metabolism, and Performance of High-Yield Dairy Cows

Animals ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. 2401
Author(s):  
Xiaoge Sun ◽  
Yue Wang ◽  
Erdan Wang ◽  
Shu Zhang ◽  
Qianqian Wang ◽  
...  
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Dairy Cows ◽  
Milk Yield ◽  
Inflammatory Cytokines ◽  
Rumen Fluid ◽  
Fat Content ◽  
High Yield ◽  
Control Group ◽  
And Performance ◽  
Basal Ration

High-yield dairy cows with high-concentrate diets are more prone to experiencing health problems associated with rumen microbial imbalance. This study assessed the effects of Saccharomyces cerevisiae culture (SC), a food supplement, on ruminal pH, volatile fatty acid (VFA), inflammatory cytokines, and performance of high-yield dairy cows. Forty Holstein cows with similar characteristics (e.g., milk yield, days of milk, and parity) were randomly divided into two groups: an experimental group fed the basal ration supplemented with the SC of 100 g of SC per cow per day (hour, SC group), and a control group fed the same basal ration diet without SC (i.e., CON group). On average, the supplementation of SC started at 73 days of lactation. The experimental period lasted approximately 70 days (from 18 January to 27 March 2020), including 10 days for dietary adaptation. Milk yield was recorded daily. Rumen fluid and milk samples were collected after 2 h of feeding in the morning of day 0, 15, 30, and 60. The data showed that rumen pH increased (p < 0.05) when cows were provided with SC. On average, the cows in the SC group produced 1.36 kg (p < 0.05) more milk per day than those in the CON group. Milk fat content of cows in the SC group was also higher (4.11% vs. 3.96%) (p < 0.05). Compared with the CON group, the concentration of acetic acid in the rumen fluid of dairy cows in the SC group was significantly higher (p < 0.05). There were no differences (p > 0.05) found in milk protein content and propionic acid between groups. The SC group had a tendency increase in butyric acid (p = 0.062) and total VFA (p = 0.058). The result showed that SC supplementation also enhanced the ratio between acetic and propionic. Most of the mean inflammatory cytokine (IL-2, IL-6, γ-IFN, and TNF-α) concentrations (p < 0.05) of the SC group were lower than CON group. This study demonstrated that high-yield cows receiving supplemental SC could produce more milk with higher fat content, have higher rumen acetate, and potentially less inflammatory cytokines.

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