scholarly journals Effect of RIP Overexpression on Abiotic Stress Tolerance and Development of Rice

2021 ◽  
Vol 22 (3) ◽  
pp. 1434
Author(s):  
Pieter Wytynck ◽  
Jeroen Lambin ◽  
Simin Chen ◽  
Sinem Demirel Asci ◽  
Isabel Verbeke ◽  
...  
Keyword(s):  
Methyl Jasmonate ◽  
Stress Responses ◽  
Abiotic Stress Tolerance ◽  
Protein Translation ◽  
Ribosome Inactivating Proteins ◽  
Close Proximity ◽  
Inhibit Protein Translation ◽  
Plant Ribosomes ◽  
A Cell ◽  
Type 3

Ribosome-inactivating proteins (RIPs) are a class of cytotoxic enzymes that can inhibit protein translation by depurinating rRNA. Most plant RIPs are synthesized with a leader sequence that sequesters the proteins to a cell compartment away from the host ribosomes. However, several rice RIPs lack these signal peptides suggesting they reside in the cytosol in close proximity to the plant ribosomes. This paper aims to elucidate the physiological function of two nucleocytoplasmic RIPs from rice, in particular, the type 1 RIP referred to as OsRIP1 and a presumed type 3 RIP called nuRIP. Transgenic rice lines overexpressing these RIPs were constructed and studied for developmental effects resulting from this overexpression under greenhouse conditions. In addition, the performance of transgenic seedlings in response to drought, salt, abscisic acid and methyl jasmonate treatment was investigated. Results suggest that both RIPs can affect methyl jasmonate mediated stress responses.

scholarly journals Structure and Activity of a Cytosolic Ribosome-Inactivating Protein from Rice

Toxins ◽  
2019 ◽  
Vol 11 (6) ◽  
pp. 325 ◽  
Author(s):  
Jeroen De Zaeytijd ◽  
Pierre Rougé ◽  
Guy Smagghe ◽  
Els J.M. Van Damme
Keyword(s):  
Physiological Role ◽  
Protein Translation ◽  
Suspension Cells ◽  
Ribosome Inactivating Proteins ◽  
Inhibit Protein Translation ◽  
Plant Ribosomes ◽  
First Time

Ribosome-inactivating proteins (RIPs) are cytotoxic enzymes that inhibit protein translation by depurinating ribosomal RNA. Although most plant RIPs are synthesized with leader sequences that sequester them away from the host ribosomes, several RIPs from cereals lack these signal peptides and therefore probably reside in the cytosol near the plant ribosomes. More than 30 RIP genes have been identified in the rice (Oryza sativa spp. japonica) genome, many of them lacking a signal peptide. This paper focuses on a presumed cytosolic type-1 RIP from rice, referred to as OsRIP1. Using 3D modeling it is shown that OsRIP1 structurally resembles other cereal RIPs and has an active site that meets the requirements for activity. Furthermore, localization studies indicate that OsRIP1-eGFP fusion proteins reside in the nucleocytoplasmic space when expressed in epidermal cells of Nicotiana benthamiana or Arabidopsis thaliana suspension cells. Finally, OsRIP1 was recombinantly produced in Escherichia coli and was demonstrated to possess catalytic activity. Interestingly, this recombinant RIP inactivates wheat ribosomes far less efficiently than rabbit ribosomes in an in vitro system. These findings raise some interesting questions concerning the mode of action and physiological role of OsRIP1. This is the first time a RIP from rice is investigated at protein level and is shown to possess biological activity.

scholarly journals The Streptomyces coelicolor genome encodes a type I ribosome-inactivating protein

Microbiology ◽  
2010 ◽  
Vol 156 (10) ◽  
pp. 3021-3030 ◽  
Author(s):  
Ana G. Reyes ◽  
Nick Geukens ◽  
Philip Gutschoven ◽  
Stijn De Graeve ◽  
René De Mot ◽  
...  
Keyword(s):  
Shiga Toxin ◽  
Streptomyces Coelicolor ◽  
Protein Translation ◽  
Type I ◽  
Free System ◽  
Ribosome Inactivating Proteins ◽  
E Coli ◽  
Genes Encoding ◽  
A Cell ◽  
A Subunit

Ribosome-inactivating proteins (RIPs) are cytotoxic N-glycosidases identified in numerous plants, but also constitute a subunit of the bacterial Shiga toxin. Classification of plant RIPs is based on the absence (type I) or presence (type II) of an additional lectin module. In Shiga toxin, sugar binding is mediated by a distinct RIP-associated homopentamer. In the genome of two actinomycetes, we identified RIP-like proteins that resemble plant type I RIPs rather than the RIP subunit (StxA) of Shiga toxin. Some representatives of β- and γ-proteobacteria also contain genes encoding RIP-like proteins, but these are homologous to StxA. Here, we describe the isolation and initial characterization of the RIP-like gene product SCO7092 (RIPsc) from the Gram-positive soil bacterium Streptomyces coelicolor. The ripsc gene was expressed in Escherichia coli as a recombinant protein of about 30 kDa, and displayed the characteristic N-glycosidase activity causing specific rRNA depurination. In Streptomyces lividans and E. coli, RIPsc overproduction resulted in a dramatic decrease in the growth rate. In addition, intracellular production was deleterious for Saccharomyces cerevisiae. However, when applied externally to microbial cells, purified RIPsc did not display antibacterial or antifungal activity, suggesting that it cannot enter these cells. In a cell-free system, however, purified S. coelicolor RIPsc protein displayed strong inhibitory activity towards protein translation.

scholarly journals WRKY Proteins: Signaling and Regulation of Expression during Abiotic Stress Responses

2015 ◽  
Vol 2015 ◽  
pp. 1-17 ◽  
Author(s):  
Aditya Banerjee ◽  
Aryadeep Roychoudhury
Keyword(s):  
Abiotic Stress ◽  
Stress Responses ◽  
Biotic Stress ◽  
Abiotic Stresses ◽  
Abiotic Stress Tolerance ◽  
Plant Signaling ◽  
Biological Functions ◽  
Abiotic And Biotic Stress ◽  
Regulation Of Expression ◽  
Wrky Proteins

WRKY proteins are emerging players in plant signaling and have been thoroughly reported to play important roles in plants under biotic stress like pathogen attack. However, recent advances in this field do reveal the enormous significance of these proteins in eliciting responses induced by abiotic stresses. WRKY proteins act as major transcription factors, either as positive or negative regulators. Specific WRKY factors which help in the expression of a cluster of stress-responsive genes are being targeted and genetically modified to induce improved abiotic stress tolerance in plants. The knowledge regarding the signaling cascade leading to the activation of the WRKY proteins, their interaction with other proteins of the signaling pathway, and the downstream genes activated by them are altogether vital for justified targeting of theWRKYgenes. WRKY proteins have also been considered to generate tolerance against multiple abiotic stresses with possible roles in mediating a cross talk between abiotic and biotic stress responses. In this review, we have reckoned the diverse signaling pattern and biological functions of WRKY proteins throughout the plant kingdom along with the growing prospects in this field of research.

scholarly journals Histone Deacetylase Gene SlHDA3 Involves in ABA, Drought and Salt Response in Tomato 

2021 ◽  
Author(s):  
Jun-E Guo
Keyword(s):  
Abiotic Stress ◽  
Drought Stress ◽  
Transgenic Plants ◽  
Histone Deacetylase ◽  
Stress Responses ◽  
Abiotic Stress Tolerance ◽  
Histone Deacetylation ◽  
New Members ◽  
Modifying Factors ◽  
Mda Content

Abstract Histone deacetylation, one of vital modifying factors of post-translation modifications, which is catalyzed by histone deacetylase. The genes of histone deacetylase(HDACs) play critical roles in various stress responses. However, detailed functions for most SlHDAC members in tomato still unknown. In this work, we found that a histone deacetylase, SlHDA3, involved in response to NaCl and drought abiotic stresses. The expression of SlHDA3 was also induced significantly by NaCl, drought stress and endogenous hormone treatments. Silencing of SlHDA3 in tomato, the RNAi transgenic plants presented depressed tolerance to drought and salt stresses compared with WT tomato. The results of sensitivity analysis indicated that the length of hypocotyl and roots in RNAi plants were more inhibited by ABA and salt stress than that of WT at post-germination stage. Worse growth status were exhibited in SlHDA3 transgenic plants under salt and drought stress as are evaluated by a series of physiological parameters related to stress responses, such as decreased RWC, survival rate, ABA content, chlorophyll content and CAT activity, and increased MDA content and proline content. Besides, the expressions analysis of transgenic plants showed that the transcripts of genes which associated with responses to abiotic stress were down-regulated under salt-stressed conditions. To sum up, SlHDA3 acts as a stress-responsive gene, plays a role in the positive regulation of abiotic stress tolerance, and may be one of the new members in the engineering breeding of salt- and drought-tolerant tomato.

Kozak Sequence Polymorphism of the Glycoprotein (GP) Ib Gene Is a Major Determinant of the Plasma Membrane Levels of the Platelet GP Ib-IX-V Complex

Blood ◽  
1999 ◽  
Vol 94 (1) ◽  
pp. 186-191 ◽  
Author(s):  
Vahid Afshar-Kharghan ◽  
Chester Q. Li ◽  
Mohammad Khoshnevis-Asl ◽  
José A. López
Keyword(s):  
Consensus Sequence ◽  
Protein Translation ◽  
In Vitro Transcription ◽  
Sequence Polymorphism ◽  
Kozak Sequence ◽  
Adhesion Receptor ◽  
Initial Adhesion ◽  
A Cell ◽  
Human Polymorphism

Despite the known importance of the sequences surrounding ATG start codons (Kozak sequences) for efficient translation of proteins, few reports have appeared that describe the natural variations in these sequences. Here, we report a human polymorphism in the Kozak sequence of the platelet adhesion receptor, glycoprotein (GP) Ib, a component of the GP Ib-IX-V complex, which mediates the initial adhesion of platelets to the blood vessel wall following injury. The polymorphism is based on the presence of either thymine (T) or cytosine (C) at position −5 from the initiator ATG in the GP Ib gene. The less common allele, −5C, represented 8% to 17% of the alleles in four ethnic populations surveyed. This allele more closely resembles the sequence considered optimal for efficient initiation of protein translation and is associated with increased expression of the receptor on the cell membrane, both in transfected cells and in the platelets of individuals carrying the allele. In vitro transcription/translation studies indicate that the increased expression results from more efficient translation of the −5C form of the GP Ib mRNA. Other mutations made to approximate more closely the consensus sequence described by Kozak did not increase expression of the receptor. This is the first known description of Kozak sequence polymorphism as a determinant of the surface levels of a cell adhesion receptor. This polymorphism may influence an individual’s susceptibility for the development of cardiovascular disease.

scholarly journals miR-27 and miR-125 Distinctly Regulate Muscle-Enriched Transcription Factors in Cardiac and Skeletal Myocytes

2015 ◽  
Vol 2015 ◽  
pp. 1-6 ◽  
Author(s):  
Estefania Lozano-Velasco ◽  
Jennifer Galiano-Torres ◽  
Alvaro Jodar-Garcia ◽  
Amelia E. Aranega ◽  
Diego Franco
Keyword(s):  
Transcription Factors ◽  
Cardiac Development ◽  
Protein Translation ◽  
Cell Type ◽  
Atrial Cardiomyocytes ◽  
Skeletal Myocytes ◽  
Specific Manner ◽  
A Cell ◽  
Cell Type Specific

MicroRNAs are noncoding RNAs of approximately 22–24 nucleotides which are capable of interacting with the 3′ untranslated region of coding RNAs (mRNAs), leading to mRNA degradation and/or protein translation blockage. In recent years, differential microRNA expression in distinct cardiac development and disease contexts has been widely reported, yet the role of individual microRNAs in these settings remains largely unknown. We provide herein evidence of the role of miR-27 and miR-125 regulating distinct muscle-enriched transcription factors. Overexpression of miR-27 leads to impair expression ofMstnandMyocdin HL1 atrial cardiomyocytes but not in Sol8 skeletal muscle myoblasts, while overexpression of miR-125 resulted in selective upregulation ofMef2din HL1 atrial cardiomyocytes and downregulation in Sol8 cells. Taken together our data demonstrate that a single microRNA, that is, miR-27 or miR-125, can selectively upregulate and downregulate discrete number of target mRNAs in a cell-type specific manner.

scholarly journals Phyllosphere-inhabiting endophytic bacteria feature a stationary phase-like lifestyle

2021 ◽  
Author(s):  
André C Velásquez ◽  
José C Huguet-Tapia ◽  
Sheng Yang He
Keyword(s):  
Stationary Phase ◽  
Pseudomonas Syringae ◽  
Stress Responses ◽  
Endophytic Bacteria ◽  
Physiological State ◽  
Protein Translation ◽  
Transcriptomic Analysis ◽  
In Planta ◽  
Population Densities

Plants are in constant association with a variety of microbes, and although much is known about how symbiotic and pathogenic microbes interact with plants, less is known about the population dynamics, adaptive traits, and transcriptional features of endophytic commensal microbes that live inside leaves. In this study, we evaluated the long-term population and transcriptional dynamics of two bacterial microbiota endophytes and compared them to those of a commensal-simulating non-pathogenic mutant of the bacterial pathogen Pseudomonas syringae. We found that population densities of all three endophytic phyllosphere bacteria remained static over a long period of time, which was caused by a continual equilibrium between bacterial multiplication and death, as evidenced by treatment of plants with antibiotics that only targeted dividing bacteria or by in planta visualization of bacteria carrying a fluorescent division reporter. Population stasis could not be explained by a lack of resources, as Arabidopsis leaves could support population densities up to 100 times higher than the normal microbiota populations, nor was population stasis reversed by significantly quenching PAMP-triggered immunity. Long-term temporal in planta transcriptomic analysis of these three bacterial endophytes revealed up-regulation of protein translation, the generation of energy, and the response to stress, and interestingly, for the microbiota strains, the longer the bacteria remained inside plants, the greater the up-regulation of some of these processes. Further transcriptomic analysis of in planta populations of commensal-simulating Pseudomonas syringae revealed a remarkable resemblance to those of in vitro bacteria in stationary phase, a metabolically active physiological state in which the production of secondary metabolites and stress responses are induced. This study provides novel insight into how endophytic bacteria survive and thrive inside plant leaves, and reshapes our current understanding of what it means to be part of the endophytic microbiota in the phyllosphere.

scholarly journals Unraveling neutrophil–Yersinia interactions during tissue infection

F1000Research ◽  
2019 ◽  
Vol 8 ◽  
pp. 1046 ◽  
Author(s):  
Joan Mecsas
Keyword(s):  
Yersinia Pseudotuberculosis ◽  
Signal Transduction Pathway ◽  
Effector Proteins ◽  
Tissue Infection ◽  
Host Cells ◽  
Serum Factors ◽  
Bacterial Adhesins ◽  
Animal Pathogens ◽  
Close Proximity ◽  
Type 3

The human and animal pathogens Yersinia pestis, which causes bubonic and pneumonic plague, and Yersinia pseudotuberculosis and Yersinia enterocolitica, which cause gastroenteritis, share a type 3 secretion system which injects effector proteins, Yops, into host cells. This system is critical for virulence of all three pathogens in tissue infection. Neutrophils are rapidly recruited to infected sites and all three pathogens frequently interact with and inject Yops into these cells during tissue infection. Host receptors, serum factors, and bacterial adhesins appear to collaborate to promote neutrophil–Yersinia interactions in tissues. The ability of neutrophils to control infection is mixed depending on the stage of infection and points to the efficiency of Yops and other bacterial factors to mitigate bactericidal effects of neutrophils. Yersinia in close proximity to neutrophils has higher levels of expression from yop promoters, and neutrophils in close proximity to Yersinia express higher levels of pro-survival genes than migrating neutrophils. In infected tissues, YopM increases neutrophil survival and YopH targets a SKAP2/SLP-76 signal transduction pathway. Yet the full impact of these and other Yops and other Yersinia factors on neutrophils in infected tissues has yet to be understood.

scholarly journals Genome-Wide Identification, Characterization and Expression Analysis of the CIPK Gene Family in Potato (Solanum tuberosum L.) and the Role of StCIPK10 in Response to Drought and Osmotic Stress

2021 ◽  
Vol 22 (24) ◽  
pp. 13535
Author(s):  
Rui Ma ◽  
Weigang Liu ◽  
Shigui Li ◽  
Xi Zhu ◽  
Jiangwei Yang ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
Solanum Tuberosum ◽  
Plant Growth ◽  
Osmotic Stress ◽  
Stress Responses ◽  
Solanum Tuberosum L ◽  
Abiotic Stress Tolerance ◽  
Stomatal Closure ◽  
Interacting Protein ◽  
Reverse Transcription Pcr

The potato (Solanum tuberosum L.), one of the most important food crops worldwide, is sensitive to environmental stresses. Sensor–responder complexes comprising calcineurin B-like (CBL) proteins and CBL-interacting protein kinases (CIPKs) not only modulate plant growth and development but also mediate numerous stress responses. Here, using a Hidden Markov Model and BLAST searches, 27 CIPK genes were identified in potato and divided into five groups by phylogenetic analysis and into two clades (intron-poor and intron-rich) by gene structure analysis. Quantitative reverse-transcription PCR (qRT-PCR) assays revealed that StCIPK genes play important roles in plant growth, development and abiotic stress tolerance. Up-regulated expression of StCIPK10 was significantly induced by drought, PEG6000 and ABA. StCIPK10 enhances both the ability of potato to scavenge reactive oxygen species and the content of corresponding osmoregulation substances, thereby strengthening tolerance to drought and osmotic stress. StCIPK10 is located at the intersection between the abscisic acid and abiotic stress signaling pathways, which control both root growth and stomatal closure in potato. In addition, StCIPK10 interacts with StCBL1, StCBL4, StCBL6, StCBL7, StCBL8, StCBL11 and StCBL12, and is specifically recruited to the plasma membrane by StCBL11.

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