scholarly journals Optimal Hyperspectral Characteristics Determination for Winter Wheat Yield Prediction

2018 ◽  
Vol 10 (12) ◽  
pp. 2015 ◽  
Author(s):  
Yao Zhang ◽  
Qiming Qin ◽  
Huazhong Ren ◽  
Yuanheng Sun ◽  
Minzan Li ◽  
...  

Crop growth in different periods influences the final yield. This study started from the agronomic mechanism of yield formation and aimed to extract useful spectral characteristics in different phenological phases, which could directly describe the final yield and dynamic contributions of different phases to the yield formation. Hyperspectral information of the winter wheat canopy was acquired during three important phases (jointing stage, heading stage, and grain-filling stage). An enhanced 2D correlation spectral analysis method modified by mutual information was proposed to identify the sensitive wavebands. The selected wavebands performed well with good mechanism interpretation and close correlation with important crop growth parameters and main physiological activities related to yield formation. The quantitative contribution proportions of plant growth in three phases to the final yield were estimated by determining the coefficients of partial least square models based on full spectral information. They were then used as single-phase weight factors to merge the selected wavebands. The support vector machine model based on the weighted spectral dataset performed well in yield prediction with satisfactory accuracy and robustness. This result would provide rapid and accurate guidance for agricultural production and would be valuable for the processing of hyperspectral remote sensing data.

2020 ◽  
Vol 13 (06) ◽  
pp. 2050029
Author(s):  
Yating Xiong ◽  
Shintaroh Ohashi ◽  
Kazuhiro Nakano ◽  
Weizhong Jiang ◽  
Kenichi Takizawa ◽  
...  

Chronic kidney disease (CKD) is becoming a major public health problem worldwide, and excessive potassium intake is a health threat to patients with CKD. In this study, visible–short-wave near-infrared (Vis–SWNIR) spectroscopy and chemometric algorithms were investigated as nondestructive methods for assessing the potassium concentration in fresh lettuce to benefit the CKD patients’ health. Interactance and transmittance measurements were performed and the competencies were compared based on the multivariate methods of partial least-square regression (PLS) and support vector machine regression (SVR). Meanwhile, several preprocessing methods [first- and second-order derivatives in combination with standard normal variate (SNV)] and wavelength selection method of competitive adaptive reweighted sampling (CARS) were applied to eliminate noise and highlight the spectral characteristics. The PLS models yielded better prediction than the SVR models with higher correlation coefficients ([Formula: see text]) and residual predictive deviation (RPD), and lower root-mean-square error of prediction (RMSEP). Excellent prediction of green leaves was obtained by the interactance measurement with [Formula: see text], [Formula: see text][Formula: see text]mg/100[Formula: see text]g, and [Formula: see text]; while the transmittance spectra of petioles provided optimal prediction with [Formula: see text], [Formula: see text][Formula: see text]mg/100[Formula: see text]g, and RPD[Formula: see text]=[Formula: see text]3.34, respectively. Therefore, the results indicated that Vis–SWNIR spectroscopy is capable of intelligently detecting potassium concentration in fresh lettuce to benefit CKD patients around the world in maintaining and enhancing their health.


2020 ◽  
Vol 16 ◽  
Author(s):  
Linqi Liu ◽  
JInhua Luo ◽  
Chenxi Zhao ◽  
Bingxue Zhang ◽  
Wei Fan ◽  
...  

BACKGROUND: Measuring medicinal compounds to evaluate their quality and efficacy has been recognized as a useful approach in treatment. Rhubarb anthraquinones compounds (mainly including aloe-emodin, rhein, emodin, chrysophanol and physcion) are its main effective components as purgating drug. In the current Chinese Pharmacopoeia, the total anthraquinones content is designated as its quantitative quality and control index while the content of each compound has not been specified. METHODS: On the basis of forty rhubarb samples, the correlation models between the near infrared spectra and UPLC analysis data were constructed using support vector machine (SVM) and partial least square (PLS) methods according to Kennard and Stone algorithm for dividing the calibration/prediction datasets. Good models mean they have high correlation coefficients (R2) and low root mean squared error of prediction (RMSEP) values. RESULTS: The models constructed by SVM have much better performance than those by PLS methods. The SVM models have high R2 of 0.8951, 0.9738, 0.9849, 0.9779, 0.9411 and 0.9862 that correspond to aloe-emodin, rhein, emodin, chrysophanol, physcion and total anthraquinones contents, respectively. The corresponding RMSEPs are 0.3592, 0.4182, 0.4508, 0.7121, 0.8365 and 1.7910, respectively. 75% of the predicted results have relative differences being lower than 10%. As for rhein and total anthraquinones, all of the predicted results have relative differences being lower than 10%. CONCLUSION: The nonlinear models constructed by SVM showed good performances with predicted values close to the experimental values. This can perform the rapid determination of the main medicinal ingredients in rhubarb medicinal materials.


2021 ◽  
Vol 13 (4) ◽  
pp. 641
Author(s):  
Gopal Ramdas Mahajan ◽  
Bappa Das ◽  
Dayesh Murgaokar ◽  
Ittai Herrmann ◽  
Katja Berger ◽  
...  

Conventional methods of plant nutrient estimation for nutrient management need a huge number of leaf or tissue samples and extensive chemical analysis, which is time-consuming and expensive. Remote sensing is a viable tool to estimate the plant’s nutritional status to determine the appropriate amounts of fertilizer inputs. The aim of the study was to use remote sensing to characterize the foliar nutrient status of mango through the development of spectral indices, multivariate analysis, chemometrics, and machine learning modeling of the spectral data. A spectral database within the 350–1050 nm wavelength range of the leaf samples and leaf nutrients were analyzed for the development of spectral indices and multivariate model development. The normalized difference and ratio spectral indices and multivariate models–partial least square regression (PLSR), principal component regression, and support vector regression (SVR) were ineffective in predicting any of the leaf nutrients. An approach of using PLSR-combined machine learning models was found to be the best to predict most of the nutrients. Based on the independent validation performance and summed ranks, the best performing models were cubist (R2 ≥ 0.91, the ratio of performance to deviation (RPD) ≥ 3.3, and the ratio of performance to interquartile distance (RPIQ) ≥ 3.71) for nitrogen, phosphorus, potassium, and zinc, SVR (R2 ≥ 0.88, RPD ≥ 2.73, RPIQ ≥ 3.31) for calcium, iron, copper, boron, and elastic net (R2 ≥ 0.95, RPD ≥ 4.47, RPIQ ≥ 6.11) for magnesium and sulfur. The results of the study revealed the potential of using hyperspectral remote sensing data for non-destructive estimation of mango leaf macro- and micro-nutrients. The developed approach is suggested to be employed within operational retrieval workflows for precision management of mango orchard nutrients.


2021 ◽  
Vol 11 (2) ◽  
pp. 618
Author(s):  
Tanvir Tazul Islam ◽  
Md Sajid Ahmed ◽  
Md Hassanuzzaman ◽  
Syed Athar Bin Amir ◽  
Tanzilur Rahman

Diabetes is a chronic illness that affects millions of people worldwide and requires regular monitoring of a patient’s blood glucose level. Currently, blood glucose is monitored by a minimally invasive process where a small droplet of blood is extracted and passed to a glucometer—however, this process is uncomfortable for the patient. In this paper, a smartphone video-based noninvasive technique is proposed for the quantitative estimation of glucose levels in the blood. The videos are collected steadily from the tip of the subject’s finger using smartphone cameras and subsequently converted into a Photoplethysmography (PPG) signal. A Gaussian filter is applied on top of the Asymmetric Least Square (ALS) method to remove high-frequency noise, optical noise, and motion interference from the raw PPG signal. These preprocessed signals are then used for extracting signal features such as systolic and diastolic peaks, the time differences between consecutive peaks (DelT), first derivative, and second derivative peaks. Finally, the features are fed into Principal Component Regression (PCR), Partial Least Square Regression (PLS), Support Vector Regression (SVR) and Random Forest Regression (RFR) models for the prediction of glucose level. Out of the four statistical learning techniques used, the PLS model, when applied to an unbiased dataset, has the lowest standard error of prediction (SEP) at 17.02 mg/dL.


2018 ◽  
pp. 32-34 ◽  
Author(s):  
S. N. Gromova ◽  
P. I. Kostylev

The article presents the results of the conducted analysis of research works about the effect of size of flag leaves and awns on winter wheat productivity. The genetic potential of the variety, which can be realized on the basis of its biologic characteristics largely influences on its productivity. Productivity is a complex trait that is controlled by a complex genetic system closely connected with many factors of environment. The size and duration of assimilation surface are the most important components of biologic and agricultural yield of wheat. Many researchers showed that the amount and duration of photosynthesis by leaf surface are the main factors limiting productivity in the definite conditions of growing, and the size of leaf surface correlates with grain productivity. Photosynthetic parts of winter wheat include not only leaves, but also stems, heads, awns, etc. The conducted analysis of the literature showed that there is no consensus on the effect of flag leaves on wheat yield formation. Therefore it’s necessary to fulfill the study and evaluation of the part of flag leaves and awns in the formation of winter soft wheat productivity in the Rostov region.


Metabolites ◽  
2022 ◽  
Vol 12 (1) ◽  
pp. 36
Author(s):  
Khushman Taunk ◽  
Priscilla Porto-Figueira ◽  
Jorge A. M. Pereira ◽  
Ravindra Taware ◽  
Nattane Luíza da Costa ◽  
...  

The urinary volatomic profiling of Indian cohorts composed of 28 lung cancer (LC) patients and 27 healthy subjects (control group, CTRL) was established using headspace solid phase microextraction technique combined with gas chromatography mass spectrometry methodology as a powerful approach to identify urinary volatile organic metabolites (uVOMs) to discriminate among LC patients from CTRL. Overall, 147 VOMs of several chemistries were identified in the intervention groups—including naphthalene derivatives, phenols, and organosulphurs—augmented in the LC group. In contrast, benzene and terpenic derivatives were found to be more prevalent in the CTRL group. The volatomic data obtained were processed using advanced statistical analysis, namely partial least square discriminative analysis (PLS-DA), support vector machine (SVM), random forest (RF), and multilayer perceptron (MLP) methods. This resulted in the identification of nine uVOMs with a higher potential to discriminate LC patients from CTRL subjects. These were furan, o-cymene, furfural, linalool oxide, viridiflorene, 2-bromo-phenol, tricyclazole, 4-methyl-phenol, and 1-(4-hydroxy-3,5-di-tert-butylphenyl)-2-methyl-3-morpholinopropan-1-one. The metabolic pathway analysis of the data obtained identified several altered biochemical pathways in LC mainly affecting glycolysis/gluconeogenesis, pyruvate metabolism, and fatty acid biosynthesis. Moreover, acetate and octanoic, decanoic, and dodecanoic fatty acids were identified as the key metabolites responsible for such deregulation. Furthermore, studies involving larger cohorts of LC patients would allow us to consolidate the data obtained and challenge the potential of the uVOMs as candidate biomarkers for LC.


PLoS ONE ◽  
2021 ◽  
Vol 16 (10) ◽  
pp. e0257901
Author(s):  
Yanjing Bi ◽  
Chao Li ◽  
Yannick Benezeth ◽  
Fan Yang

Phoneme pronunciations are usually considered as basic skills for learning a foreign language. Practicing the pronunciations in a computer-assisted way is helpful in a self-directed or long-distance learning environment. Recent researches indicate that machine learning is a promising method to build high-performance computer-assisted pronunciation training modalities. Many data-driven classifying models, such as support vector machines, back-propagation networks, deep neural networks and convolutional neural networks, are increasingly widely used for it. Yet, the acoustic waveforms of phoneme are essentially modulated from the base vibrations of vocal cords, and this fact somehow makes the predictors collinear, distorting the classifying models. A commonly-used solution to address this issue is to suppressing the collinearity of predictors via partial least square regressing algorithm. It allows to obtain high-quality predictor weighting results via predictor relationship analysis. However, as a linear regressor, the classifiers of this type possess very simple topology structures, constraining the universality of the regressors. For this issue, this paper presents an heterogeneous phoneme recognition framework which can further benefit the phoneme pronunciation diagnostic tasks by combining the partial least square with support vector machines. A French phoneme data set containing 4830 samples is established for the evaluation experiments. The experiments of this paper demonstrates that the new method improves the accuracy performance of the phoneme classifiers by 0.21 − 8.47% comparing to state-of-the-arts with different data training data density.


Sensors ◽  
2019 ◽  
Vol 19 (14) ◽  
pp. 3161 ◽  
Author(s):  
Haizhu Pan ◽  
Zhongxin Chen ◽  
Allard de Wit ◽  
Jianqiang Ren

It is well known that timely crop growth monitoring and accurate crop yield estimation at a fine scale is of vital importance for agricultural monitoring and crop management. Crop growth models have been widely used for crop growth process description and yield prediction. In particular, the accurate simulation of important state variables, such as leaf area index (LAI) and root zone soil moisture (SM), is of great importance for yield estimation. Data assimilation is a useful tool that combines a crop model and external observations (often derived from remote sensing data) to improve the simulated crop state variables and consequently model outputs like crop total biomass, water use and grain yield. In spite of its effectiveness, applying data assimilation for monitoring crop growth at the regional scale in China remains challenging, due to the lack of high spatiotemporal resolution satellite data that can match the small field sizes which are typical for agriculture in China. With the accessibility of freely available images acquired by Sentinel satellites, it becomes possible to acquire data at high spatiotemporal resolution (10–30 m, 5–6 days), which offers attractive opportunities to characterize crop growth. In this study, we assimilated remotely sensed LAI and SM into the Word Food Studies (WOFOST) model to estimate winter wheat yield using an ensemble Kalman filter (EnKF) algorithm. The LAI was calculated from Sentinel-2 using a lookup table method, and the SM was calculated from Sentinel-1 and Sentinel-2 based on a change detection approach. Through validation with field data, the inverse error was 10% and 35% for LAI and SM, respectively. The open-loop wheat yield estimation, independent assimilations of LAI and SM, and a joint assimilation of LAI + SM were tested and validated using field measurement observation in the city of Hengshui, China, during the 2016–2017 winter wheat growing season. The results indicated that the accuracy of wheat yield simulated by WOFOST was significantly improved after joint assimilation at the field scale. Compared to the open-loop estimation, the yield root mean square error (RMSE) with field observations was decreased by 69 kg/ha for the LAI assimilation, 39 kg/ha for the SM assimilation and 167 kg/ha for the joint LAI + SM assimilation. Yield coefficients of determination (R2) of 0.41, 0.65, 0.50, and 0.76 and mean relative errors (MRE) of 4.87%, 4.32%, 4.45% and 3.17% were obtained for open-loop, LAI assimilation alone, SM assimilation alone and joint LAI + SM assimilation, respectively. The results suggest that LAI was the first-choice variable for crop data assimilation over SM, and when both LAI and SM satellite data are available, the joint data assimilation has a better performance because LAI and SM have interacting effects. Hence, joint assimilation of LAI and SM from Sentinel-1 and Sentinel-2 at a 20 m resolution into the WOFOST provides a robust method to improve crop yield estimations. However, there is still bias between the key soil moisture in the root zone and the Sentinel-1 C band retrieved SM, especially when the vegetation cover is high. By active and passive microwave data fusion, it may be possible to offer a higher accuracy SM for crop yield prediction.


2020 ◽  
Author(s):  
Nikolaos-Christos Vavlas ◽  
Toby Waine ◽  
Jeroen Meersmans ◽  
Goetz Richter

<p>Synthetic Aperture Radar (SAR) is sensitive to the surface structure as well as dielectric properties, so can be used to quantify the canopy characteristics and surface moisture. High temporal frequency SAR backscatter data are useful in terms of quantifying crop phenological development, growth and yield formation. The aim of this research is to identify the growth dynamics of winter wheat from SAR at field scale, validated using farm sites with different productivity between two years (2018-2019). We identify and explore the parameters which characterize crop performance from SAR temporal curves and use these to improve and automate the monitoring of wheat fields. Our novel methodology includes the extraction of crop indicators using the VH/VV ratio temporal curve from Sentinel-1. Sigmoid curve fitting is used to simulate the VH/VV response and the extracted parameters are related to the field development. The results show that specific indicators, such as the duration of the high vegetation (stem elongation to dough development) as well as the timing of the booting stage of wheat significantly correlate with the final yield. Other indicators can provide information about the canopy characteristics of wheat (e.g. above ground biomass and plant water content). The combination of selected indicators can provide a more robust analysis of the fields. These results demonstrate the potential of SAR to remotely quantify yield without using any management data from the farm.</p>


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