scholarly journals CONVENTIONAL AND MOLECULAR STUDY OF Babesia spp. OF NATURAL INFECTION IN DRAGGING HORSES AT SOME AREAS OF BAGHDAD CITY, IRAQ

2019 ◽  
Vol 50 (3) ◽  
Author(s):  
Faraj & et al.
Keyword(s):  
Natural Infection ◽  
Age Groups ◽  
Molecular Study ◽  
High Rate ◽  
Theileria Equi ◽  
Phylogenic Tree ◽  
Significant Difference ◽  
Pcr Products ◽  
Pcr Method ◽  
First Time

 The present study was planned to investigate equine babesiosis in dragging horses in Baghdad city, Iraq by using microscopical and molecular (PCR) techniques. 150 blood samples of horses examined for Theileria equi and Babesia caballi. 16.66% (25/150) were positive by microscopic examination. No significant difference was observed in infection rates between male and female horses and among different age groups. The result showed that PCR method has high rate of infection36% (9/25). Nine positive PCR products were sequenced and deposited in Genebank data base for first time in Iraq, phylogenic analysis demonstrated that 5 sequences belongs to T. equi (MK350319, MK346272, MK346273, MK346274 and MK36275), while 4 sequence (MK346276, MK346277, MK346278 and MK350318) belongs to B. caballi, and mounted a low genetic variation 0.035 and 0.05 respectively, among other comparison isolates. In conclusion PCR technique followed by phylogenic tree analysis a reliable methods for epidemiological, diagnosis and identification of genetic variants studies.

scholarly journals Virological and Epidemiological Features of Norovirus Infections in Brazil, 2017–2018

Viruses ◽  
2021 ◽  
Vol 13 (9) ◽  
pp. 1724
Author(s):  
Sylvia Kahwage Sarmento ◽  
Juliana da Silva Ribeiro de Andrade ◽  
Marize Pereira Miagostovich ◽  
Tulio Machado Fumian
Keyword(s):  
National Level ◽  
Age Groups ◽  
Median Viral Load ◽  
Molecular Surveillance ◽  
Predominant Genotype ◽  
Significant Difference ◽  
Surveillance Programs ◽  
Partial Rdrp ◽  
Stool Samples ◽  
First Time

Noroviruses are considered an important cause of acute gastroenteritis (AGE) across all age groups. Here, we investigated the incidence of norovirus, genotypes circulation, and norovirus shedding in AGE stool samples from outpatients in Brazil. During a two-year period, 1546 AGE stool samples from ten Brazilian states were analyzed by RT-qPCR to detect and quantify GI and GII noroviruses. Positive samples were genotyped by dual sequencing using the ORF1/2 junction region. Overall, we detected norovirus in 32.1% of samples, with a massive predominance of GII viruses (89.1%). We also observed a significant difference between the median viral load of norovirus GI (3.4×105 GC/g of stool) and GII (1.9×107 GC/g). The most affected age group was children aged between 6 and 24 m old, and norovirus infection was detected throughout the year without marked seasonality. Phylogenetic analysis of partial RdRp and VP1 regions identified six and 11 genotype combinations of GI and GII, respectively. GII.4 Sydney[P16] was by far the predominant genotype (47.6%), followed by GII.2[P16], GII.4 Sydney[P31], and GII.6[P7]. We detected, for the first time in Brazil, the intergenogroup recombinant genotype GIX.1[GII.P15]. Our study contributes to the knowledge of norovirus genotypes circulation at the national level, reinforcing the importance of molecular surveillance programs for future vaccine designs.

scholarly journals Distribution and Prevalence of High-Risk Human Papillomavirus Genotypes in Cervical Specimens

2020 ◽  
Vol 25 (3) ◽  
pp. 325-331
Author(s):  
Erkan Özmen ◽  
Ülkü Altoparlak ◽  
Muhammet Hamidullah Uyanık ◽  
Abdulkadir Gülen
Keyword(s):  
Cervical Cancer ◽  
Human Papillomavirus ◽  
Age Groups ◽  
Hpv Infection ◽  
High Rate ◽  
Genotype Distribution ◽  
Hpv Dna ◽  
Hpv Test ◽  
Significant Difference ◽  
Hpv Types

Introduction: Human papillomavirus (HPV) is frequently a sexually transmitted virus and can cause cervical cancer in women. Cervical cancer is the second most common type of cancer among the developing countries. In this study, cervical HPV DNA positivity and genotype distributions were investigated in female patients living in our region and the results were compared with different studies. Materials and Methods: Between 1 July, 2017 and 1 March, 2019, 433 cervical swabs were sent to Ataturk University, Medical Faculty Hospital, Medical Microbiology Laboratory due to suspicion of HPV. Swab samples were evaluated for HPV virus using molecular (Polymerase Chain Reaction-PCR) methods. For this purpose, Xpert HPV Test (Cepheid, Inc, Sunnyvale, CA) was used to identify HPV types 16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 66 and 68 t in a single sample. Results: Mean age of the patients ranged from 20 to 69 years, with a mean of 39.8 years (± 10.0). Positivity was detected in 62 of the 433 patients. Mean age of the positive patients was 40.2 years (± 11.3). When the positive patients were examined in terms of HPV types, the presence of HPV 16 was observed with a rate of 25.6%, while the HPV 18/45 types were found to be 9.0% in total. When patients were evaluated according to age groups, HPV DNA positivity was highest in the 25-34 age group with 38.7%. In our statistical study, there was no significant difference in HPV DNA positivity rate between the ages of 35 and under 35 years. Conclusion: This study demonstrates the prevalence and viral genotype distribution of HPV infection in women in Erzurum region. HPV type 16 is seen with a high rate in our region.

scholarly journals ID: 1088 Experimental culturing of chick embryo in shell-less culture system – the first research in Vietnam

2017 ◽  
Vol 4 (S) ◽  
pp. 176
Author(s):  
Quy Xuan Nguyen ◽  
Long Thanh Dang
Keyword(s):  
Chick Embryo ◽  
Traditional Method ◽  
Culture System ◽  
Lethal Effect ◽  
Calcium Lactate ◽  
High Rate ◽  
Chick Embryos ◽  
Ideal Model ◽  
Significant Difference ◽  
First Time

Chick embryo is an ideal model with numerous applications in biomedical research. Among a variety of methods have been carried out for culturing chick embryos, shell-less culture system has a large number of advantages on accessibility, observation and manipulation. In this study, chick embryos were transferred to the shell-less culture system and the development of the chick embryos were assessed. Correlation between the diameter of sinus terminalis on the surface of yolk sac and viability of the embryos would be evaluated. In addition, calcium lactate was added to the culture system in order to find out the optimal amount. After the experiments, results showed that there was no difference between embryos in shell-less culture system and traditional method during incubation period. Secondly, the proportion of live chick embryos until embryonic day 17 reached the highest rate at 87,5% when the diameter of sinus terminalis was between 16 and 21 mm. At last, there was no significant difference between the group with 250 mg calcium lactate supplemented as compared to no supplemented group. Calcium lactate had a lethal effect on chick embryos when the supplemented content was 550 mg. In conclusion, the shell-less culture system could be able to allow the survival of chick embryos until day 21, with high rate in day 17. Besides, this has been the very first time the shell-less culture system was performed in Vietnam.

scholarly journals Detection of Brucella sp. and Leptospira sp. in dogs using conventional polymerase chain reaction

2014 ◽  
Vol 58 (4) ◽  
pp. 527-531
Author(s):  
Faham Khamesipour ◽  
Abbas Doosti ◽  
Mohsen Fard Emadi ◽  
Babafela Awosile
Keyword(s):  
Polymerase Chain Reaction ◽  
Age Groups ◽  
Conventional Polymerase Chain Reaction ◽  
Chain Reaction ◽  
Blood Samples ◽  
Stray Dogs ◽  
Supplementary Method ◽  
Significant Difference ◽  
Polymerase Chain ◽  
First Time

Abstract The study was conducted to detect Brucella sp. and Leptospira sp. in blood samples of dogs in Isfahan and Shahrekord province in Iran. A total of 94 blood samples were collected from dogs of different breed, age, sex, and dogs’ type (stray or nonstray). The samples were examined using conventional polymerase chain reaction (PCR). Fourteen (14.89%) dogs were positive for Brucella sp. and 18 (19.15%). dogs for Leptospira sp. There were no significant differences between the prevalence of the pathogens, provinces, sex, and age groups (P > 0.05). However, there was a statistically significant difference in prevalence of Brucella sp. and Leptospira sp. between stray and non-stray dogs (P < 0.0001; χ2 = 30.3767). The study also demonstrated that PCR was successfully used for the first time in Iran for the detection of Brucella sp. and Leptospira sp. in blood samples of dogs. Therefore, we recommend the PCR as a supplementary method with other commonly recognised methods (e.g. serological methods) for the diagnosis of subclinical infections with the microorganisms. Strict measures for the control of stray dogs are also highly recommended.

scholarly journals Prevalence of diabetes in the adult population of Novosibirsk

2017 ◽  
Vol 20 (5) ◽  
pp. 329-334 ◽  
Author(s):  
Svetlana V. Mustafina ◽  
Oksana D. Rymar ◽  
Sofiya K. Malyutina ◽  
Diana V. Denisova ◽  
Liliya V. Shcherbakova ◽  
...  
Keyword(s):  
Adult Population ◽  
Population Sample ◽  
Age Groups ◽  
Epidemiological Studies ◽  
High Rate ◽  
Age Group ◽  
Men And Women ◽  
Younger Age ◽  
Significant Difference ◽  
High Prevalence

Aims. To estimate the prevalence of type 2 diabetes mellitus (T2DM) in different age groups of the adult population of Novosibirsk, according to epidemiological studies in 20032005 and 20132016. Methods. We examined a representative population sample (assessed in 20032005) of men and women aged 4569 years in two administrative districts of Novosibirsk, as a part of the international HAPIEE project. According to the tables of random numbers, representative samples of men and women aged 4569 years were formed, to which letters were sent, inviting them to pass for examination. During 20132016, a second population survey was conducted on a random representative sample of a population of 2544-year-olds of both sexes. Participants were residents of one of the districts of Novosibirsk. T2DM and impaired fasting glucose (IFG) were diagnosed using fasting plasma glucose (FPG) levels (diabetes: FPG 7.0 mmol/l; IFG: FPG 6.16.9 mmol/l). Results. The prevalence of T2DM among residents aged 4569 years was 11.3%, and overall, no significant difference in prevalence was found between females and males (11.3% vs. 11.0%). However, the overall prevalence of T2DM among residents aged 2544 years was 2.2%, and prevalence was higher in men (3.5%) than in women (1.1%), p 0.05. High prevalence of IFG was found in the 4569 age group (18.2%, in 20032005), and in the younger age group of 2544 years (21.6%, in 20132016). The high rate among young individuals is particularly alarming. Less than one half (4.8 out of 11.3%) of participants aged 4569 tested positive for T2DM, and only one in the age group 2544 years knew he/she had diabetes. This indicates a lack of knowledge among Siberians about their problem with diabetes. Conclusion. Approximately one in five adults had IFG. Among the adult population aged 4569 (in 20032005), 18.2% had IFG and 11.3% had T2DM. In individuals aged 2544 years in 20132016, IFG was observed in 21.6%, and 2.2% had T2DM (p0.05).

scholarly journals A Simple PCR Method for Rapid Genotype Analysis ofMycobacterium ulcerans

2000 ◽  
Vol 38 (4) ◽  
pp. 1482-1487 ◽  
Author(s):  
Timothy Stinear ◽  
John K. Davies ◽  
Grant A. Jenkin ◽  
Françoise Portaels ◽  
Bruce C. Ross ◽  
...  
Keyword(s):  
Pcr Amplification ◽  
Geographic Region ◽  
Mycobacterium Ulcerans ◽  
Geographic Origins ◽  
Pcr Products ◽  
Total Dna ◽  
Pcr Method ◽  
Clonal Population Structure ◽  
Tissue Specimens ◽  
First Time

Two high-copy-number insertion sequences, IS2404 and IS2606, were recently identified in Mycobacterium ulcerans and were shown by Southern hybridization to possess restriction fragment length polymorphism between strains from different geographic origins. We have designed a simple genotyping method that captures these differences by PCR amplification of the region between adjacent copies of IS2404 and IS2606. We have called this system 2426 PCR. The method is rapid, reproducible, sensitive, and specific for M. ulcerans, and it has confirmed previous studies suggesting a clonal population structure ofM. ulcerans within a geographic region. M. ulcerans isolates from Australia, Papua New Guinea, Malaysia, Surinam, Mexico, Japan, China, and several countries in Africa were easily differentiated based on an array of 4 to 14 PCR products ranging in size from 200 to 900 bp. Numerical analysis of the banding patterns suggested a close evolutionary link between M. ulceransisolates from Africa and southeast Asia. The application of 2426 PCR to total DNA, extracted directly from M. ulcerans-infected tissue specimens without culture, demonstrated the sensitivity and specificity of this method and confirmed for the first time that both animal and human isolates from areas of endemicity in southeast Australia have the same genotype.

First Molecular Study of Caprine Trypanosoma evansi Infection in Central India

2021 ◽  
Author(s):  
V. Agrawal ◽  
G. Das ◽  
B.R. Maharana ◽  
A.K. Jayraw ◽  
M. Shakya ◽  
...  
Keyword(s):  
Water Solution ◽  
Natural Infection ◽  
Central India ◽  
Molecular Study ◽  
Trypanosoma Evansi ◽  
Buffy Coat ◽  
Diminazene Aceturate ◽  
Source Of Infection ◽  
Polymerase Chain ◽  
First Time

Background: Diagnosis of Trypanosoma evansi among goat in field is still challenging due to scarce information on clinical manifestation and non availability of rapid reliable diagnostics. Molecular test such as PCR employed to diagnose the T. evansi with accuracy in both blood and tissues. Limited reports are available from different parts of the country on natural infection of T. evansi in goat. Mainly subclinical form of disease occurred in goats owing to low level of parasitaemia of T. evansi. Methods: A Jamunapari goat aged 1.5 years and weighing ~25 Kg was suffering from circling movement, pale conjunctiva and anorexia and was found positive for T. evansi by buffy coat examination and polymerase chain reaction. Diminazene aceturate was given intramuscularly as 7% water solution at a dose of 3.5 mg/kg b.wt. After 3 days, blood smear and buffy coat were negative for T. evansi and no band was found after running the product on 1.7% agarose gel stained with ethidium bromide. Result: The present study reveals first time report on caprine trypanosomosis from central India by conventional and PCR technique and placed on record. Hence, the goat should also be taken into consideration for control of trypanosomosis as goats are an important source of infection to other animals due to their reservoir nature for T. evansi.

scholarly journals First records of tick-borne pathogens in populations of the taiga tick Ixodes persulcatus in Sweden

2019 ◽  
Vol 12 (1) ◽  
Author(s):  
Thomas G. T. Jaenson ◽  
Peter Wilhelmsson
Keyword(s):  
Ixodes Persulcatus ◽  
Borrelia Miyamotoi ◽  
Northern Sweden ◽  
Human Pathogens ◽  
Taiga Tick ◽  
Significant Difference ◽  
Infected Adult ◽  
Pcr Products ◽  
Tick Vectors ◽  
First Time

Abstract Background The common tick Ixodes ricinus and the taiga tick I. persulcatus are the main tick vectors of Borrelia spirochaetes, TBE virus (TBEV) and of several other zoonotic pathogens in the western and eastern areas, respectively of the Palaearctic region. Recently, populations of the taiga tick were, for the first time, detected in northern Sweden. This prompted us to investigate if they harbour human pathogens. Methods A total of 276 I. persulcatus ticks (136 males, 126 females and 14 nymphs) and one I. ricinus nymph was collected by the cloth-dragging method in northern Sweden in July–August 2015 and May–July 2016. In addition, 8 males and 10 females of I. persulcatus were collected from two dogs (16 and 2 ticks, respectively) in two of the localities. All ticks were microscopically and molecularly identified to developmental stage and species and screened for B. burgdorferi (sensu lato), B. miyamotoi, Anaplasma phagocytophilum, Rickettsia spp., Neoehrlichia mikurensis, Babesia spp. and TBEV using real-time PCR followed by species identification by sequencing the PCR-products of conventional PCR assays. Results Of the ticks collected by the cloth-dragging method, 55% (152/277) were positive for Borrelia. There was no significant difference between the proportions of Borrelia-infected nymphs (33%, 5/15) and Borrelia-infected adult ticks (56%, 147/262), and no significant difference between the proportions of Borrelia-infected males (54%, 74/136) and Borrelia-infected females (58%, 73/126). Three different Borrelia species were identified. Borrelia afzelii was the predominant species and detected in 46% of all Borrelia-infected ticks followed by B. garinii, 35%, B. valaisiana, 1%, and mixed infections of different Borrelia species, 1%; 17% of all Borrelia-infections were untypeable. One I. persulcatus female contained Rickettsia helvetica, and one nymph contained Rickettsia sp. Of the 277 ticks analysed, all were negative for A. phagocytophilum, Babesia spp., Borrelia miyamotoi, N. mikurensis and TBEV. The ticks collected from the two dogs were negative for all pathogens examined except for Borrelia spp., that was detected in 5 out of 16 ticks removed from one of the dogs. Conclusions To our knowledge, this is the first time that I. persulcatus from Sweden has been analysed for the presence of tick-borne pathogens. The examined tick populations had a low diversity of tick-borne pathogens but a high prevalence of B. burgdorferi (s.l.).

First molecular detection and phylogenetic analysis of Neospora caninum DNA from naturally infected goats in Northwest Tunisia

2018 ◽  
Vol 63 (4) ◽  
pp. 709-714 ◽  
Author(s):  
Yosra Amdouni ◽  
Safa Amairia ◽  
Yousra Said ◽  
Sofia Awadi ◽  
Mohamed Gharbi
Keyword(s):  
Neospora Caninum ◽  
Phylogenetic Analyses ◽  
Natural Infection ◽  
Protozoan Parasite ◽  
Molecular Study ◽  
Economic Losses ◽  
North African ◽  
Pcr Products ◽  
Meat Samples ◽  
Intracellular Protozoan Parasite

Abstract Neospora caninum is an intracellular protozoan parasite from the phylum Apicomplexa, mainly associated with abortions and causing enormous economic losses. We aimed, by the present study, to estimate the molecular prevalence and phylogenetic analyses of natural infection with N. caninum in Tunisian goats. A total number of 121 meat samples were collected from slaughtered goats in the regional slaughterhouse of Béja (Northwest Tunisia) and tested from N. caninum ITS1 gene using PCR followed by sequencing of PCR products. Phylogenetic analyses were used to identify this parasite infecting goats in Nortwest Tunisia. The overall molecular prevalence was 19% (23/121). The highest molecular prevalence of N. caninum was observed in goats aged between 2 and 4 years (31.9 ± 13.27%) (P = 0.004). There was no difference in the overall molecular prevalence of N. caninum according to both localities and animal breeds. Comparison of the partial sequences of the ITS1 gene revealed 99–100% similarity with GenBank sequences. A high similarity with all the blasted genotypes was reported for N. caninum sequences. This is the first molecular study and genetic characterisation of N. caninum in North African goats.

scholarly journals Prevalence of Urinary Schistosomiasis among primary school children in three rural communities of Kano State, Nigeria

2019 ◽  
Vol 1 ◽  
pp. 13-17
Author(s):  
R S Duwa ◽  
A Sanusi ◽  
C Ogbunachara ◽  
F Okiemute
Keyword(s):  
Rural Communities ◽  
Infection Rate ◽  
Primary Schools ◽  
Age Groups ◽  
Primary School Children ◽  
Age Group ◽  
Urinary Schistosomiasis ◽  
Significant Difference ◽  
Group 5 ◽  
First Time

This study was carried out among pupils of three primary schools in Dawakin Kudu Local Government Area of Kano State, Nigeria between May and July, 2018. Three hundred and twenty (320) pupils were examined for the presence of schistosome eggs in urine. Out of the 320 pupils examined only 34 (10.6%) were found to be infected with S haematobium. Males have higher prevalence of 26 (12.1%) compared to females 8(7.6%). The age group 8-10 years has the highest infection rate 13 (15.85%) while the age group 5-7 the least with 1(4.6%). Although sample sizes were not equal, among the communities Fallau with 65 has the highest infection rate with a prevalence of 11(16.9%), Gano with 135 has 14 (10.4%) followed by Danbagina, 120 with a prevalence of 9(7.5%). All infections were light (<50eggs/10ml of urine).There was a significant difference in infection among the different villages examined χ2= 8.94, df = 2, p<0.05.Statistically there was also a significant difference in infection among the different age groups χ2= 2.9356, df = 3, p<0.05. It was concluded that S. haematobium is present in these study areas and unless health education on the mode of transmission of the disease, provision of safe and adequate water supply and sanitation which will help in curtailing the infection is provided, there is the likelihood of a rise in infection rate. This is the first time this type of study was carried out in these study areas.

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