Diversity and antimicrobial resistance of Salmonella enterica serovars in surface river water and sediment

This study aimed to evaluate the contamination by Salmonella sp. in the Capinzal River, to determine the prevalent serovars, patterns of antimicrobial resistance, and the genetic relationships between the serovars identified. A total of 108 samples were collected from 2016 to 2018. The isolation of Salmonella spp. was conducted according to International Organization for Standardization (ISO) standards. The antimicrobial resistance profile of the Salmonella isolates was evaluated, and isolates were selected for serotyping and verification of genetic similarity using the Pulsed-Field Gel Electrophoresis (PFGE) Technique. Of the 108 samples collected, 35 (32.4%) were positive for Salmonella; 17.2% of the isolates were from the rural area; and 88.6% were from the urban area. Salmonella was isolated from all collect points along the river, with a higher incidence at the beginning of the urban area, indicating that contamination starts in the rural area and intensifies in the urban area of the city. A percentage of 35.1% of the Salmonella isolates were resistant to at least two antibiotics, while 18.9% were considered multidrug-resistant (resistant to at least two antibiotics of different classes). Seven serovars were distinguished from the serotyped isolates, with a prevalence rate of 23.5% for S. Infantis, S. Orion, and S. Javiana; 11.8% for S. Senfterberg, and 5.9% for S. Montevideo, S. Heidelberg, and S. enterica subsp. enterica (O: 6.8). The variability in specific restriction sites generated by PFGE resulted in 10 pulsotypes, separating mainly different serotypes.

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Antimicrobial Resistance and Presence of Class 1 Integrons Among Different Serotypes of Salmonella spp. Recovered From Children with Diarrhea in Tehran, Iran

Infectious Disorders - Drug Targets ◽

10.2174/1871526519666190130171020 ◽

2020 ◽

Vol 20 (2) ◽

pp. 160-166

Author(s):

Seyedeh Hanieh Eshaghi Zadeh ◽

Hossein Fahimi ◽

Fatemeh Fardsanei ◽

Mohammad Mehdi Soltan Dallal

Keyword(s):

Antibiotic Resistance ◽

Antimicrobial Resistance ◽

Multidrug Resistant ◽

Salmonella Spp ◽

Class 1 Integron ◽

Class 1 Integrons ◽

Food Borne ◽

Class 1 ◽

Resistance Patterns ◽

C 30

Background: Salmonellosis is a major food-borne disease worldwide. The increasing prevalence of antimicrobial resistance among food-borne pathogens such as Salmonella spp. is concerning. Objective: The main objective of this study is to identify class 1 integron genes and to determine antibiotic resistance patterns among Salmonella isolates from children with diarrhea. Methods: A total of 30 Salmonella isolates were recovered from children with diarrhea. The isolates were characterized for antimicrobial susceptibility and screened for the presence of class 1 integron genes (i.e. intI1, sulI1, and qacEΔ1). Results: The most prevalent serotype was Enteritidis 36.7%, followed by Paratyphi C (30%), and Typhimurium (16.7%). The highest rates of antibiotic resistance were obtained for nalidixic acid (53.3%), followed by streptomycin (40%), and tetracycline (36.7%). Regarding class 1 integrons, 36.7%, 26.7%, and 33.3% of the isolates carried intI1, SulI, and qacEΔ1, respectively, most of which (81.8%) were multidrug-resistant (MDR). Statistical analysis revealed that the presence of class 1 integron was significantly associated with resistance to streptomycin and tetracycline (p = 0.042). However, there was no association between class 1 integron and other antibiotics used in this study (p > 0.05). Conclusion: The high frequency of integron class 1 gene in MDR Salmonella strains indicates that these mobile genetic elements are versatile among different Salmonella serotypes, and associated with reduced susceptibility to many antimicrobials.

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Multidrug Antimicrobial Resistance and Molecular Detection of mcr-1 Gene in Salmonella Species Isolated from Chicken

Animals ◽

10.3390/ani11010206 ◽

2021 ◽

Vol 11 (1) ◽

pp. 206

Author(s):

Md Bashir Uddin ◽

S.M. Bayejed Hossain ◽

Mahmudul Hasan ◽

Mohammad Nurul Alam ◽

Mita Debnath ◽

...

Keyword(s):

Functional Analysis ◽

Antimicrobial Resistance ◽

In Silico ◽

Salmonella Enterica ◽

Molecular Mechanisms ◽

Antimicrobial Agents ◽

Genetic Relationships ◽

Evolutionary Relationship ◽

Salmonella Spp ◽

Gram Negative

Colistin (polymyxin E) is widely used in animal and human medicine and is increasingly used as one of the last-resort antibiotics against Gram-negative bacilli. Due to the increased use of colistin in treating infections caused by multidrug-resistant Gram-negative bacteria, resistance to this antibiotic ought to be monitored. The study was undertaken to elucidate the molecular mechanisms, genetic relationships and phenotype correlations of colistin-resistant isolates. Here, we report the detection of the mcr-1 gene in chicken-associated Salmonella isolates in Bangladesh and its in-silico functional analysis. Out of 100 samples, 82 Salmonella spp. were isolated from chicken specimens (liver, intestine). Phenotypic disc diffusion and minimum inhibitory concentration (MIC) assay using different antimicrobial agents were performed. Salmonella isolates were characterized using PCR methods targeting genus-specific invA and mcr-1 genes with validation for the functional analysis. The majority of the tested Salmonella isolates were found resistant to colistin (92.68%), ciprofloxacin (73.17%), tigecycline (62.20%) and trimethoprim/sulfamethoxazole (60.98%). When screened using PCR, five out of ten Salmonella isolates were found to carry the mcr-1 gene. One isolate was confirmed for Salmonella enterica subsp. enterica serovar Enteritidis, and other four isolates were confirmed for Salmonella enterica subsp. enterica serovar Typhimurium. Sequencing and phylogenetic analysis revealed a divergent evolutionary relationship between the catalytic domain of Neisseria meningitidis lipooligosaccharide phosphoethanolamine transferase A (LptA) and MCR proteins, rendering them resistant to colistin. Three-dimensional homology structural analysis of MCR-1 proteins and molecular docking interactions suggested that MCR-1 and LptA share a similar substrate binding cavity, which could be validated for the functional analysis. The comprehensive molecular and in-silico analyses of the colistin resistance mcr-1 gene of Salmonella spp. of chicken origin in the present study highlight the importance of continued monitoring and surveillance for antimicrobial resistance among pathogens in food chain animals.

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The urban and rural capybaras (Hydrochoerus hydrochaeris) as reservoir of Salmonella in the western Amazon, Brazil

Pesquisa Veterinária Brasileira ◽

10.1590/1678-5150-pvb-5761 ◽

2019 ◽

Vol 39 (1) ◽

pp. 66-69 ◽

Cited By ~ 2

Author(s):

Itacir O. Farikoski ◽

Luciana S. Medeiros ◽

Yuri K. Carvalho ◽

David A. Ashford ◽

Eduardo E. S. Figueiredo ◽

...

Keyword(s):

Urban Area ◽

Rural Area ◽

Salmonella Spp ◽

Convenience Sample ◽

Enrichment Broth ◽

Fecal Samples ◽

Zoonotic Infections ◽

Hydrochoerus Hydrochaeris ◽

Pcr Targeting

ABSTRACT: The capybara (Hydrochoerus hydrochaeris) is the largest rodent in the world. In the state of Acre, Brazil, populations of capybaras have been increasing significantly. The role of capybaras in the transmission of certain bacterial zoonotic infections is not well understood, including bacteria of the genus Salmonella. Salmonella spp. generally cause enteritis or septicemia in mammals, however many mammalian species can carry the bacteria asymptomatically and shed it in their feces. To better understand the possible role of capybaras as reservoirs of Salmonella spp., we conducted a study of Salmonella within fecal samples from capybara in Acre. In a convenience sample, 54 capybaras from two urban and two rural areas of Acre were captured and kept for three to four days for sampling. None of the animals were symptomatic of any intestinal illness. Three separate fecal samples were collected from each animal, during their stays in captivity. Each sample was cultured for the presence of Salmonella spp. at the bacteriology laboratory of the Veterinary College of the Federal University of Acre. Samples were seeded in tetrationate pre-enrichment broth and in pre-enrichment broth peptone. After a 24 hour of incubation all samples were streaked on MacConkey Agar (MC) and Salmonella-Shigella Agar (SS). Suggestive colonies were submitted to biochemical analysis. Salmonella compatible colonies according to biochemical profile were submitted to serotyping (Sorokit for Salmonella - Probac do Brasil). In addition, the first sample from each of the 54 capybara was tested for Salmonella spp. using PCR targeting gene hilA. Eight (5%) of the 162 samples examined by bacterial culture were positive for Salmonella spp., while four (7%) of the 54 examined by PCR were positive. From the eight positive animals on culture, five were from urban area and three from rural area. On PCR, only one positive animal was from urban area and four were from rural area. Overall, by either test, one of the 54 animals was positive. All samples were collected in free - living animals with no apparent clinical signs of salmonellosis, indicating the potential of capybara as reservoir on this ecosystem.

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Characterization of Multidrug Resistance Patterns of Emerging Salmonella enterica Serovar Rissen along the Food Chain in China

Antibiotics ◽

10.3390/antibiotics9100660 ◽

2020 ◽

Vol 9 (10) ◽

pp. 660

Author(s):

Xuebin Xu ◽

Silpak Biswas ◽

Guimin Gu ◽

Mohammed Elbediwi ◽

Yan Li ◽

...

Keyword(s):

Antimicrobial Resistance ◽

Foodborne Pathogens ◽

Food Chain ◽

Salmonella Enterica ◽

Antimicrobial Agents ◽

Animal Husbandry ◽

Multidrug Resistant ◽

Salmonella Spp ◽

Broth Microdilution Method ◽

Resistance Patterns

Salmonella spp. are recognized as important foodborne pathogens globally. Salmonella enterica serovar Rissen is one of the important Salmonella serovars linked with swine products in numerous countries and can transmit to humans by food chain contamination. Worldwide emerging S. Rissen is considered as one of the most common pathogens to cause human salmonellosis. The objective of this study was to determine the antimicrobial resistance properties and patterns of Salmonella Rissen isolates obtained from humans, animals, animal-derived food products, and the environment in China. Between 2016 and 2019, a total of 311 S. Rissen isolates from different provinces or province-level cities in China were included here. Bacterial isolates were characterized by serotyping and antimicrobial susceptibility testing. Minimum inhibitory concentration (MIC) values of 14 clinically relevant antimicrobials were obtained by broth microdilution method. S. Rissen isolates from humans were found dominant (67%; 208/311). S. Rissen isolates obtained from human patients were mostly found with diarrhea. Other S. Rissen isolates were acquired from food (22%; 69/311), animals (8%; 25/311), and the environment (3%; 9/311). Most of the isolates were resistant to tetracycline, trimethoprim-sulfamethoxazole, chloramphenicol, streptomycin, sulfisoxazole, and ampicillin. The S. Rissen isolates showed susceptibility against ceftriaxone, ceftiofur, gentamicin, nalidixic acid, ciprofloxacin, and azithromycin. In total, 92% of the S. Rissen isolates were multidrug-resistant and ASSuT (27%), ACT (25%), ACSSuT (22%), ACSSuTAmc (11%), and ACSSuTFox (7%) patterns were among the most prevalent antibiotic resistance patterns found in this study. The widespread dissemination of antimicrobial resistance could have emerged from misuse of antimicrobial agents in animal husbandry in China. These findings could be useful for rational antimicrobial usage against Salmonella Rissen infections.

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Hybrid Assembly from a Pathogenic Methicillin- and Multidrug-Resistant Staphylococcus pseudintermedius Strain Isolated from a Case of Canine Otitis in Spain

Microbiology Resource Announcements ◽

10.1128/mra.01121-19 ◽

2020 ◽

Vol 9 (1) ◽

Cited By ~ 1

Author(s):

Joaquim Viñes ◽

Anna Cuscó ◽

Olga Francino

Keyword(s):

Antimicrobial Resistance ◽

Genome Assembly ◽

Hybrid Approach ◽

Multidrug Resistant ◽

Nanopore Sequencing ◽

Hybrid Assembly ◽

Staphylococcus Pseudintermedius ◽

Content Type ◽

Antimicrobial Resistance Profile ◽

Disk Diffusion Testing

Here we report the genome assembly, using a hybrid approach with Illumina and Nanopore sequencing, of a pathogenic Staphylococcus pseudintermedius strain isolated from a case of canine otitis. Genome assembly confirmed the antimicrobial resistance profile (disk diffusion testing) with specific genes and mutations.

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Molecular detection of biofilm, virulence and antimicrobial resistance associated genes of Salmonella serovars isolated from pig and chicken of Mizoram, India

Indian Journal of Animal Research ◽

10.18805/ijar.b-3817 ◽

2019 ◽

Author(s):

S. Chakraborty ◽

P. Roychoudhury ◽

I. Samanta ◽

P. K. Subudhi ◽

Lalhruaipuii Lalhruaipuii ◽

...

Keyword(s):

Antimicrobial Resistance ◽

Virulence Genes ◽

Antimicrobial Agents ◽

Virulence Gene ◽

Microtiter Plate ◽

Multidrug Resistant ◽

Salmonella Spp ◽

Microtiter Plate Assay ◽

Antimicrobial Sensitivity ◽

Salmonella Infections

Salmonella has emerged as one of the most important food-borne pathogens for humans as well as animals and the ability of biofilm formation by these bacteria has further aided their survival in unfavorable environment. Characterization of these biofilm producing bacteria isolated from pigs and chicken may lead to formulation of strategies for prevention and control of Salmonella infections. Therefore, the present study was conducted to isolate Salmonella from pigs and poultry of Mizoram, determine their biofilm producing ability by phenotypic and genotypic methods along with their virulence and antimicrobial resistance properties. A total of 15 Salmonella spp. (pig=9, poultry=6) was isolated from 100 faecal samples from pigs and 50 cloacal swabs from poultry and biofilm producing ability of the isolates was determined by microtiter plate assay. A total of 10 (66.67%) isolates were found to be biofilm producer. All the biofilm producing bacterial isolates were investigated for antimicrobial sensitivity and distribution of selected biofilm associated genes (csgA, csgD and adrA), virulence genes (invA, stn and sefA) and antimicrobial resistance (AMR) genes (blaTEM, blaSHV and blaCTX-M). The most prevalent resistance was found against ceftazidime (80%), ceftriaxone (80%), cefixime (70%), cefotaxime (70%), gentamicin (70%), cotrimoxazole (60%) and ampicillin (60%). A total of 7 (70%) isolates were resistant to at least three different classes of antimicrobial agents and considered as multidrug resistant. All the isolates were positive for adrA (100%) but negative for csgA and csgD genes. The most frequent virulence gene was invA (100%) and stn (100%). Among the AMR genes, blaTEM (60%) was found to be the major AMR determinants. Moreover, a total of 7 Salmonella isolates were positive for at least one of t biofilm associated genes, virulence genes and AMR genes.

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Occurrence and antimicrobial resistance of bacteria in retail market spices

Ciência Rural ◽

10.1590/0103-8478cr20190775 ◽

2020 ◽

Vol 50 (4) ◽

Author(s):

Milena da Cruz Costa ◽

Alexsandra Iarlen Cabral Cruz ◽

Aline Simões da Rocha Bispo ◽

Mariza Alves Ferreira ◽

João Albany Costa ◽

...

Keyword(s):

Antimicrobial Resistance ◽

Microbiological Quality ◽

Multidrug Resistant ◽

Black Pepper ◽

Resistant Bacteria ◽

Salmonella Spp ◽

Food Markets ◽

E Coli ◽

Bacillus Spp ◽

Mar Index

ABSTRACT: This study aimed to evaluate the microbiological quality and the transmission of multidrug-resistant bacteria in different spices sold in town fairs (local food markets) in the municipalities of Recôncavo Baiano. Samples of black pepper, oregano, and cinnamon were collected over a period of six months and investigated for coliforms at 45 °C, Staphylococcus spp., Staphylococcus aureus, Bacillus spp., Bacillus cereus, Escherichia coli and Salmonella spp. The contamination in the black pepper samples (log 4.66 CFU g-1) was higher (P>0.05), than those of cinnamon (log 2.55 CFU g-1) and oregano (log 2.49 CFU g-1), particularly for B. cereus. E. coli (89%) and Salmonella spp. (67%) were isolated only from black pepper. B. cereus and S. aureus showed greater resistance to β-lactams (penicillin, oxacillin, and cefepime), with approximately 40% of the strains with a multiple antimicrobial resistance (MAR) index of 0.33 (i.e., resistant to three antimicrobials). E. coli was more resistant to ampicillin and Salmonella spp. to nalidixic acid, ampicillin, and ceftriaxone. Salmonella spp. had a MAR index ranging from 0.16 to 0.91 (i.e, resistant to up to 11 antimicrobials), and E. coli to up to 0.58 (i.e., resistant to 7 antimicrobials). In conclusion, the spices sold in the town fairs of Recôncavo Baiano are of low microbiological quality, with the presence of pathogens, of which some display high resistance to antimicrobials that are commonly used for treating foodborne illnesses.

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Detection of Salmonella spp. in exotic pigeons of North Kerala and its antibiogram

Journal of Veterinary and Animal Sciences ◽

10.51966/jvas.2021.52.3.228-233 ◽

2021 ◽

Vol 52 (3) ◽

Author(s):

Lijo John ◽

Lijo John

Keyword(s):

Public Health ◽

Antimicrobial Resistance ◽

Salmonella Spp ◽

Important Public Health ◽

Antimicrobial Sensitivity ◽

Antimicrobial Resistance Profile ◽

Disk Diffusion Assay ◽

Amoxicillin Clavulanate ◽

Diffusion Assay ◽

Pigeon Breeding

Pigeon breeding has transformed from being a mere hobby to becoming established as an industry. The increased trade of pigeons inadvertently invites the risk of dissemination of infections including zoonoses like salmonellosis. Pigeons once infected remain carriers for life. This coupled with the ability of the organism to acquire antimicrobial resistance makes salmonellosis, particularly from pigeons an important, public health risk for pigeon handlers. Cloacal swabs from a total of 200 exotic pigeons belonging to 24 lofts from Northern districts of Kerala were collected and attempted to isolate Salmonella and understand its antimicrobial resistance profile. Five isolates of salmonella could be obtained from four of the lofts studied. A prevalence of 2.5 per cent was identified for salmonellosis with 16.67 per cent of the lofts affected. Antimicrobial sensitivity based on disk diffusion assay revealed that all the five isolates were sensitive to amoxicillin-clavulanate and all were resistant to tetracycline and streptomycin. Sixty per cent of the isolates were sensitive to co-trimoxazole, chloramphenicol, ampicillin, cefoperazone, amikacin and gentamicin.

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Occurrence and antimicrobial resistance profile of Salmonella spp. in calves from the Mesoregion Sertão of Alagoas, Brazil

Acta Veterinaria Brasilica ◽

10.21708/avb.2021.15.1.9363 ◽

2021 ◽

Vol 15 (1) ◽

pp. 36-40

Author(s):

Artur Bibiano de Vasconcelos ◽

Vitoria de Andrade ◽

Ana Carolina Izidoro de Moraes ◽

Elísia Maria Oliveira de Almeida Ramos ◽

Andrezza Caroline Aragão da Silva ◽

...

Keyword(s):

Antimicrobial Resistance ◽

Antibiotic Therapy ◽

Molecular Characterization ◽

Culture Media ◽

Economic Damage ◽

Infectious Agents ◽

Salmonella Spp ◽

Resistance Profile ◽

Antimicrobial Resistance Profile

The diarrhea in calves, caused by Salmonella spp., provocates serious economic damage to cattle farming. This study aimed was to verify the occurrence of diarrhea and the isolation of strains of Salmonella spp. in diarrheal feces of calves from farms located in the Sertão from the state of Alagoas municipalities, and to characterize the in vitro resistance profile of Salmonella spp. isolated against conventional antimicrobials. The study was carried out with 431 calves from 10 to 90 days old. Of the total number of animals evaluated, 111 presented a diarrhea table, being analysed 111 samples of diarrhoeal faeces. The samples were sown in enrichment broths and selective culture media and the phenotypic and molecular characterization were performed. Among the animals evaluated, 25.75% (111/431) had diarrhea. The presence of Salmonella spp. was evidenced in 13.33% (2/15) of the studied establishments. Have been isolated 2.71% (3/111) strains of Salmonella spp. and have all been shown to be resistant to Cefotaxime and sensitive to Ciprofloxacin, Gentamicin, Amoxicillin, Ampicillin and Norfloxacin. Salmonella spp. and other infectious agents associated with diarrhea were confirmed in calves in the Sertão Alagoas mesoregion. The antimicrobial potential of the tested drugs reinforces the importance of their responsible and judicious use in the treatment of Salmonellosis, not being indicated the antibiotic therapy with Cefotaxima. The treatment based on Gentamicin, Amoxicillin, Ampicillin, Ciprofloxacin and Norfloxacin in the treatment of these animals, is recommended.

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Antimicrobial Activity of the Circular Bacteriocin AS-48 against Clinical Multidrug-Resistant Staphylococcus aureus

Antibiotics ◽

10.3390/antibiotics10080925 ◽

2021 ◽

Vol 10 (8) ◽

pp. 925

Author(s):

Cristina Velázquez-Suárez ◽

Rubén Cebrián ◽

Carmen Gasca-Capote ◽

Antonio Sorlózano-Puerto ◽

José Gutiérrez-Fernández ◽

...

Keyword(s):

Staphylococcus Aureus ◽

Antimicrobial Resistance ◽

Multidrug Resistant ◽

Resistance Profile ◽

Risk Of Death ◽

Antimicrobial Resistance Profile ◽

The Matrix ◽

Division Process ◽

Important Challenge ◽

Clinical Source

The treatment and hospital-spread-control of methicillin-resistant Staphylococcus aureus (MRSA) is an important challenge since these bacteria are involved in a considerable number of nosocomial infections that are difficult to treat and produce prolonged hospitalization, thus also increasing the risk of death. In fact, MRSA strains are frequently resistant to all β-lactam antibiotics, and co-resistances with other drugs such as macrolides, aminoglycosides, and lincosamides are usually reported, limiting the therapeutical options. To this must be added that the ability of these bacteria to form biofilms on hospital surfaces and devices confer high antibiotic resistance and favors horizontal gene transfer of genetic-resistant mobile elements, the spreading of infections, and relapses. Here, we genotypically and phenotypically characterized 100 clinically isolated S. aureus for their resistance to 18 antibiotics (33% of them were OXA resistant MRSA) and ability to form biofilms. From them, we selected 48 strains on the basis on genotype group, antimicrobial-resistance profile, and existing OXA resistance to be assayed against bacteriocin AS-48. The results showed that AS-48 was active against all strains, regardless of their clinical source, genotype, antimicrobial resistance profile, or biofilm formation capacity, and this activity was enhanced in the presence of the antimicrobial peptide lysozyme. Finally, we explored the effect of AS-48 on formed S. aureus biofilms, observing a reduction in S. aureus S-33 viability. Changes in the matrix structure of the biofilms as well as in the cell division process were observed with scanning electron microscopy in both S-33 and S-48 S. aureus strains.

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