Knowing the GIS expression of geological phenomena is an important basis for the combination of geology and GIS. Regional geological structures include folds, faults, strata, rocks, and other typical geological phenomena and are the focus of geological GIS research. However, existing research on the GIS expression of regional geological structure focuses on the expression of the spatial and attribute characteristics of geological structures, and our knowledge of the expression of the semantic, relationship, and evolution processes of geological structures is not comprehensive. In this paper, a regional geological structure scene expression model with the semantic terms positional accuracy, geometric shape, relationship type, attribute type, and time-type attributes and operations is proposed. A regional geological structure scenario markup language (RGSSML) and a method for mapping it with graphics are designed to store and graphically express regional geological structure information. According to the geological time scale, a temporal reference coordinate system is defined to dynamically express the evolution of regional geological structures. Based on the dynamic division of the time dimension of regional geological structures, the expression method of “time dimension + space structure” for the regional geological structure evolution process is designed based on the temporal model. Finally, the feasibility and effectiveness of the regional geological structure scene expression method proposed in this paper is verified using the Ningzhen Mountain (Nanjing section) as an example. The research results show that the regional geological structure scene expression method designed in this paper has the following characteristics: (1) It can comprehensively express the spatial characteristics, attribute characteristics, semantics, relationships, and evolution processes of regional geological structures; (2) it can be used to realize formalized expression and unified storage of regional geological information; and (3) it can be used to realize dynamic expression of the regional geological structure evolution process. Moreover, it has significant advantages for the expression of regional geological structure semantics, relationships, and evolution processes. This study improves our knowledge of the GIS expression of regional geological structures and is expected to further promote the combination and development of geology and GIS.