indole acetic acid
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2022 ◽  
Author(s):  
Geeta Chhetri ◽  
Inhyup Kim ◽  
Taegun Seo

Abstract A Gram-stain-positive, aerobic, motile and rod-shaped bacterium, designated RG28T, was isolated from the roots of rice plant collected from paddy fields in Goyang, South Korea. Cells of the strain were oxidase-negative but catalase-positive. Strain RG28T was found to grow at 10–50°C (optimum, 25–30°C), pH 5.0–10.0 (optimum, pH 7.0) and in 1.0–5.0 % (w/v) NaCl (optimum, 0%). The cell-wall peptidoglycan contained meso-diaminopimelic acid and the predominant menaquinones were MK-7 and MK-6.The predominant cellular fatty acids were C16:0, iso-C15:0 and anteiso-C15:0. The major polar lipids included phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol, four unidentified aminophosphoglycolipids, four unidentified aminophospholipids, two unidentified glycolipids, one unidentified aminoglycolipid and four unidentified lipids. The genomic DNA G+C content was 33.5 mol%. Phylogenetic analysis based on 16S rRNA gene sequences showed that the strain was closely related to Gottfriedia acidiceleris CBD 119T (98.6%), Gottfriedia solisilvae LMG 18422T (98.5 %) and Gottfriedia luciferensis LMG 18422T (98.4 %). The average nucleotide identity (ANI) and in silico DNA–DNA hybridization (isDDH) values between strain RG28T and type strains of Gottfriedia species were lower than the cut-offs (≥95–96 % for ANI and ≥70 % for isDDH) required to define a bacterial species. Meanwhile, the strain has the ability to produce indole-acetic acid (40.5 µg/mL). Phylogenetic, physiological and chemotaxonomic data suggested that strain RG28T represented a novel species of the genus Gottfriedia, for which the name Gottfriedia endophyticus sp. nov. is proposed, with the type strain RG28T (=KCTC 43327T=TBRC 15151T).Repositories: The draft genome and 16S rRNA gene sequences of strain RG28T have been deposited in GenBank/EMBL/DDBJ under accession numbers JAGIYQ000000000 and MW386408 respectively.


2021 ◽  
Vol 7 (12) ◽  
pp. 1087
Author(s):  
Alberto Pedrero-Méndez ◽  
H. Camilo Insuasti ◽  
Theodora Neagu ◽  
María Illescas ◽  
M. Belén Rubio ◽  
...  

The search for endophytic fungi in the roots of healthy wheat plants from a non-irrigation field trial allowed us to select 4 out of a total of 54 cultivable isolates belonging to the genus Trichoderma, identified as T. harzianum T136 and T139, T. simmonsii T137, and T. afroharzianum T138. In vitro assays against the phytopathogenic fungus Fusarium graminearum showed that the T. harzianum strains had the highest biocontrol potential and that T136 exhibited the highest cellulase and chitinase activities. Production patterns of eight phytohormones varied among the Trichoderma strains. All four, when applied alone or in combination, colonized roots of other wheat cultivars and promoted seed germination, tillering, and plant growth under optimal irrigation conditions in the greenhouse. Apart from T136, the endophytic Trichoderma strains showed plant protection capacity against drought as they activated the antioxidant enzyme machinery of the wheat plants. However, T. simmonsii T137 gave the best plant size and spike weight performance in water-stressed plants at the end of the crop. This trait correlated with significantly increased production of indole acetic acid and abscisic acid and increased 1-aminocyclopropane-1-carboxylic acid deaminase activity by T137. This study shows the potential of Trichoderma endophytes and that their success in agricultural systems requires careful selection of suitable strains.


2021 ◽  
Vol 13 (2) ◽  
pp. 94-106
Author(s):  
S.I. Musa ◽  
I. Beckley

Phosphorus is a major growth-llimiting nutrient which plays important biochemical role in living system. It is widely distributed in minerals as phosphates. It reacts easily with Fe3+ in ferruginous ultisols and therefore not bioavailable for plant usage. Many bacteria have the ability to solubilize phosphate minerals and make it bioavailable to plants.Thus this research investigates the culturable bacterial composition of ferruginous ultisol, comparative to control soils as well as the phosphate solubilizing capabilities of the isolates for future use in soil improvements. Six soil samples of different ferruginous levels and a control were assayed for physicochemical parameters prior to the experiment. Culturable bacteria as well as the phosphate solubilizing bacteria (PSB) were assayed in Pikovskaya’s medium at 27oC with 7.5 pH for 7days. Six distinct isolates were observed which proved to be Proteus spp., Pseudomonas spp., Klebsiella spp., Salmonella spp., Bacillus spp. and Serratia spp. based on biochemical and morphological characteristics. Of these six isolates, three isolates(EMBF2-Klebsiella spp, BCAF1- Proteus spp and BCAC2- Bacillus spp) were identified to solubilize phosphate by releasing a considerable amount of phosphate (12.01-21.23 ppm) and lowering the pH of the media. The three isolates showed tolerance to acidic and alkaline media and also showed plant growth promoting capabilities by releasing indole acetic acid and siderophores. The result revealed that the three isolates had potential to chelate the ion bond in identified to solubilize phosphate by releasing a considerable amount of phosphate (12.01-21.23 ppm) and lowering the pH of the media. The three isolates showed tolerance to acidic and alkaline media and also showed plant growth promoting capabilities by releasing indole acetic acid and siderophores. The result revealed that the three isolates had potential to chelate the ion bond in Fe3+ in ferruginous ultisol by releasing low molecular weight organic acid, making phosphate to be bioavailable for plant usage. This will serve as biofertilizer in improving yield of crops in ferruginous ultisol and improve soil fertility.


Author(s):  
Xiao-Xian Huang ◽  
Lian Xu ◽  
Ji-Quan Sun

A Gram-stain-positive, facultatively anaerobic, spore-forming, motile with unipolar biflagella, rod-shaped, indole acetic acid-producing bacterium, named LD4P30T, was isolated from a root of Suaeda salsa collected in Inner Mongolia, northern China. Strain LD4P30T grew at pH 6.0–11.0 (optimum, pH 7.0), 10–40 °C (35 °C) and in the presence of 1–15% (w/v) NaCl (5%). The strain was positive for oxidase and negative for catalase. The major cellular fatty acids of strain LD4P30T were iso-C15:0, C15:1 ω5c and anteiso-C15:0; the major polar lipids were diphosphatidylglycerol and phosphatidylglycerol; and menaquinone-7 was the only respiratory quinone. The genomic DNA G+C content was 36.7 mol%. A phylogenetic tree based on 16S rRNA gene sequences showed that strain LD4P30T clustered with Gracilibacillus thailandensis TP2-8T, Gracilibacillus saliphilus YIM 91119T and Gracilibacillus lacisalsi BH312T, and showed 99.0, 98.9, 98.0 and <97.7% 16S rRNA gene similarity to G. thailandensis TP2-8T, G. saliphilus YIM 91119T, G. lacisalsi BH312T and all other current type strains, respectively. The digital DNA–DNA hybridization and average nucleotide identity based on blast values between strain LD4P30T and G. saliphilus YIM 91119T, G. thailandensis TP2-8T and G. lacisalsi BH312T were 44.9, 44.7 and 44.4%, and 91.1, 91.0 and 90.8%, respectively. Based on its phenotypic, physiological and phylogenetic characteristics, strain LD4P30T represents a novel species, for which the name Gracilibacillus suaedae is proposed. The type strain is LD4P30T (=CGMCC 1.17697T=KCTC 82375T).


2021 ◽  
Vol 13 (23) ◽  
pp. 13437
Author(s):  
Abba Nabayi ◽  
Christopher Teh Boon Sung ◽  
Ali Tan Kee Zuan ◽  
Tan Ngai Paing

Washed rice water (WRW) is said to be a beneficial plant fertilizer because of its nutrient content. However, rigorous scientific studies to ascertain its efficiency are lacking. The purpose of this study was to determine the effect of fermenting WRW on the bacterial population and identification, and to measure how fermentation affects the nutrient composition of WRW. Rice grains were washed in a volumetric water-to-rice ratio of 3:1 and at a constant speed of 80 rpm for all treatments. The treatments were WRW fermented at 0 (unfermented), 3, 6, and 9 days. Bacterial N fixation and P and K solubilization abilities in the fermented WRW were assessed both qualitatively and quantitatively. The isolated bacterial strains and the WRW samples were also tested for catalase and indole acetic acid (IAA) production ability. Significantly greater N fixation, P and K solubilization, and IAA production were recorded after 3 days of fermentation compared with other fermentation periods, with increases of 46.9–83.3%, 48.2–84.1%, 73.7–83.6%, and 13.3–85.5%, respectively, in addition to the highest (2.12 × 108 CFU mL−1) total bacterial population. Twelve bacteria strains were isolated from the fermented WRW, and the gene identification showed the presence of beneficial bacteria Bacillus velezensis, Enterobacter spp., Pantoea agglomerans, Klebsiella pneumoniae and Stenotrophomonas maltophilia at the different fermentation periods. All the identified microbes (except Enterobacter sp. Strain WRW-7) were positive for catalase production. Similarly, all the microbes could produce IAA, with Enterobacter spp. strain WRW-10 recording the highest IAA of up to 73.7% higher than other strains. Generally, with increasing fermentation periods, the nutrients N, S, P, K, Mg, NH4+, and NO3− increased, while pH, C, and Cu decreased. Therefore, fermentation of WRW can potentially increase plant growth and enhance soil health because of WRW’s nutrients and microbial promotional effect, particularly after 3 days of fermentation.


2021 ◽  
Author(s):  
Hezekiah Korir ◽  
Nancy W. Mungai ◽  
Victor W. Wasike

Abstract Use of phosphate solubilizing bacteria (PSB) and rhizobia can have a positive effect on the growth of common bean. This study aimed at determining the mechanisms of action of native bacterial strains; and to determine their effect in enhancing growth of common bean. The strains were screened for their ability to solubilize insoluble inorganic phosphates and production of indole acetic acid in vitro. A greenhouse experiment was set up to evaluate the response of common bean to inoculation with selected bacterial strains. Six of the bacterial isolates tested showed a positive result for IAA production. Rhizobium pusense showed the greatest solubilization efficiency of 648 followed by Bacillus megaterium (322.3) and Rhizobium phaseoli (308.7). Inoculation of common bean with Rhizobia and PSB had a significant effect on the number of nodules per plant. The highest shoot biomass was observed when Rhizobium phaseoli was co-inoculated with P. polymyxa (4.3g plant-1) compared to the single Rhizobium phaseoli inoculation (1.14 g plant-1). The shoot tissue nitrogen and phosphorous concentration was increased as a results of co-inoculation up to 32.5% and 75.4% respectively. Therefore, tested bacterial strains have great potential in being formulated and used as biofertilizers that can be evaluated under varying field conditions.


Chemosphere ◽  
2021 ◽  
pp. 133200
Author(s):  
Samia Faiz ◽  
Anis Ali Shah ◽  
Naima Huma Naveed ◽  
Anila Nijabat ◽  
Nasim Ahmad Yasin ◽  
...  

Author(s):  
Olufolake O. Sowobi ◽  
Adewale M. Esan ◽  
Charles O. Olaiya

Indole acetic acid (IAA) and salicylic acid (SA) are plant bioregulators that stimulate the desired growth and quality response in crops. This study examined the impacts of IAA or SA seed pre-treatment on phytochemical constituents and antioxidants potential in three genotypes of tomato plant. The results indicated that IAA and or SA treatments increased height of the three genotypes of tomato significantly (P ≤ 0.05) when compared with the control group. Lycopene, total flavonoid and phenolic contents of genotypes F2 cobra and panther 17 F1 treated with 40, 80, and 120 mg/L concentrations of IAA, respectively increased significantly as compared to the control group. Furthermore, IAA and or SA significantly increased H2O2 scavenging activity of F1 KIARA by 5.0% compared to the control (0.2%). Genotype F1 KIARA treated with IAA and or SA (80 and 120 mg/L) had a significant increase in DPPH scavenging activity by 55.0% and 53.0% respectively, relative to control group (11%). The Fe2+-chelating activity of IAA-treated (80 mg/L) F1 KIARA and F2 COBRA increased by 56.0% and 17.0%, respectively compared to the control. The synergistic effect of IAA and SA showed a significant effect on phytochemical constituents and antioxidant potential than individual treatment. The results showed that IAA application or in combination with SA could be used as an alternative bio-stimulant to improve the quality of tomato.


Author(s):  
Lida Zhang ◽  
Yanjie Jiao ◽  
Ling Ling ◽  
Han Wang ◽  
Wenshuai Song ◽  
...  

A novel growth-promoting and indole acetic acid-producing strain, designated NEAU-LLBT, was isolated from cow dung collected from Shangzhi, Heilongjiang Province, PR China. Cells of strain NEAU-LLBT were Gram-stain-positive, non-motile, aerobic and non-spore-forming. Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain NEAU-LLBT belonged to the genus Microbacterium . Strain NEAU-LLBT had high 16S rRNA sequence similarities of 98.81 and 98.41 % to Microbacterium paludicola DSM 16915T and Microbacterium marinilacus DSM 18904T, and less than 98 % to other members of the genus Microbacterium . Chemotaxonomic characteristics showed that MK-11 and MK-12 were detected as the predominant menaquinones. The peptidoglycan contained glutamic acid, aspartic acid, glycine, ornithine and a small amount of alanine, with ornithine as the diagnostic diamino acid. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and an unidentified glycolipid. The major fatty acids were identified as anteiso-C15 : 0, iso-C16 : 0 and iso-C17 : 0. The genomic DNA G+C content of strain NEAU-LLBT was 70.2 mol%. In addition, the average nucleotide identity values between strain NEAU-LLBT and its reference strains, M. paludicola DSM 16915T, M. marinilacus DSM 18904T and M. album SYSU D8007T, were found to be 81.1, 79.4 and 78.7 %, respectively, and the level of digital DNA–DNA hybridization between them were 23.8, 22.6 and 21.8 %, respectively. Based on the phenotypic, phylogenetic and genotypic data, strain NEAU-LLBT is considered to represent a novel species of the genus Microbacterium , for which the name Microbacterium stercoris sp. nov is proposed, with NEAU-LLBT (=CCTCC AA 2018028T=JCM 32660T) as the type strain.


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