Coprostanol as a Population Biomarker for SARS-CoV-2 Wastewater Surveillance Studies

Wastewater surveillance is a cost-effective tool for monitoring SARS-CoV-2 transmission in a community. However, challenges remain with regard to interpretating such studies, not least in how to compare SARS-CoV-2 levels between different-sized wastewater treatment plants. Viral faecal indicators, including crAssphage and pepper mild mottle virus, have been proposed as population biomarkers to normalise SARS-CoV-2 levels in wastewater. However, as these indicators exhibit variability between individuals and may not be excreted by everyone, their utility as population biomarkers may be limited. Coprostanol, meanwhile, is a bacterial metabolite of cholesterol which is excreted by all individuals. In this study, composite influent samples were collected from a large- and medium-sized wastewater treatment plant in Dublin, Ireland and SARS-CoV-2 N1, crAssphage, pepper mild mottle virus, HF183 and coprostanol levels were determined. SARS-CoV-2 N1 RNA was detected and quantified in all samples from both treatment plants. Regardless of treatment plant size, coprostanol levels exhibited the lowest variation in composite influent samples, while crAssphage exhibited the greatest variation. Moreover, the strongest correlations were observed between SARS-CoV-2 levels and national and Dublin COVID-19 cases when levels were normalised to coprostanol. This work demonstrates the usefulness of coprostanol as a population biomarker for wastewater surveillance studies.

Optimizing Photoperiod Switch to Maximize Floral Biomass and Cannabinoid Yield in Cannabis sativa L.: A Meta-Analytic Quantile Regression Approach

Cannabis sativa L. is an annual, short-day plant, such that long-day lighting promotes vegetative growth while short-day lighting induces flowering. To date, there has been no substantial investigation on how the switch between these photoperiods influences yield of C. sativa despite the tight correlation that plant size and floral biomass have with the timing of photoperiod switches in indoor growing facilities worldwide. Moreover, there are only casual predictions around how the timing of the photoperiodic switch may affect the production of secondary metabolites, like cannabinoids. Here we use a meta-analytic approach to determine when growers should switch photoperiods to optimize C. sativa floral biomass and cannabinoid content. To this end, we searched through ISI Web of Science for peer-reviewed publications of C. sativa that reported experimental photoperiod durations and results containing cannabinoid concentrations and/or floral biomass, then from 26 studies, we estimated the relationship between photoperiod and yield using quantile regression. Floral biomass was maximized when the long daylength photoperiod was minimized (i.e., 14 days), while THC and CBD potency was maximized under long day length photoperiod for ~42 and 49–50 days, respectively. Our work reveals a yield trade-off in C. sativa between cannabinoid concentration and floral biomass where more time spent under long-day lighting maximizes cannabinoid content and less time spent under long-day lighting maximizes floral biomass. Growers should carefully consider the length of long-day lighting exposure as it can be used as a tool to maximize desired yield outcomes.

Phenotypic response to soil compaction varies among genotypes and correlates with plant size in sorghum

Aims Soil compaction is a major yield-reducing factor worldwide and imposes physico-chemical constraints to plant growth and development. Facing limitations, roots can adapt and compensate for loss of functioning through their plasticity. Being primarily a belowground challenge, tolerance to soil compaction needs to be associated with root phenotype and plasticity. It is therefore of importance to distinguish between size-related apparent and size-independent adaptive plasticity. We determined the above- and belowground plasticity of sorghum genotypes varying in overall plant size. Methods We quantified plasticity as the degree response (adaptive and apparent plasticity) to soil compaction and conducted two experiments with sorghum and two soil density levels (1.4 and 1.8 Mg m−3). First, we quantified the shoot biomass plasticity of 28 sorghum genotypes. Second, we studied the root plasticity of six genotypes varying in shoot size and tolerance to soil compaction. Results Plasticity was correlated with plant biomass with larger genotypes responding earlier and more intensely. Soil compaction affected roots more than shoots and plasticity was expressed foremost in nodal root number and fine root length. Impeded plants produced 35 and 47% less root mass and length, respectively. Conclusions Plasticity to soil compaction varies among genotypes, but less-sensitive lines are in general smaller-sized genotypes. The association between tolerance and plant biomass may pose challenges to crop production; however, vigorous genotypes with unresponsive shoots to soil compaction do exist. Maintaining shoot growth relatively stable while the root modifies its structure can be an important adaptation mechanism to soil compaction.

How Does Irrigation Affect Crop Growth? A Mathematical Modeling Approach

This article presents a qualitative mathematical model to simulate the relationship between supplied water and plant growth. A novel aspect of the construction of this phenomenological model is the consideration of a structure of three phases: (1) The soil water availability, (2) the available water inside the plant for its growth, and (3) the plant size or amount of dry matter. From these phases and their interactions, a model based on a three-dimensional nonlinear dynamic system was proposed. The results obtained showed the existence of a single equilibrium point, global and exponentially stable. Additionally, considering the framework of the perturbation theory, this model was perturbed by incorporating irrigation to the available soil water, obtaining some stability results under different assumptions. Later through the control theory, it was demonstrated that the proposed system was controllable. Finally, a numerical simulation of the proposed model was carried out, to depict the soil water content and plant growth dynamic and its agreement with the results of the mathematical analysis. In addition, a specific calibration for field data from an experiment with wheat was considered, and these parameters were then used to test the proposed model, obtaining an error of about 6% in the soil water content estimation.

Size-dependent sex allocation in Solanum lycocarpum St. Hil. (Solanaceae)

Resource allocation to reproduction can change depending on size, as predicted by the size-dependent sex allocation. This theory is based on the fact that small individuals will invest in the allocation of sex with lower cost of production, usually male gender. In plants, there are some andromonoecy species, presence of hermaphrodite and male flowers in the same individual. Andromonoecy provides a strategy to optimally allocate resources to male and female function, evolving a reproductive energy-saving strategy. Thus, our objective was to investigate the size-dependent sex allocation in Solanum lycocarpum St. Hil. We tested the hypothesis that plants with larger size will invest in the production of hermaphrodite flowers, because higher individuals have greater availability of resources to invest in more complex structures involving greater energy expenditure. The studied species was S. lycocarpum, an andromonoecious species. From June 2016 to March 2017 the data were collected in 38 individuals, divided in two groups: the larger plant group (n=18; height=3-5 m) and the smaller plant group (n=20; height=1-2 m).Our data show that there was effect of plant size on the flower production and the sexual gender allocation. The larger plants showed more flowers and higher production of hermaphrodite flowers. Furthermore, in the flower scale, we observed allometric relationship among the flower’s traits with proportional investments in biomass, anther size and gynoecium size. Our results are in agreement with size-dependent sex allocation theory and andromonoecy hypothesis related to mechanisms for optimal resource allocation to male and female function.

Initial Development of Hymeneae courbaril (Linnaeus.) (FABACEAE) under inoculation of edophytic bacteria from Bacillus and Herbaspirillum genus / Desenvolvimento inicial de Hymeneae courbaril (Linnaeus.) (FABACEAE) sob inoculação de bactérias endofíticas dos gêneros Bacillus e Herbaspirillum

The rise of environmental problems and the need for recovery of degraded areas have caused interest in the knowledge of native Brazilian species. One of the major barriers to replanting native forests is the production of seedlings of species that can fuel reforestation programs. Hymenaea courbaril is a forest species, has great forest and environmental importance and is very suitable for plants in degraded areas, which can be restored by vegetation, recommended for silvipastoral, pasture afforestation and others. One of the major barriers to replanting native forests is the production of seedlings of species that can fuel reforestation programs. One solution is how growth promoting bacteria that are part of the plant's resident population and are not phytopathogenic. These bacteria can be used to treat micropropagated seeds, explants and seedlings incorporated into the plant substrate. Thus, due to the lack of studies with growth-promoting bacteria in tree species, the aim of this work is to evaluate or development of H. courbaril seedlings. Inoculants are inoculated with growth-promoting endophytes using biometric parameters such as plant size. collection, leaf number, plant height, root system length, biomass and dry matter of shoot and root system. In general the bacteria Herbaspirillum sp. the best result was obtained when an inoculation directly in the soil, presenting greater development of biometric characters. For the genus Bacillus sp. seed inoculation provided further development of the plants. This study contributes to future research and recommends the use of microbial agents to promote H. courbaril growth.

Why Is the Correct Selection of Trichoderma Strains Important? The Case of Wheat Endophytic Strains of T. harzianum and T. simmonsii

The search for endophytic fungi in the roots of healthy wheat plants from a non-irrigation field trial allowed us to select 4 out of a total of 54 cultivable isolates belonging to the genus Trichoderma, identified as T. harzianum T136 and T139, T. simmonsii T137, and T. afroharzianum T138. In vitro assays against the phytopathogenic fungus Fusarium graminearum showed that the T. harzianum strains had the highest biocontrol potential and that T136 exhibited the highest cellulase and chitinase activities. Production patterns of eight phytohormones varied among the Trichoderma strains. All four, when applied alone or in combination, colonized roots of other wheat cultivars and promoted seed germination, tillering, and plant growth under optimal irrigation conditions in the greenhouse. Apart from T136, the endophytic Trichoderma strains showed plant protection capacity against drought as they activated the antioxidant enzyme machinery of the wheat plants. However, T. simmonsii T137 gave the best plant size and spike weight performance in water-stressed plants at the end of the crop. This trait correlated with significantly increased production of indole acetic acid and abscisic acid and increased 1-aminocyclopropane-1-carboxylic acid deaminase activity by T137. This study shows the potential of Trichoderma endophytes and that their success in agricultural systems requires careful selection of suitable strains.

Scaling trends for balance-of-system costs at land-based wind power plants: Opportunities for innovations in foundation and erection

Wind power plant sizes, hub heights, and turbine ratings have increased since 2008 to optimize the cost and performance of wind power; however, the limits of these economies of scale remain unclear. Here, we explore how the costs incurred to install turbines at a wind power plant—the balance-of-system (BOS) costs—scale with turbine rating, hub height, and plant size. We also investigate how these changes in BOS costs influence the levelized cost of energy (LCOE). We show that increasing the plant size from 150 to 400 MW could reduce the BOS costs by 21%. We also show that if the foundation costs decreased by 50%, building a wind power plant with 5-MW turbines (having rotor diameters of 166 m and hub heights of 120 m) could decrease the LCOE by 5%. These results could help inform future BOS cost-reduction opportunities and thereby reduce future capital costs for land-based wind power.

Habitat Structure, Resources and Natural Enemies: Their Influence on Population Fluctuations of the Kowhai Moth Uresiphita Polygonalis Maorialis (Felder)

<p><b>The importance of habitat structure has been historically discussed in terms of its influence on diversity, distribution and abundance of living organisms. In this regard, the population fluctuations of any particular species, particularly outbreaking insect species, can be expected to be profoundly influenced by the structure of the habitat. A set of ecological hypotheses, such as, the associational resistance, plant decoy, habitat heterogeneity and resource concentration have implicitly included the structure of the habitat determined by the structure (size, density, physical location) of the host plant and other surrounding plant species. Moreover, type, quality and availability of resources, in addition to the presence of other interacting organisms, e.g. competitors, predators and parasites, have also been considered determining factors in the population fluctuation of outbreaking species. The aim of this thesis is to contribute to the understanding of how the outbreaks of the kowhai moth, U. polygonalis maorialis, relate to the physical structure of the habitat, the availability of resources, specific host plants and to natural enemies.</b></p> <p>In the first experimental chapter of my thesis I studied the fluctuations of the U. polygonalis maorialis larvae and their impacts on the defoliation levels of Sophora spp. plants. I carried out a survey in urban and suburban areas of Wellington city. I examined levels of defoliation of the host plants and population fluctuations in terms of a set of biotic and abiotic variables. These variables were selected in order to cover a range of measures of habitat structure, resource availability and invertebrate community. I modelled such responses to find which variables better explained the observed defoliation and larval population fluctuations. The best fitted model showed that levels of observed defoliation were explained by the structure of the vegetation surrounding the main host plant (vertical and horizontal) and the species of host plant. Population fluctuations of the kowhai moth were explained by the following predicting variables: density of natural enemies, structure of the vegetation surrounding the main host plant (vertical and horizontal), host plant size, level of habitat disturbance, type of habitat (urban/suburban) and the Sophora spp.</p> <p>In my second experimental chapter, I focused on the importance of availability of resources to explain observed densities of U. polygonalis maorialis and phytophagous insects. In my observational experiment I tested the resource concentration hypothesis and the natural enemies hypothesis, by studying the fluctuations of U. polygonalis maorialis larvae on individuals of Sophora microphylla plants located in gardens across Wellington city. Larval densities were found to be higher on smaller plants than large plants, whereas natural enemies did not show specific responses to plant size. In my manipulative experiment I originally aimed for the establishment of U. polygonalis maorialis in the experimental plots. Unfortunately, these were not colonised by U. polygonalis maorialis, instead I studied phytophagous insects that colonised the plots. I found no differences among the S. microphylla treatments for the levels of establishment of phytophagous invertebrates. On the contrary, the amount of nil records was high and there was an overall high variability among treatments and low rate of establishment throughout the sampling season. Nevertheless, natural enemies were found to occur more often at higher densities in plots with lower plant density in only two specific dates.</p> <p>Uresiphita polygonalis maorialis is the main defoliator of Sophora spp in New Zealand. In this context I studied the feeding and oviposition preferences of the moth for the three most commonly found species of Sophora plants in Wellington city. Sophora tetraptera was the preferred species chosen by the female moth. The same species was also the most palatable and preferred when confronted to S. microphylla and S. prostrata. These patterns observed in controlled conditions are coincident with observations made in the field throughout the study.</p> <p>Within the set of variables determined by the invertebrate community, the influence of natural enemies on an herbivorous population is one of the most important in terms of population regulation. In my last experimental chapter I found a positive correlation among the parasitism by M. pulchricornis and U. polygonalis maorialis larval densities, which opens the possibilities for future research to explore the potential existence of population regulation mechanisms between these two taxa.</p> <p>Overall, the results of my thesis highlight the importance of understanding the influence of the structure of the habitat, types of resources provided by plants and natural enemies in determining the fluctuations of outbreaking insect species.</p>