Fungal Cell Wall Proteins and Signaling Pathways Form a Cytoprotective Network to Combat Stresses

Candida species are part of the normal flora of humans, but once the immune system of the host is impaired and they escape from commensal niches, they shift from commensal to pathogen causing candidiasis. Candida albicans remains the primary cause of candidiasis, accounting for about 60% of the global candidiasis burden. The cell wall of C. albicans and related fungal pathogens forms the interface with the host, gives fungal cells their shape, and also provides protection against stresses. The cell wall is a dynamic organelle with great adaptive flexibility that allows remodeling, morphogenesis, and changes in its components in response to the environment. It is mainly composed of the inner polysaccharide rich layer (chitin, and β-glucan) and the outer protein coat (mannoproteins). The highly glycosylated protein coat mediates interactions between C. albicans cells and their environment, including reprograming of wall architecture in response to several conditions, such as carbon source, pH, high temperature, and morphogenesis. The mannoproteins are also associated with C. albicans adherence, drug resistance, and virulence. Vitally, the mannoproteins contribute to cell wall construction and especially cell wall remodeling when cells encounter physical and chemical stresses. This review describes the interconnected cell wall integrity (CWI) and stress-activated pathways (e.g., Hog1, Cek1, and Mkc1 mediated pathways) that regulates cell wall remodeling and the expression of some of the mannoproteins in C. albicans and other species. The mannoproteins of the surface coat is of great importance to pathogen survival, growth, and virulence, thus understanding their structure and function as well as regulatory mechanisms can pave the way for better management of candidiasis.

Assessment of COVID-19 treatment advised in different ethnic populations

: The virus is an infective specialist that regularly comprises a nucleic corrosive atom in a protein coat that is too little to even think about being seen by light microscopy and can multiplicate inside the living cells of a host. COVID is a gathering of infections that can cause disease, for instance, the essential basic cold, severe acute respiratory syndrome (SARS), and the Middle East respiratory syndrome (MERS). Numerous individuals debased with the COVID-19 contamination will experience smooth coordination respiratory disease and recover without requiring the common treatment. More prepared people and those with concealed clinical issues like cardiovascular disorder, diabetes, diligent respiratory contamination will undoubtedly make certified illness. The COVID-19 disease spreads generally through dabs of spit or delivery from the nose when a debased individual hacks or sneezes, so it is critical that you in like manner practice respiratory conduct (for example, by hacking into a flexed elbow). In 2019, another contamination perceived in china specifically novel COVID disease 2019 (COVID-19) was found, and on the 11th of March 2020, COVID-19 was depicted as a pandemic sickness by the World Health Organization which is rapidly stretching out to 194 countries that incorporate Europe, North America, Asia, Middle East, Latin America, and Africa. The best way to deal with thwart and ruin transmission is to be instructed about the COVID-19 contamination, the illness it causes, and how it spreads. In this survey, we are endeavoring to focus on the drugs that are used for COVID19 and their segment of movement at present chose by different nations.

Validation of Safety Guidelines Adopted for COVID – 19 in Nigeria: The Guidance and Counseling Perspective

Background: This paper adopted scientific approach to validate the WHO/NCDC safety counseling guidelines to prevent the spread of the SARS-COV 2 coronaviruses in Nigeria in the guidance and counseling perspectives using the sequence characteristics of SARS-COV 2 in Nigeria as validation criterion. Methods: Five hypotheses were used to validate the safety counseling guidelines currently operational globally. Bioinformatics analysis of retrieved RdRP sequences was adopted. Results: All alternate hypotheses were accepted indicating the validity of each of the criterion. Indicators validated included the use of soap (foam) can dissolve the fatty layer of the virus protein coat through regular washing of hands. Heat (high temperature) above 26°C can melt the virus protect as well as hot water. Alkaline water or basic solution with high pH was found to destroy the virus protein coat. Alcohols based sanitizers was also found to dissolve the fat especially the outer lipid layer. High ultra violet light (extinction coefficient) exposures on any object harboring the virus was found to breakdown the viral protein coat while high molecular weight of the coronaviruses confines them to the nose mask or face shield on infected patients. Hence the advocacy for the use of personal protective equipment and the nose mask. The study also validated and revealed that coronavirus strain in Nigeria (MT159778.1) shows a high molecular weight (16289.82g/mol), Total number of negatively charged amino acid residues (11), Total number of positively charged amino acid residues (14), aliphatic index (95.45%), instability index (49.67%), G-C content (38.34%), Half-life (1.2 hrs), alpha helix (49.66%), extinction coefficient (15065m/mol), isoelectric point (8.33) and Hydropathicity (0.106). Conclusion: These are the validities that constitutes’ the guidance and counseling perspective on the WHO/NCDC issued safety guidelines towards preventing the spread of the COVID – 19 coronaviruses globally.

Resistance of transgenic papaya trees to papaya ringspot in Brazil

The objective of this work was to evaluate the resistance of transgenic papaya populations (PTPs) to Papaya ringspot virus-P (PRSV-P). 'Sunrise Solo' transgenic papaya plants were produced with the gene of the PRSV-P protein coat, and PRSV was mechanically inoculated in plants in greenhouse conditions. The presence of the CP/PRSV gene and homozygosis were evaluated by polymerase chain reaction (PCR). Selected plants and the 'Sunrise Solo' control were transplanted to the field for agronomic evaluations. The plants evaluated in greenhouse conditions showed resistance between 96.3 and 5.8%, without variation of symptoms. The PTPs 1/6, 1/7, 1/9, 1/10, 1/15, 2/38, 2/41, 2/56, 2/65, 3/27, 3/46, 3/48, 4/9, 4/27, 8/4, 8/23, 8/33, 18/3, 18/4, 18/8, 18/22, 18/27, 28/97, 28/104, and 28/110 showed no symptoms, they were ELISA negative, and most of them contained the CP and NPT II genes. PTPs 1/6 and 3/46 had the CP gene in homozygosis and in double insertion. PTPs 1/6/20, 1/6/59, 1/6/64, 1/6/90, 3/46/44, 3/46/52, and 18/27/97 had a well-formed fruit cluster, piriform fruit weighing approximately 500 grams, orange pulp, and less than 10% carpelloidy. PTPs 1/6/59 and 3/46/52 show resistance to PRSV, good agronomic characteristics, and the CP gene in homozygosis.

Clinical Validation of a SARS-CoV-2 Real-Time Reverse Transcription PCR Assay Targeting the Nucleocapsid Gene

Background Detection of SARS-CoV-2 viral RNA is important for the diagnosis and management of COVID-19. Methods We present a clinical validation of a reverse transcription PCR (RT-PCR) assay for the SARS-CoV-2 nucleocapsid (N1) gene. Off-board lysis on an automated nucleic acid extraction system was optimized with endemic coronaviruses (OC43 and NL63). Genomic RNA and SARS-CoV-2 RNA in a recombinant viral protein coat were used as control materials and compared for recovery from nucleic acid extraction. Results Nucleic acid extraction showed decreased recovery of endemic Coronavirus in vitro transcribed RNA (NL63) compared with attenuated virus (OC43). SARS-CoV-2 RNA had more reliable recovery from extraction through amplification than genomic RNA. Recovery of genomic RNA was improved by combining lysis buffer with clinical matrix before adding RNA. The RT-PCR assay demonstrated 100% in silico sensitivity and specificity. The accuracy across samples was 100% (75 of 75). Precision studies showed 100% intra-run, inter-run, and inter-technologist concordance. The limit of detection was 264 copies per milliliter (estimated 5 copies per reaction; 35.56 mean threshold cycle value). Conclusions This SARS-CoV-2 assay demonstrates appropriate characteristics for use under an Emergency Use Authorization. Endemic coronavirus controls were useful in optimizing the extraction procedure. In the absence of live or attenuated virus, recombinant virus in a protein coat is an appropriate control specimen type for assay validation during a pandemic.

That pesky nucleic acid molecule in a protein coat

In March it seemed not only surreal but impossible to comprehend that the coronavirus would ever venture near our shores – and yet here it is. Jane Hanley looks at the effects of the pandemic on the emotional wellbeing of parents and professionals alike

Dogs (Canis lupus familiaris) as Virus Carrier in Indonesia

A Virus is an individual that cannot be described as an animal or a plant. If animals and plants contain two nucleic acids (DNA and RNA), on the contrary, the virus only has one of them. These nucleic acids can stimulate a complete virus replication cycle. The virus can only replicate and live on a living host if the host is finally dead, then the virus will move on the cells that are still alive. The virus has genetic material which is a protective protein coat called a capsid. Viruses can infect various varieties of organisms, both eukaryotes (animals, plants, protists, and fungi) and prokaryotes (bacteria and archaea). The Virus infects bacteria known as bacteriophage (phage). The Virus can cause serious diseases for humans such as AIDS, HIV, rabies, etc. Dogs belonging to Canidae family are the sibling of wolves, foxes and raccoon dogs. Among all members of Canidae, dogs have the most closely related to wolves which are the ancestors of dogs. The Canidae family generally has a small elongated body, sharp ear and muzzle, sharp smelling, can run fast and can swim. Dogs are human best friends. While taking care of the dogs, they can be attacked by various diseases. The closeness of the relationship between humans and dogs raises the potential for disease transmission, especially zoonosis and pandemics viruses. Keywords: Canis lupus familiaris, Carier, Influenza, virus

The ecology of viruses

In addition to grazing, another form of top-down control of microbes is lysis by viruses. Every organism in the biosphere is probably infected by at least one virus, but the most common viruses are thought to be those that infect bacteria. Viruses come in many varieties, but the simplest is a form of nucleic acid wrapped in a protein coat. The form of nucleic acid can be virtually any type of RNA or DNA, single or double stranded. Few viruses in nature can be identified by traditional methods because their hosts cannot be grown in the laboratory. Direct count methods have found that viruses are very abundant, being about ten-fold more abundant than bacteria, but the ratio of viruses to bacteria varies greatly. Viruses are thought to account for about 50% of bacterial mortality but the percentage varies from zero to 100%, depending on the environment and time. In addition to viruses of bacteria and cyanobacteria, microbial ecologists have examined viruses of algae and the possibility that viral lysis ends phytoplankton blooms. Viruses infecting fungi do not appear to lyse their host and are transmitted from one fungus to another without being released into the external environment. While viral lysis and grazing are both top-down controls on microbial growth, they differ in several crucial respects. Unlike grazers, which often completely oxidize prey organic material to carbon dioxide and inorganic nutrients, viral lysis releases the organic material from hosts more or less without modification. Perhaps even more important, viruses may facilitate the exchange of genetic material from one host to another. Metagenomic approaches have been used to explore viral diversity and the dynamics of virus communities in natural environments.

The ESCRT-III proteins IST1 and CHMP1B assemble around nucleic acids

ABSTRACTESCRT-III proteins can promote inside-out or outside-in membrane tubulation and fission. In addition, several observations suggest that ESCRT factors may also associate with nucleic acids during development, different stages of the cell cycle, and during retro-transposition of parasitic nucleic acids like LINE1 elements. Two ESCRT-III subunits, IST1 (aka CHMP8) and CHMP1B, can coassemble as an external protein coat around liposomesin vitroand around recycling endosomal tubules in living cells. Here we show that recombinant IST1 and CHMP1B can also copolymerize into double stranded filaments that surround nucleic acids. Electron cryo-microscopy reconstructions of nucleic acid-bound IST1-CHMP1B copolymers revealed that the polynucleotides track along a binding groove formed between filaments of the inner CHMP1B strand. The well-ordered structures also reveal that the C-terminal tails of CHMP1B subunits extrude through the outer IST1 layer to the tube exterior. As a result, the MIT domain binding motifs of both CHMP1B and IST1 are arrayed on the outer surface of the copolymer, where they could bind and recruit MIT domain-containing co-factors, such as the SPASTIN ATPase or the USP8 ubiquitin protease. Our structure raises the possibility that ESCRT-III proteins may form nucleic acid complexes in mammalian cells.

1. What are viruses?

‘What are viruses?’ introduces viruses and their structure. Martinus Beijerinck, in 1898, was the first to coin the term ‘virus’, and invention of the electron microscope in the late 1930s greatly enhanced virus identification. Viruses are not cells, but obligate parasites that must infect a cell and use its organelles in order to reproduce. They carry either DNA or RNA, and have a protein coat called a capsid. The whole structure is called a virion. Viruses have a high mutation rate, which helps them to survive and boost their resistance to antiviral drugs. The molecular clock technique to track a virus’s history is also explained.