Trophic and symbiotic links between obligate-glacier water bears (Tardigrada) and cryoconite microorganisms

Insights into biodiversity and trophic webs are important for understanding ecosystem functions. Although the surfaces of glaciers are one of the most productive and biologically diverse parts of the cryosphere, the links between top consumers, their diet and microbial communities are poorly understood. In this study, for the first time we investigated the relationships between bacteria, fungi and other microeukaryotes as they relate to tardigrades, microscopic metazoans that are top consumers in cryoconite, a biologically rich and productive biogenic sediment found on glacier surfaces. Using metabarcoding (16S rDNA for bacteria, ITS1 for fungi, and 18S rDNA for other microeukaryotes), we analyzed the microbial community structures of cryoconite and compared them with the community found in both fully fed and starved tardigrades. The community structure of each microbial group (bacteria, fungi, microeukaryotes) were similar within each host group (cryoconite, fully fed tardigrades and starved tardigrades), and differed significantly between groups, as indicated by redundancy analyses. The relative number of operational taxonomic units (ZOTUs, OTUs) and the Shannon index differed significantly between cryoconite and tardigrades. Species indicator analysis highlighted a group of microbial taxa typical of both fully fed and starved tardigrades (potential commensals), like the bacteria of the genera Staphylococcus and Stenotrophomonas, as well as a group of taxa typical of both cryoconite and fully fed tardigrades (likely part of the tardigrade diet; bacteria Flavobacterium sp., fungi Preussia sp., algae Trebouxiophyceae sp.). Tardigrades are consumers of bacteria, fungi and other microeukaryotes in cryoconite and, being hosts for diverse microbes, their presence can enrich the microbiome of glaciers.

Occurrence of potential plastic microfibers in mussels and anchovies sold for human consumption: Preliminary results

There is a global concern over the impact of microplastics on marine species and trophic webs. Microfibers commonly represent the greater portion of microplastics in the aquatic environment, but little is known about fiber uptake and accumulation by marine biota. The aim of the study was to investigate the potential plastic microfiber contamination in mussels (Mytilus galloprovincialis) and anchovies (Engraulis encrasicolus) from the Tyrrhenian Sea sold for human consumption. Anthropogenic debris was extracted from the digestive tracts of fish and the whole shellfish using a 10% KOH solution and quantified under a light microscope. The preliminary results showed the occurrence of potential plastic and natural microfibers in 73% of the samples. On average mussels contained 1.33 microfibers/g w.w. and 7.66 items/individual, while anchovies contained 9.06 microfibers/individual. Considering that mussels are consumed as a whole, and small pelagic fish, as anchovy, may be eaten without removing the gastrointestinal tract, microfiber contamination may lead to human exposure. More research is required to adequately assess the risk that microplastics, including microfibers, may pose for food safety and human health.

Bolstering fitness via CO2 fixation and organic carbon uptake: mixotrophs in modern groundwater

Current understanding of organic carbon inputs into ecosystems lacking photosynthetic primary production is predicated on data and inferences derived almost entirely from metagenomic analyses. The elevated abundances of putative chemolithoautotrophs in groundwaters suggest that dark CO2 fixation is an integral component of subsurface trophic webs. To understand the impact of autotrophically fixed carbon, the flux of CO2-derived carbon through various populations of subsurface microbiota must first be resolved, both quantitatively and temporally. Here we implement novel Stable Isotope Cluster Analysis to render a time-resolved and quantitative evaluation of 13CO2-derived carbon flow through a groundwater community in microcosms stimulated with reduced sulfur compounds. We demonstrate that mixotrophs, not strict autotrophs, were the most abundant active organisms in groundwater microcosms. Species of Hydrogenophaga, Polaromonas, Dechloromonas, and other metabolically versatile mixotrophs drove the production and remineralization of organic carbon. Their activity facilitated the replacement of 43% and 80% of total microbial carbon stores in the groundwater microcosms with 13C in just 21 and 70 days, respectively. The mixotrophs employed different strategies for satisfying their carbon requirements by balancing CO2 fixation and uptake of available organic compounds. These different strategies might provide fitness under nutrient-limited conditions, explaining the great abundances of mixotrophs in other oligotrophic habitats, such as the upper ocean and boreal lakes.

Biovolume Method for Foraminiferal Biomass Assessment: Evaluation of Geometric Models and Incorporation of Species Mean Cell Occupancy

ABSTRACT Foraminifers are widespread, highly abundant protists and active participants in marine carbon cycling. Their biomass might represent almost half of the total meiobenthic biomass in the deep sea. Foraminiferal biomass is frequently assessed through geometric models and biovolume estimates due to its non-destructive nature, which allows estimates of individuals from palaeoecological, museum, and living samples. To increase the accuracy of foraminiferal biovolume and biomass assessment we evaluate and propose geometric models for 207 foraminiferal taxa and the species’ average cell occupancy of the test. Individual test dimensions were measured to calculate volume (µm³), and the percent of cell occupancy (PCO) of the test was measured to assess the biovolume (µm³). These data were converted into individual biomass measurements (µg Corg ind−1). Our high intra- and interspecific PCO variance suggest that a mean PCO for each species represents the natural variability of occupancy more accurately than a predetermined fixed percentage for the whole assemblage, as previously asserted in the literature. Regression equations based on the relationship between test dimensions and volumes are presented. The geometric models, the PCO adjustment, and the equations will reduce time, effort, and discrepancies in foraminiferal biovolume and biomass assessments. Therefore, these results can improve the use and reliability of foraminiferal biomass in the future, facilitating its use in (1) distinct approaches including carbon flux estimations, (2) determining the effects of climate change on the marine trophic webs, and (3) environmental monitoring programs.

Environmental Drivers of Macroinvertebrate Assemblages within Peat Pool Habitat-Implication for Bioassessment

Macroinvertebrates are a crucial component of wetland trophic webs. Many taxa are used as bioindicators of ecosystem change. However, relationships between macroinvertebrates and the environmental factors in peat pool habitats are still not well recognized. The present study shows the results of long-term studies during the years 2010–2020, on the responses of macroinvertebrates to the changes of environmental variables in a peat pool habitat formed as a result of peat exploitation on continental raised bog. The RDA analysis significantly explained 87.3% of the variance in macroinvertebrates abundances. Assemblages of most taxa (Anisoptera, Chironomidae, Ceratopogonidae, Coleoptera, Hydrachnidia and Tabanidae) showed a strong relationship with N-NO3 and pH. Moreover, densities of Chaoboridae larvae were explained by chlorophyll-a concentrations. Dominant taxon, Chironomidae, constituted from 48% to 87% of total faunal density. The highest proportions showed larvae of Psectrocladius sp. (gr. sordidellus) and Chironomus sp. Changes in the composition of macroinvertebrate fauna over a period of 10 years reflect the eutrophication process of the peat pool and deterioration of habitat conditions.

Competitive advantage of oral streptococci for colonization of the middle ear mucosa

The intermittent aeration of the middle ear seeds its mucosa with saliva aerosols and selects for a distinct community of commensals adapted to the otic microenvironment. We gained insights into the selective forces that enrich for specific groups of oral migrants in the middle ear mucosa by investigating the phylogeny and physiology of 19 strains enriched (Streptococcus) or transiently present (Staphylococcus, Neisseria and actinobacterial Micrococcus and Corynebacterium) in otic secretions. Phylogenetic analyses of full length 16S rRNA sequences resolved close relationships between the streptococcal strains and oral commensals as well as between the transient migrants and known nasal and oral species. Physiological functions that facilitate mucosal colonization (swarming motility, surfactant production) and nutrition (mucin and protein degradation) were widespread in all the otic cultivars, as was the ability of most of the isolates to grow both aerobically and anaerobically. However, streptococci stood out for their enhanced biofilm-forming abilities under oxic and anoxic conditions and for their efficient fermentation of mucosal substrates into lactate, a key metabolic intermediate in the otic trophic webs. Additionally, the otic streptococci inhibited the growth of common otopathogens, an antagonistic interaction that could exclude competitors and protect the middle ear mucosa from infections by transient pathobionts. These adaptive traits allow streptococcal migrants to colonize the otic mucosa and grow microcolonies with syntrophic anaerobic partners, establishing trophic webs with other commensals similar to those formed by the oral ancestors in buccal biofilms.

Food Webs

Ciliates are important elements of the trophic networks of aquatic and terrestrial environments, they can be primary producers (myxotrophs), consumers of bacteria, algae, flagellates, even other ciliates and can serve as food for metazoans, for all the above they are the link between different levels of food webs. The structure of the ciliates varies according to the seasons of the year and depending on the trophic conditions of the aquatic systems. Ciliated communities have modifications and adaptations in response to environmental perturbations. The objective of this chapter is to describe the importance of different trophic groups of ciliates in different ecosystems, including anthropogenic perturbations and their impact on trophic webs.

Conservation Studies on Groundwaters’ Pollution: Challenges and Perspectives for Stygofauna Communities

Assessing the effects of pollution in groundwaters is recently considered among the most relevant aims for subterranean biology; with this perspective, we aim to provide examples of the most relevant effects that pollution may cause on stygofauna community and underline patterns deserving further investigations. We retrieved different cases in which pollution caused alteration of groundwater trophic webs, favored invasions by epigean mesopredators, damaged stygobiont keystone species, and promoted interspecific competition between stygobionts and epigean animals. The results and the remarks derived from our perspective review underline that pollution may play multifaceted effects on groundwaters communities, and the paucity of information that exists on community-level changes and threats underlines the necessity for further studies.

FEEDING HABITS OF Paralonchurus brasiliensis (PERCIFORMES: SCIAENIDAE) FROM SOUTH OF BRAZIL

Shrimp trawling directly impacts target species and non-target species, altering micro-habitats and marine trophic webs. Thus, the objective of the present research was to analyze the feeding habits of Paralonchurus brasiliensis as a tool to evaluate the impact of trawling on the food chains in marine environments, in the South Atlantic of Brazil. One thousand and nineteen stomachs of P. brasiliensis were dissected after being captured as bycatch of shrimp Xiphopenaeus kroyeri, in Penha, on the north central coast of Santa Catarina, Brazil. The number of stomachs was enough to describe the feeding habits of P. brasiliensis, characterizing it as a carnivorous species and predominantly invertivorous. They also revealed that this species has a diversified and constant diet, with greater consumption of polychaetes, crustaceans, and ofiuroides, among other components of the macrobentos, all closely related to the sediment. It was also found that the target species X. kroyeri is not an important prey in the diet of P. brasiliensis, despite occupying the same habitat. According to the present study, P. brasiliensis can be characterized as a demersal-benthic species, predator, opportunistic and broad trophic spectrum. This work contributes to the understanding of trophic chains of the coastal ecosystems, using the P. brasiliensis as a model.