Highest Defoliation Tolerance in Amaranthus cruentus Plants at Panicle Development Is Associated With Sugar Starvation Responses

Defoliation tolerance (DT) in Amaranthus cruentus is known to reach its apex at the panicle emergence (PE) phase and to decline to minimal levels at flowering (FL). In this study, defoliation-induced changes were recorded in the content of non-structural carbohydrates and raffinose family oligosaccharides (RFOs), and in the expression and/or activity of sugar starvation response-associated genes in plants defoliated at different vegetative and reproductive stages. This strategy identified sugar-starvation-related factors that explained the opposite DT observed at these key developmental stages. Peak DT at PE was associated with increased cytosolic invertase (CI) activity in all organs and with the extensive induction of various class II trehalose-phosphate synthase (TPS) genes. Contrariwise, least DT at FL coincided with a sharp depletion of starch reserves and with sucrose (Suc) accumulation, in leaves and stems, the latter of which was consistent with very low levels of CI and vacuolar invertase activities that were not further modified by defoliation. Increased Suc suggested growth-inhibiting conditions associated with altered cytosolic Suc-to-hexose ratios in plants defoliated at FL. Augmented cell wall invertase activity in leaves and roots, probably acting in a regulatory rather than hydrolytic role, was also associated with minimal DT observed at FL. The widespread contrast in gene expression patterns in panicles also matched the opposite DT observed at PE and FL. These results reinforce the concept that a localized sugar starvation response caused by C partitioning is crucial for DT in grain amaranth.

Effects of substrate quality on carbon partitioning in a temperate grassland soil as influenced by microbial activity

Using organic amendments, including livestock slurry, in intensively managed agricultural grasslands may potential lead to multiple benefits, including plant nutrient supply to soils and long-term accumulation of soil organic matter. There is increasing interest in the extent to which biological slurry additives (mixtures of selected living or latent microorganisms added to slurry) are able to enhance soil fertility through mobilisation of key elements in the slurry and in the soil. However, little is known about the impacts of slurries amended with biological additives on carbon (C) partitioning within three pools: respired CO2, microbial biomass C (Cmic) and C retained in the soil. We report data from incubation experiments in which soils received livestock slurry treated with a commercial biological additive, alongside 14C-labelled carbohydrates of different lability (14C-glucose, 14C-glucose 6-phosphate (G6P), and 14C-cellulose). The aim of this experiment was to understand how slurry that has received a biological additive ultimately affects the partitioning of C within these pools, alongside how slurry additives influence soil microbial biomass and the priming effect (PE) in soil. The addition of slurry alongside carbohydrates to soil resulted in lower 14C biomass uptake and greater residual 14C activities in soil, as well as to lower cumulative respiration and PE, compared to the corresponding carbohydrate-only treatments. Competition in the soil between the indigenous microbial community and the microbial community associated with slurry is proposed to account for the apparent suppression of biomass uptake of added C-substrate and of cumulative respiration. Our findings also seem to indicate that the addition of a biological additive to slurry resulted in higher cumulative CO2 efflux from soil compared to the unamended slurry, both for glucose and G6P treatments. This suggests that biological slurry additives may have the potential to reduce the suppressive effect of slurry microorganisms on native soil microorganisms.

Applying Molecular Phenotyping Tools to Explore Sugarcane Carbon Potential

Sugarcane (Saccharum spp.), a C4 grass, has a peculiar feature: it accumulates, gradient-wise, large amounts of carbon (C) as sucrose in its culms through a complex pathway. Apart from being a sustainable crop concerning C efficiency and bioenergetic yield per hectare, sugarcane is used as feedstock for producing ethanol, sugar, high-value compounds, and products (e.g., polymers and succinate), and bioelectricity, earning the title of the world’s leading biomass crop. Commercial cultivars, hybrids bearing high levels of polyploidy, and aneuploidy, are selected from a large number of crosses among suitable parental genotypes followed by the cloning of superior individuals among the progeny. Traditionally, these classical breeding strategies have been favoring the selection of cultivars with high sucrose content and resistance to environmental stresses. A current paradigm change in sugarcane breeding programs aims to alter the balance of C partitioning as a means to provide more plasticity in the sustainable use of this biomass for metabolic engineering and green chemistry. The recently available sugarcane genetic assemblies powered by data science provide exciting perspectives to increase biomass, as the current sugarcane yield is roughly 20% of its predicted potential. Nowadays, several molecular phenotyping tools can be applied to meet the predicted sugarcane C potential, mainly targeting two competing pathways: sucrose production/storage and biomass accumulation. Here we discuss how molecular phenotyping can be a powerful tool to assist breeding programs and which strategies could be adopted depending on the desired final products. We also tackle the advances in genetic markers and mapping as well as how functional genomics and genetic transformation might be able to improve yield and saccharification rates. Finally, we review how “omics” advances are promising to speed up plant breeding and reach the unexplored potential of sugarcane in terms of sucrose and biomass production.

Variation in sugarcane biomass composition and enzymatic saccharification of leaves, internodes and roots

Background The composition of biomass determines its suitability for different applications within a biorefinery system. The proportion of the major biomass fractions (sugar, cellulose, hemicellulose and lignin) may vary in different sugarcane genotypes and growth environments and different parts of the plant. This study investigated the composition of mature and immature internodes, roots and mature leaves of sugarcane. Results Internodes were found to have a significantly larger alcohol-soluble component than leaves and roots. The primary difference between the immature and mature internodes was the ratio of soluble sugars. In mature tissues, sucrose content was significantly higher, whereas in immature internodal tissues there was lower sucrose and heightened concentrations of reducing sugars. Carbon (C) partitioning in leaf tissues was characterised by low levels of soluble components and high “other” and cell wall fractions. Root tissue had low ratios of soluble fractions relative to their cell wall contents, indicating a lack of storage of soluble carbon. There was no significant difference in the ratio of the major cell wall fractions between the major organ types. Characterisation of individual non-cellulosic monomers indicated leaf and root tissues had significantly higher arabinose and galactose fractions. Significantly larger proportions of syringyl lignin compounds and the hydroxycinnamic compound, p-coumaric acid were observed in mature internodal tissues compared to the other tissue types. Tissue-specific differences in composition were shown to greatly affect the recalcitrance of the cell wall to enzymatic saccharification. Conclusions Overall, this study displayed clear evidence of the differential partitioning of C throughout the sugarcane plant in specific organs. These organ-specific differences have major implications in their utility as a bioproduct feedstock. For example, the inclusion of trash (leaves) with the culms (internodes) may alter processing efficiency.

Core formation and magma ocean outgassing set planetary N-S-C ratios

Earth’s volatile elements cannot be accounted for as mixtures of different chondrites, despite their clear chondritic heritage. Early-acting, but as yet unidentified, processes apparently fractionated volatile elements now contained by planets. Here we test the hypothesis that planetary-scale differentiation, namely core formation and primordial atmosphere degassing, set Earth’s distribution of N, S, and C. To this end, we report new metal-silicate partitioning experiments on N up to 26 GPa and 3400 K; the highest pressure and temperatures conditions yet explored. Our results highlight a strong, positive effect of pressure on nitrogen partitioning into cores. We apply our new experiments with literature data for S and C partitioning to a model that couples core formation with degassing into the primordial atmosphere, to demonstrate that volatile elements ratios for Earth, and potentially Mars and Venus, can be set by primordial differentiation under conditions that also satisfy their moderately siderophile element budgets.

Influence of the Quenching and Partitioning Process on the Transformation Kinetics and Hardness in a Lean Medium Manganese TRIP Steel

The quenching and partitioning (Q&P) process of lean medium Mn steels is a novel approach for producing ultra-high strength and good formable steels. First, the steel is fully austenitized, followed by quenching to a specific quenching temperature (TQ) in order to adjust an appropriate amount of initial martensite (α’initial). Subsequently, the steel is reheated to a partitioning temperature (TP) in order to ensure C-partitioning from α’initial to remaining austenite (γremain) and thus retained austenite (RA) stabilization. After isothermal holding, the steel is quenched to room temperature (RT), in order to achieve a martensitic-austenitic microstructure, where the meta-stable RA undergoes the strain-induced martensitic transformation by the so-called transformation induced plasticity (TRIP) effect. This paper systematically investigates the influence of the Q&P process on the isothermal bainitic transformation (IBT) kinetics in a 0.2C-4.5Mn-1.3Al lean medium Mn steel by means of dilatometry. Therefore, the Q&P annealing approach was precisely compared to the TRIP-aided bainitic ferrite (TBF) process, where the samples were directly quenched to the temperature of the IBT after full austenitization. The results indicated an accelerated IBT for the Q&P samples, caused by the formation of α’initial during quenching below the martensite start (MS) temperature. Furthermore, a significant influence of the annealing parameters, such as TQ and TP, was observed with regard to the transformation behavior. For further characterization, light optical microscopy (LOM) and scanning electron microscopy (SEM) were applied, showing a microstructure consisting of a martensitic-bainitic matrix with finely distributed RA islands. Saturation magnetization method (SMM) was used to determine the amount of RA, which was primarily depending on TQ. Furthermore, the hardness according to Vickers revealed a remarkable impact of the annealing parameters, such as TQ and TP, on the predicted mechanical properties.

Distinct gene expression and secondary metabolite profiles for suboptimal mycorrhizal colonization in wild-type and the jasmonic acid deficient spr2 tomato mutant

A previous study with spr2 mutant tomato plants which are negatively affected in the synthesis of jasmonic acid (JA), suggested that JA regulates the arbuscular mycorrhizal fungi (AMF) colonization via the control of carbon (C) partitioning. Although this and other studies have suggested the important positive role played by JA in the regulation of AMF root colonization in tomato plants, it is currently unclear how different host plant genetic backgrounds affect gene expression and secondary metabolites variation during JA-dependent mycorrhization. In this study, wild type and spr2 mutant tomato plants having “low”, “medium” and “high” mycorrhizal colonization with Rhizophagus irregularis, were analyzed independently using transcriptomic and untargeted metabolomic approaches. The results obtained revealed that the degree of mycorrhizal colonization efficiency could be associated with contrasting expression levels of certain key genes controlling gibberellin signaling, ethylene biosynthesis and signaling, and synthesis of apocarotenoids, phenylpropanoids and tomatine, in roots. Only a few wound responsive genes, including JA signaling and biosynthesis genes, such as Prosystemin and JAZ2 were found to influence AMF colonization. Conversely, a systemic and JA-dependent induction/ repression of genes different from those altered in roots was detected in leaves of mycorrhizal plants. The most significant changes in metabolite abundance were detected in roots with reduced AMF colonization. Included among the latter were metabolites known to be associated with important aspects of AMF symbiosis, such as signaling, nutrient exchange and modulation of pathogen defense response. Αlpha-tomatine levels appeared to be an important factor, whose abundance negatively correlated wit h AMF colonization levels in tomato, suggesting a regulatory role for JA in the synthesis of this metabolite during the AMF symbiosis.