Examining the Osmotic Response of Acidihalobacter aeolianus after Exposure to Salt Stress

Acidihalobacter aeolianus is an acidophilic, halo-tolerant organism isolated from a marine environment near a hydrothermal vent, an ecosystem whereby levels of salinity and total dissolved salts are constantly fluctuating creating ongoing cellular stresses. In order to survive these continuing changes, the synthesis of compatible solutes—also known as organic osmolytes—is suspected to occur, aiding in minimising the overall impact of environmental instability. Previous studies on A. aeolianus identified genes necessary for the accumulation of proline, betaine and ectoine, which are known to act as compatible solutes in other halophilic species. In this study, the impact of increasing the osmotic stress as well as the toxic ion effect was investigated by subjecting A. aeolianus to concentrations of NaCl and MgSO4 up to 1.27 M. Exposure to high concentrations of Cl- resulted in the increase of ectC expression in log-phase cells with a corresponding accumulation of ectoine at stationary phase. Osmotic stress via MgSO4 exposure did not trigger the same up-regulation of ectC or accumulation of ectoine, indicating the transcriptionally regulated response against osmotic stress was induced by chloride toxicity. These findings have highlighted how the adaptive properties of halo-tolerant organisms in acidic environments are likely to differ and are dependent on the initial stressor.

Haloferax volcanii —a model archaeon for studying DNA replication and repair

The tree of life shows the relationship between all organisms based on their common ancestry. Until 1977, it comprised two major branches: prokaryotes and eukaryotes. Work by Carl Woese and other microbiologists led to the recategorization of prokaryotes and the proposal of three primary domains: Eukarya, Bacteria and Archaea. Microbiological, genetic and biochemical techniques were then needed to study the third domain of life. Haloferax volcanii , a halophilic species belonging to the phylum Euryarchaeota, has provided many useful tools to study Archaea, including easy culturing methods, genetic manipulation and phenotypic screening. This review will focus on DNA replication and DNA repair pathways in H. volcanii , how this work has advanced our knowledge of archaeal cellular biology, and how it may deepen our understanding of bacterial and eukaryotic processes.

Inhabited subsurface wet smectites in the hyperarid core of the Atacama Desert as an analog for the search for life on Mars

The modern Martian surface is unlikely to be habitable due to its extreme aridity among other environmental factors. This is the reason why the hyperarid core of the Atacama Desert has been studied as an analog for the habitability of Mars for more than 50 years. Here we report a layer enriched in smectites located just 30 cm below the surface of the hyperarid core of the Atacama. We discovered the clay-rich layer to be wet (a phenomenon never observed before in this region), keeping a high and constant relative humidity of 78% (aw 0.780), and completely isolated from the changing and extremely dry subaerial conditions characteristic of the Atacama. The smectite-rich layer is inhabited by at least 30 halophilic species of metabolically active bacteria and archaea, unveiling a previously unreported habitat for microbial life under the surface of the driest place on Earth. The discovery of a diverse microbial community in smectite-rich subsurface layers in the hyperarid core of the Atacama, and the collection of biosignatures we have identified within the clays, suggest that similar shallow clay deposits on Mars may contain biosignatures easily reachable by current rovers and landers.

La sal de la vida, vida en la sal: Producción de sal en paisajes de alto valor ecológico = The salt of life, life in salt: Salt production in high value landscapes

RESUMEN:Pese a que la sal se considera perniciosa para la vida, los paisajes de la sal y, más en concreto las salinas de evaporación solar, constituyen complejos sistemas biológicos de gran relevancia para la producción de sal de calidad. No se trata sólo de la biodiversidad de especies halófilas que pueda habitarla o de las estrategias fisiológicas que la biota de las salinas tenga para sobrevivir a la sal en el ambiente, sino del entramado de relaciones que entre ellos se producen. El delicado equilibrio entre la red trófica de las salinas con la actividad de producción artesanal de sal, hacen que sean paisajes vivos, que garantizan la conservación de sus valores naturales y culturales. La producción artesanal de sal se puede considerar así una actividad agrícola que resulta en un producto de alta calidad y respetuoso con el medionatural.ABSTRACT:Although salt is considered harmful to life, saltscapes and, more specifically, solar evaporation salinas, are complex biological systems of great relevance to the production of quality salt. It is not only a question of the biodiversity of halophilic species that may inhabit them or the physiological strategies that their biota have to survive the salt present in the environment, but also of the network of relationships between them. The delicate balance between the trophic network of the salinas and the artisanal salt production, make them living landscapes, which guarantee the conservation of their natural and cultural values. Artisanal salt production can thus be considered an agricultural activity that results in a high quality product that is respectful of the naturalenvironment.

Stress Reshapes the Physiological Response of Halophile Fungi to Salinity

(1) Background: Mechanisms of cellular and molecular adaptation of fungi to salinity have been commonly drawn from halotolerant strains and few studies in basidiomycete fungi. These studies have been conducted in settings where cells are subjected to stress, either hypo- or hyperosmotic, which can be a confounding factor in describing physiological mechanisms related to salinity. (2) Methods: We have studied transcriptomic changes in Aspergillus sydowii, a halophilic species, when growing in three different salinity conditions (No NaCl, 0.5 M, and 2.0 M NaCl). (3) Results: In this fungus, major physiological modifications occur under high salinity (2.0 M NaCl) and not when cultured under optimal conditions (0.5 M NaCl), suggesting that most of the mechanisms described for halophilic growth are a consequence of saline stress response and not an adaptation to saline conditions. Cell wall modifications occur exclusively at extreme salinity, with an increase in cell wall thickness and lamellar structure, which seem to involve a decrease in chitin content and an augmented content of alfa and beta-glucans. Additionally, three hydrophobin genes were differentially expressed under hypo- or hyperosmotic stress but not when the fungus grows optimally. Regarding compatible solutes, glycerol is the main compound accumulated in salt stress conditions, whereas trehalose is accumulated in the absence of salt. (4) Conclusions: Physiological responses to salinity vary greatly between optimal and high salt concentrations and are not a simple graded effect as the salt concentration increases. Our results highlight the influence of stress in reshaping the response of extremophiles to environmental challenges.

Diatoms from the Holocene sediments of lakes Pustoye and Chernoe (Nizhny Novgorod region)

The diatom analysis of the Holocene sediments of Pustoye and Chernoe lakes revealed 37 taxa of diatoms of two classes, five orders, eighteen families and twenty-five genera with a low degree of similarity of species composition (39%) and differences in the ecological priorities of the diatoms according to the leading abiotic factors – salinity and pH. Lake Chernoe is characterized by a greater number of species (26), the presence of halophilic species, as well as the prevalence of indicators of alkaline reaction of the environment. A feature of Lake Pustoye is the complete absence of halophilic forms and the predominance of species that prefer an acidic water reaction. A greater number of planktonic species was characteristic of Lake Chernoe due to the greater depths of this karst reservoir. According to the geographical location in these lakes, arcto-alpine species are noted.

Marine Fungi: Biotechnological Perspectives from Deep-Hypersaline Anoxic Basins

Deep-sea hypersaline anoxic basins (DHABs) are one of the most hostile environments on Earth. Even though DHABs have hypersaline conditions, anoxia and high hydrostatic pressure, they host incredible microbial biodiversity. Among eukaryotes inhabiting these systems, recent studies demonstrated that fungi are a quantitatively relevant component. Here, fungi can benefit from the accumulation of large amounts of organic material. Marine fungi are also known to produce bioactive molecules. In particular, halophilic and halotolerant fungi are a reservoir of enzymes and secondary metabolites with valuable applications in industrial, pharmaceutical, and environmental biotechnology. Here we report that among the fungal taxa identified from the Mediterranean and Red Sea DHABs, halotolerant halophilic species belonging to the genera Aspergillus and Penicillium can be used or screened for enzymes and bioactive molecules. Fungi living in DHABs can extend our knowledge about the limits of life, and the discovery of new species and molecules from these environments can have high biotechnological potential.

Back to the Salt Mines: Genome and Transcriptome Comparisons of the Halophilic Fungus Aspergillus salisburgensis and Its Halotolerant Relative Aspergillus sclerotialis

Salt mines are among the most extreme environments as they combine darkness, low nutrient availability, and hypersaline conditions. Based on comparative genomics and transcriptomics, we describe in this work the adaptive strategies of the true halophilic fungus Aspergillus salisburgensis, found in a salt mine in Austria, and compare this strain to the ex-type halotolerant fungal strain Aspergillus sclerotialis. On a genomic level, A. salisburgensis exhibits a reduced genome size compared to A. sclerotialis, as well as a contraction of genes involved in transport processes. The proteome of A. sclerotialis exhibits an increased proportion of alanine, glycine, and proline compared to the proteome of non-halophilic species. Transcriptome analyses of both strains growing at 5% and 20% NaCl show that A. salisburgensis regulates three-times fewer genes than A. sclerotialis in order to adapt to the higher salt concentration. In A. sclerotialis, the increased osmotic stress impacted processes related to translation, transcription, transport, and energy. In contrast, membrane-related and lignolytic proteins were significantly affected in A. salisburgensis.

Genome Sequence of the Halophilic Bacterium Kangiella spongicola ATCC BAA-2076T

The Gram-negative genus Kangiella contains a number of halophilic species that display high levels of iso-branched fatty acids. Kangiella spongicola was isolated from a marine sponge, Chondrilla nucula, from the Florida Keys in the United States.

Terrestrial Isopoda (Crustacea, Oniscidea) from the coasts of Costa Rica, with descriptions of three new species

Seven species of terrestrial isopods are recorded from the coasts of the Pacific and Caribbean sides of Costa Rica. Three species (Buchnerillo neotropicalis, Hawaiioscia nicoyaensis and Trichorhina biocellata) are described as new and two species (Tylos niveus and Armadilloniscus cf. caraibicus) are newly recorded from the country. The poorly known species T. niveus is also illustrated. At present the total number of terrestrial isopod species recorded from Costa Rica is 30. Interestingly four typical littoral halophilic species (Ligia baudiniana, Tylos wegeneri, T. niveus and A. cf. caraibicus) are present on both the Pacific coast of Costa Rica and on the coasts of the lands encompassed by the Caribbean Sea. With the sole exception of A. cf. caraibicus, no morphological differences could be detected from the Pacific and Caribbean populations of those species. Rev. Biol. Trop. 66(Suppl. 1): S187-S210. Epub 2018 April 01.