scholarly journals Identification of novel plant architecture mutants in barley

2021 ◽  
Author(s):  
Sina Mohammadi Aghdam ◽  
Babak Abdollahi Mandoulakani ◽  
Laura Rossini ◽  
Agnieszka Janiak ◽  
Salar Shaaf
Keyword(s):  
Plant Architecture ◽  
Genetic Factors ◽  
Agronomic Traits ◽  
Principal Component ◽  
Leaf Size ◽  
Tiller Number ◽  
Leaf Angle ◽  
Multiple Traits ◽  
Erect Leaves ◽  
High Tillering

AbstractIn grasses, biomass and grain production are affected by plant architecture traits such as tiller number, leaf size and orientation. Thus, knowledge regarding their genetic basis is a prerequisite for developing new improved varieties. Mutant screens represent a powerful approach to identify genetic factors underpinning these traits: the HorTILLUS population, obtained by mutagenesis of spring two-row cultivar Sebastian, is a valuable resource for this purpose in barley. In this study, 20 mutant families from the HorTILLUS population were selected and evaluated for tiller number, leaf angle and a range of other plant architecture and agronomic traits using an unreplicated field design with Sebastian as a check cultivar. Principal Component Analysis revealed strong relationships among number of tillers, upper canopy leaf angle, biomass and yield-related traits. Comparison to the Sebastian background revealed that most mutants significantly differed from the wild-type for multiple traits, including two mutants with more erect leaves and four mutants with increased tiller number in at least one phenological stage. Heatmap clustering identified two main groups: the first containing the two erect mutants and the second containing Sebastian and the high-tillering mutants. Among the high-tillering mutants, two showed significantly higher biomass and grain yield per plant compared to Sebastian. The selected mutants represent promising materials for the identification of genetic factors controlling tillering and leaf angle in barley.

scholarly journals Functional mutation allele mining of plant architecture and yield-related agronomic traits and characterization of their effects in wheat

BMC Genetics ◽  
2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Huijun Guo ◽  
Hongchun Xiong ◽  
Yongdun Xie ◽  
Linshu Zhao ◽  
Jiayu Gu ◽  
...  
Keyword(s):  
Plant Height ◽  
Phenotypic Variation ◽  
Plant Architecture ◽  
Agronomic Traits ◽  
Tiller Number ◽  
Grain Weight ◽  
Leaf Angle ◽  
Cytokinin Oxidase ◽  
Thousand Grain Weight ◽  
Wheat Mutant

Abstract Background Wheat mutant resources with phenotypic variation have been developed in recent years. These mutants might carry favorable mutation alleles, which have the potential to be utilized in the breeding process. Plant architecture and yield-related features are important agronomic traits for wheat breeders and mining favorable alleles of these traits will improve wheat characteristics. Results Here we used 190 wheat phenotypic mutants as material and by analyzing their SNP variation and phenotypic data, mutation alleles for plant architecture and yield-related traits were identified, and the genetic effects of these alleles were evaluated. In total, 32 mutation alleles, including three pleiotropic alleles, significantly associated with agronomic traits were identified from the 190 wheat mutant lines. The SNPs were distributed on 12 chromosomes and were associated with plant height (PH), tiller number, flag leaf angle (FLA), thousand grain weight (TGW), and other yield-related traits. Further phenotypic analysis of multiple lines carrying the same mutant allele was performed to determine the effect of the allele on the traits of interest. PH-associated SNPs on chromosomes 2BL, 3BS, 3DL, and 5DL might show additive effects, reducing PH by 10.0 cm to 31.3 cm compared with wild type, which means that these alleles may be favorable for wheat improvement. Only unfavorable mutation alleles that reduced TGW and tiller number were identified. A region on chromosome 5DL with mutation alleles for PH and TGW contained several long ncRNAs, and their sequences shared more than 90% identity with cytokinin oxidase/dehydrogenase genes. Some of the mutation alleles we mined were colocalized with previously reported QTLs or genes while others were novel; these novel alleles could also result in phenotypic variation. Conclusion Our results demonstrate that favorable mutation alleles are present in mutant resources, and the region between 409.5 to 419.8 Mb on chromosome 5DL affects wheat plant height and thousand grain weight.

Genetic diversity among accessions of Solanum aethiopicum L. groups based on morpho-agronomic traits

2012 ◽  
Vol 10 (3) ◽  
pp. 177-185 ◽  
Author(s):  
O. T. Adeniji ◽  
P. M. Kusolwa ◽  
S. O. W. M. Reuben
Keyword(s):  
Field Experiments ◽  
Agronomic Traits ◽  
Correlation Coefficients ◽  
Principal Component ◽  
Leaf Length ◽  
Multiple Traits ◽  
Discriminatory Ability ◽  
Fruit Length ◽  
Solanum Aethiopicum ◽  
Breeding Programmes

Solanum aethiopicum L. is indigenous to Africa and constitutes an important vegetable. Morpho-agronomic traits were used to study diversity among 44 accessions of S. aethiopicum groups to identify traits of high discriminatory ability and donor parents with specific or multiple traits for introgression and utilization in breeding programmes. Field experiments were conducted from 2008 to 2010. The principal component (PC) analysis of morpho-agronomic data indicated high discriminatory ability for fruit calyx length, fruit length and leaf length. On PC1, fruit length showed positive and significant correlation coefficients with leaf length, fruit calyx length and width. An independent association was recorded among fruit width, fruits per infructescence and seed yield (t/ha). Ordination (biplot) and grouping (dendrogram) revealed genetic variation and relatedness, phenotypic plasticity and geographical heterogeneity among the accessions within and among the clusters. Members of cluster 1 (group ‘c’) are a promising donor parent for multiple traits (earliness and fruit length), and members of group ‘b’ are superior for fruits per plant, fruits per infructescence and fruit infructescence per plant. Hybridization among distant clusters would provide an opportunity for bringing together gene constellations of diverse background. Earliness and fruit length were highly variable among the S. aethiopicum groups. The results are important for the breeding and selection of this crop.

scholarly journals OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice

2021 ◽  
Vol 12 ◽  
Author(s):  
Chen-li Zhu ◽  
Bao Xing ◽  
Shou-zhen Teng ◽  
Chen Deng ◽  
Zhen-yong Shen ◽  
...  
Keyword(s):  
Plant Architecture ◽  
Transcriptional Activity ◽  
Molecular Mechanisms ◽  
Agronomic Traits ◽  
Rice Yield ◽  
Negative Regulator ◽  
Leaf Angle ◽  
Rna Seq ◽  
Ems Mutagenesis ◽  
Leaf Inclination

Leaf angle is one of the most important agronomic traits in rice, and changes in leaf angle can alter plant architecture to affect photosynthetic efficiency and thus determine grain yield. Therefore, it is important to identify key genes controlling leaf angle and elucidate the molecular mechanisms to improve rice yield. We obtained a mutant rela (regulator of leaf angle) with reduced leaf angle in rice by EMS mutagenesis, and map-based cloning revealed that OsRELA encodes a protein of unknown function. Coincidentally, DENSE AND ERECT PANICLE 2 (DEP2) was reported in a previous study with the same gene locus. RNA-seq analysis revealed that OsRELA is involved in regulating the expression of ILI and Expansin family genes. Biochemical and genetic analyses revealed that OsRELA is able to interact with OsLIC, a negative regulator of BR signaling, through its conserved C-terminal domain, which is essential for OsRELA function in rice. The binding of OsRELA can activate the expression of downstream genes repressed by OsLIC, such as OsILI1, a positive regulator of leaf inclination in rice. Therefore, our results suggest that OsRELA can act as a transcriptional regulator and is involved in the regulation of leaf inclination by regulating the transcriptional activity of OsLIC.

scholarly journals The Copy Number Variation of OsMTD1 Regulates Rice Plant Architecture

2021 ◽  
Vol 11 ◽  
Author(s):  
Qing Liu ◽  
Jinke Xu ◽  
Yunhua Zhu ◽  
Yuxing Mo ◽  
Xue-Feng Yao ◽  
...  
Keyword(s):  
Copy Number Variation ◽  
Copy Number ◽  
Plant Architecture ◽  
Regulatory Element ◽  
Tiller Number ◽  
Leaf Angle ◽  
Rice Cultivars ◽  
Position Effects ◽  
Nearby Region ◽  
Number Variation

Copy number variation (CNV) may have phenotypic effects by altering the expression level of the gene(s) or regulatory element(s) contained. It is believed that CNVs play pivotal roles in controlling plant architecture and other traits in plant. However, the effects of CNV contributing to special traits remain largely unknown. Here we report a CNV involved in rice architecture by modulating tiller number and leaf angle. In the genome of Oryza sativa ssp. japonica cv. Nipponbare, we found a locus Loc_Os08g34249 is derived from a 13,002-bp tandem duplication in the nearby region of OsMTD1, a gene regulating tillering in rice. Further survey of 230 rice cultivars showed that the duplication occurred in only 13 japonica rice cultivars. Phenotypic investigation indicated that this CNV region may contribute to tiller number. Moreover, we revealed that OsMTD1 not only influences rice tiller number and leaf angle, but also represses pri-miR156f transcription in the CNV region. Intriguingly, this CNV performs function through both the dosage and position effects on OsMTD1 and pri-miR156f. Thus, our work identified a CNV and revealed a molecular regulatory basis for its effects on plant architecture, implying this CNV may possess importance and application potential in molecular breeding in rice.

ZmNF-YC13 regulates plant architecture in maize

2021 ◽  
Author(s):  
Xiupeng Mei ◽  
Jin Nan ◽  
Zikun Zhao ◽  
Shun Yao ◽  
Wenqin Wang ◽  
...  
Keyword(s):  
Cytochrome P450 ◽  
Plant Architecture ◽  
Agronomic Traits ◽  
Family Members ◽  
Maize Plant ◽  
Leaf Angle ◽  
Transcriptional Repressors ◽  
Maize Plants ◽  
Cytochrome P450 Family ◽  
Cluster Gene

Abstract Leaf angle (LA) and leaf orientation value (LOV) are critical agronomic traits for maize plant architecture. Many genes related to plant architecture have been identified in maize, but the functions of NF-Y members in regulating plant architecture have not been reported before. Here, we identified a regulator of maize plant architecture, ZmNF-YC13. ZmNF-YC13 was highly expressed in the leaf base zone of maize plants. ZmNF-YC13 overexpression plants showed upright leaves with narrow LA and larger LOV, while ZmNF-YC13 knockout plants had larger LA and smaller LOV, compared with wild-type plants. The changes in plant architecture were due to the changes of the expression levels of cytochrome P450 family members. ZmNF-YC13 can interact with two ZmNF-YBs (ZmNF-YB9 and ZmNF-YB10) of the LEC1 subfamily, and further recruit ZmNF-YA3 to form two NF-Y complexes. The two complexes can both activate the promoters of the transcriptional repressors (ZmWRKY76 and ZmBT2) and the promoters of PLA cluster gene can be repressed by ZmWRKY76 and ZmBT2 in maize protoplasts. We propose that ZmNF-YC13 functions as a transcriptional regulator and, together with ZmNF-YBs and ZmNF-YA3, affects plant architecture by regulating the expression of ZmWRKY76 and ZmBT2, which repress the expression of PLA clustered cytochrome P450 family members.

scholarly journals Supporting Physiological Trait for Indirect Selection for Grain Yield in Drought-Stressed Popcorn

Plants ◽  
2021 ◽  
Vol 10 (8) ◽  
pp. 1510
Author(s):  
Samuel Henrique Kamphorst ◽  
Gabriel Moreno Bernardo Gonçalves ◽  
Antônio Teixeira do Amaral Júnior ◽  
Valter Jário de Lima ◽  
Kátia Fabiane Medeiros Schmitt ◽  
...  
Keyword(s):  
Grain Yield ◽  
Multiple Regression ◽  
Morphological Traits ◽  
Vegetation Index ◽  
Agronomic Traits ◽  
Indirect Selection ◽  
Leaf Angle ◽  
Water Restriction ◽  
Leaf Greenness ◽  
Selection Of

The identification of traits associated with drought tolerance in popcorn is a contribution to support selection of superior plants under soil water deficit. The objective of this study was to choose morphological traits and the leaf greenness index, measured on different dates, to estimate grain yield (GY) and popping expansion (PE), evaluated in a set of 20 popcorn lines with different genealogies, estimated by multiple regression models. The variables were divided into three groups: morpho-agronomic traits—100-grain weight (GW), prolificacy (PR), tassel length (TL), number of tassel branches, anthesis-silking interval, leaf angle (FA) and leaf rolling (FB); variables related to the intensity of leaf greenness during the grain-filling period, at the leaf level, measured by a portable chlorophyll meter (SPAD) and at the canopy level, calculated as the normalized difference vegetation index (NDVI). The inbred lines were cultivated under two water conditions: well-watered (WW), maintained at field capacity, and water stress (WS), for which irrigation was stopped before male flowering. The traits GY (55%) and PE (28%) were most affected by water restriction. Among the morpho-agronomic traits, GW and PR were markedly reduced (>10%). Under dry conditions, the FA in relation to the plant stalk tended to be wider, the FB curvature greater and leaf senescence accelerated (>15% at 22 days after male flowering). The use of multiple regression for the selection of predictive traits proved to be a useful tool for the identification of groups of adequate traits to efficiently predict the economically most important features of popcorn (GY and PE). The SPAD index measured 17 days after male flowering proved useful to select indirectly for GY, while, among the morphological traits, TL stood out for the same purpose. Of all traits, PR was most strongly related with PE under WS, indicating its use in breeding programs. The exploitation of these traits by indirect selection is expected to induce increments in GY and PE.

Morph-specific correlations between floral traits in a distylous Ophiorrhiza napoensis (Rubiaceae) population in southern China

2001 ◽  
Vol 17 (5) ◽  
pp. 719-728 ◽  
Author(s):  
HIROSHI KUDOH ◽  
TAKASHI SUGAWARA ◽  
SUGONG WU ◽  
JIN MURATA
Keyword(s):  
Southern China ◽  
Principal Component ◽  
Corolla Tube ◽  
Floral Traits ◽  
Evergreen Forest ◽  
Tube Length ◽  
Multiple Traits ◽  
Floral Trait ◽  
Subtropical Evergreen Forest ◽  
Positive Correlations

Floral trait correlations were compared between the two flower morphs of a distylous Ophiorrhiza napoensis population in a subtropical evergreen forest at the Defu Natural Animal Preserve, Guangxi, China. Common principal component analyses indicated that overall patterns in correlations among floral traits were morph specific in the study population. Strong positive correlations (r > 0.9) between anther height and corolla-tube length were found in both morphs. Stigma height correlated positively with corolla-tube length in the long-styled morph (r = 0.843), but not in the short-styled morph (r = −0.018). Flower-morph-specific correlation suggests that natural selection by pollinators has moulded trait covariance among floral traits. Because morph-specific correlations are expressed as the patterns of within-morph variation among multiple traits, putative genes responsible for the stigma-corolla tube correlation should not link to the supergene for sex-organ reciprocity between the morphs, but their expression is limited in the long-styled morph.

scholarly journals To the question of the origin of the cultural assortment   of Dagestan apricots through assessing the variability   of leaf morphological characteristics

2019 ◽  
Vol 14 (3) ◽  
pp. 17-24
Author(s):  
D. M. Anatov ◽  
Z. M. Аsadulaev ◽  
R. M. Osmanov ◽  
K. I. Akhmedova
Keyword(s):  
Leaf Shape ◽  
Morphological Characteristics ◽  
Principal Component ◽  
Leaf Size ◽  
Shape Index ◽  
Botanical Garden ◽  
Mahalanobis Distances ◽  
Traditional Cultivars ◽  
Academy Of Sciences ◽  
Degree Of Similarity

Aim. The paper presents the results of assessment of the indigenous nature and  degree of similarity of apricot cultivars growing in the collection of the Mountain  Botanical Garden, Gunib, Dagestan, Russia based on a comparative analysis of the  variability of leaf morphological characteristics.   Material and Methods. The material assessed consisted of 33 apricot cultivars of  various ecological and geographical origins aggregated in the following groups: (a)  Dagestan – traditional cultivars; (b) Moscow ‐ selection from the Tsytsin Main Moscow Botanical Garden, Russian Academy of Sciences based on wild forms of Tajikistan and Kyrgyzstan; (c) European and (d) Asian ‐ from Central Asia, Tajikistan, China  and Altai.   Results. The closeness of Dagestan and European varieties in comparison with Asian  and Moscow varieties was shown. Most Dagestan (16 of 19) and European varieties  have round‐shaped leaves (leaf shape index 80‐ 100%), while those from Asia and  the Moscow Botanical Garden have leaves which are elongated elliptical and oval  (60‐80%). Using the method of principal component analysis (PCA), it was established that most cultivars of Dagestan origin have similar leaf shapes and sizes, of  which Tlama kurak (wide‐round), Hekobarsh (elongated) were distinguished by leaf  shape and Esdelik by leaf size.   Conclusion. Based on a discriminant analysis (Squared Mahalanobis Distances), it  was found that the indices of indicators of leaf attributes (width/length of leaf lamina; petiole length/length of lamina; apex angle/corner of leaf base) are more reliable criteria for differentiating apricot varieties into ecological and geographical  groups than their morphological characteristics.  

scholarly journals Assessment of wild tomato accessions for fruit yield, physicochemical and nutritional properties under a rain forest agro-ecology

2020 ◽  
Vol 1 (2) ◽  
pp. 1-11
Author(s):  
Dorcas Ibitoye ◽  
Adesike Kolawole ◽  
Roseline Feyisola
Keyword(s):  
Rain Forest ◽  
Agronomic Traits ◽  
Block Design ◽  
Principal Component ◽  
Fruit Yield ◽  
Soluble Solids ◽  
Forest Zone ◽  
Breeding Lines ◽  
Wild Tomato ◽  
Solanum Lycopersicum L

Tomato (Solanum lycopersicum L.) is a broadly consumed fruit vegetable globally. It is one of the research mandate vegetable of the National Horticultural Research Institute (NIHORT), Ibadan, Nigeria. The institute’s contains diverse collections of tomato accessions and wild relatives, without utilization information for the African continent. With the decline in diversity and potential of cultivars, a robust tomato breeding pipeline with broad genetic base that eliminates redundancy in the development of lines with desired horticultural traits is paramount. This study evaluated the mean performance and variations of thirteen wild tomato accessions obtained from the C.M. Rick Tomato Genetic Resource Center, University of California, Davis, USA, evaluated for agronomic, nutritional and physicochemical traits under a rain forest zone in Nigeria. The accessions were planted and grown in three replications with randomized complete block design. Agronomic traits, physicochemical and nutritional parameters were measured and analyzed. There was significant (P < 0.001) variation among accessions for all traits measured. Accession LA0130 was separated from others by cluster analysis and was outstanding for its unique attributes which include: fruit yield parameters, total soluble solids, acidity and content. The principal component analysis suggests fruit yield related traits, acidity and contributed most to the variation among the 13 accessions. The results obtained can be used to breed materials adapted to a rain forest . These wild tomato accessions have genes with desirable agronomic, nutritional and physicochemical traits that could be into breeding lines to improve commercial tomato varieties.

scholarly journals Identification of genetic factors controlling phosphorus utilization efficiency in wheat by genome-wide association study with principal component analysis

2020 ◽  
Author(s):  
Luqman Bin Safdar ◽  
Muhammad Jawad Umer ◽  
Fakhrah Almas ◽  
Siraj Uddin ◽  
Qurra-tul-Ain Safdar ◽  
...  
Keyword(s):  
Association Study ◽  
Candidate Genes ◽  
Genetic Factors ◽  
Genome Wide Association Study ◽  
Principal Component ◽  
Utilization Efficiency ◽  
Genome Wide Association ◽  
Genome Wide ◽  
P Utilization ◽  
P Utilization Efficiency

ABSTRACTDespite the economic importance of P utilization efficiency, information on genetic factors underlying this trait remains elusive. To address that, we performed a genome-wide association study in a spring wheat diversity panel ranging from landraces to elite varieties. We evaluated the phenotype variation for P utilization efficiency in controlled conditions and genotype variation using wheat 90K SNP array. Phenotype variables were transformed into a smaller set of uncorrelated principal components that captured the most important variation data. We identified two significant loci associated with both P utilization efficiency and the 1st principal component on chromosomes 3A and 4A: qPE1-3A and qPE2-4A. Annotation of genes at these loci revealed 53 wheat genes, among which 6 were identified in significantly enriched pathways. The expression pattern of these 6 genes indicated that TraesCS4A02G481800, involved in pyruvate metabolism and TCA cycle, had a significantly higher expression in the P efficient variety under limited P conditions. Further characterization of these loci and candidate genes can help stimulate P utilization efficiency in wheat.KEY MESSAGEWe report two new loci for P utilization efficiency on chromosomes 3A and 4A of wheat. The prioritized candidate genes at these loci can be investigated by molecular biology techniques to improve P efficiency in wheat and grass relatives.

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