Calcium Carbonate Mineralization: Involvement of Extracellular Polymeric Materials Isolated from Calcifying Bacteria

2012 ◽  
Vol 18 (4) ◽  
pp. 829-839 ◽  
Author(s):  
Claudia Ercole ◽  
Paola Bozzelli ◽  
Fabio Altieri ◽  
Paola Cacchio ◽  
Maddalena Del Gallo

AbstractThis study highlights the role of specific outer bacterial structures, such as the glycocalix, in calcium carbonate crystallizationin vitro. We describe the formation of calcite crystals by extracellular polymeric materials, such as exopolysaccharides (EPS) and capsular polysaccharides (CPS) isolated fromBacillus firmusandNocardia calcarea. Organic matrices were isolated from calcifying bacteria grown on synthetic medium—in the presence or absence of calcium ions—and their effect on calcite precipitation was assessed. Scanning electron microscopy observations and energy dispersive X-ray spectrometry analysis showed that CPS and EPS fractions were involved in calcium carbonate precipitation, not only serving as nucleation sites but also through a direct role in crystal formation. The utilization of different synthetic media, with and without addition of calcium ions, influenced the biofilm production and protein profile of extracellular polymeric materials. Proteins of CPS fractions with a molecular mass between 25 and 70 kDa were overexpressed when calcium ions were present in the medium. This higher level of protein synthesis could be related to the active process of bioprecipitation.

2012 ◽  
Vol 178-181 ◽  
pp. 676-679 ◽  
Author(s):  
Tao Duan ◽  
Wen Kun Zhu

The effects of temperature, pH, precipitation time, reactant concentration, the crystal formation additive on the yield of calcium carbonate precipitation induced by bacillus pasteurii were investigated through orthogonal test. The morphology and structure of the calcium carbonate were characterized by scanning electron microscopic (SEM), Fourier transform infrared spectroscopy (IR) and powder X-ray diffraction (XRD). The results showed that the optimum conditions of calcium carbonate precipitation induced by bacillus pasteurii were temperature of 40oC, pH of 8, precipitation time of 3 d, Ca2+ of 1.5 mol/L, and Mg2+ of 0.05 mol/L. The crystal of calcium carbonate was calcites or mixture of calcites and vaterite. Its morphology and packing density were changed by different external conditions.


2021 ◽  
Author(s):  
◽  
Saeedeh Afsar

<p>The strategies that both invertebrate and vertebrate organism use to produce organic-inorganic composite materials for different purposes such as mechanical support and protection for the body are fascinating. While extensive research has been done on understanding the basic principles of biomineral formation, mimicking the critical principles of the mechanisms of biomineralization in vitro and fully capturing the structural information and characteristics remain challenging issues for scientists.  Calcium is an essential element in biological systems. It plays a central role in the mineralization and maintenance of the skeleton as well as in fundamental physiological processes including growth and development in vertebrates. Within a biological organism calcium ions are stored, delivered, or released in the presence of different anions such as phosphate, carbonate and citrate. Competition between the different anions which interact with calcium ions in different hydrogel matrices leads to manipulation of the various composite materials produced such as bone and nacre. Soluble anionic acidic macromolecules associated with biominerals play a vital role in modulating the mineral morphology and hierarchy of the organized composite. Understanding the interaction between the constituent ions and the organic matrix is crucial if we are to make synthetic materials, the structure and properties of which replicate those of native biominerals, or materials that have the storage and/or release characteristics of foods, for example.  Carbohydrate-based hydrogels versus protein-based hydrogels are used here as scaffolds for the synthesis of calcium carbonate and calcium phosphate biominerals. Water soluble acidic additives are used to modulate the nucleation and growth of the minerals. In particular chitosan and gelatin hydrogel templates were used as the mineralization scaffolds. Three different mineralization methods were used: the Kitano, alternate soaking and McGrath methods. Monomeric vs. polymeric additives (acrylic acid, glutamic acid, aspartic acid and their corresponding polymers) were introduced into all systems in order to control the nucleation and growth of the so-formed minerals. The morphology, crystallinity, polymorphism and composition of the synthesized organic-inorganic composites were investigated. Analyses were carried out using a number of techniques including Scanning Electron Microscopy (SEM), Transmission Electron Microscopy (TEM), X-ray Diffraction (XRD), micro-Raman spectroscopy and solid-sate NMR.  In the case of calcium carbonate the morphology and crystallinity were more affected by the use of polymeric additives compared with their monomeric equivalents. In particular the calcium carbonate preferentially grew laterally within and on the periphery of the chitosan or gelatin hydrogel scaffold. This results from the formation of a polyelectrolyte complex between the chitosan or gelatin hydrogels and the added polymer. The presence of the polyelectrolyte complex modifies the nucleation of the mineral. Nanoparticles are preferentially formed which then aggregate together maintaining a lateral perspective with the scaffold.  In the case of calcium phosphate mostly spherical and platelet-shaped morphologies composed of amorphous calcium phosphate and poorly crystalline hydroxylapatite respectively were always formed within both chitosan and gelatin hydrogel scaffolds. pH was also found to be a key factor in controlling which polymorph of calcium phosphate precipitates. The crystallinity is influenced by the presence of additives for chitosan scaffold. For systems with added aspartic or polyaspartic acid platelet-shaped CaP forms. These crystals are more highly crystalline compared to those where predominately the porous spherical calcium phosphate morphology is observed which form when L-glutamic acid is added. In the presence of polymeric additives nanoparticles form which then aggregate to yield larger crystals. Such aggregation was preferentially observed for gelatin scaffolds.  Citrate anions are particularly important in calcium phosphate precipitation in bone. Biomimetic hydroxylapatite-chitosan and hydroxylapatite-gelatin nanocomposite were synthesized where citrate ions were used to control the size and crystallinity of the hydroxylapatite crystals. TEM data show that the size of the hydroxylapatite crystals decreases upon introducing citrate ions into the systems. Solid-state NMR dipolar dephasing data indicate the hydroxylapatite precipitation can be stabilized with 2.5 wt% sodium citrate with respect to the chitosan and gelatin mass.  The data included within this thesis illustrate that both gelatin and chitosan hydrogel scaffolds display similar ability in modulating calcium carbonate or calcium phosphate crystallization in the absence and presence of additives. The role of soluble acidic additives is significant in the formation of biominerals. These results reveal therefore the possibility that carbohydrate-based systems, which have many advantages over protein-based systems, could be used to provide more options for fabricating new implantable materials for humans and animals. The results from the combination of techniques used including XRD, SSNMR and TEM showed the possibility of in vitro synthesis of a bio-nanocomposite material in the presence of citrate similar to that of natural bone (in terms of composition and morphology). The achievement of this work demonstrates that new advanced materials with various composite structures and morphologies can be synthesized through a biomimetic biomineralization mechanism under ambient conditions similar to natural materials such as bone and nacre. These advancements have potential application in biomedical research and more specifically in fabrication of implantable materials.</p>


2003 ◽  
Vol 69 (8) ◽  
pp. 4901-4909 ◽  
Author(s):  
Frederik Hammes ◽  
Nico Boon ◽  
Johan de Villiers ◽  
Willy Verstraete ◽  
Steven Douglas Siciliano

ABSTRACT During a study of ureolytic microbial calcium carbonate (CaCO3) precipitation by bacterial isolates collected from different environmental samples, morphological differences were observed in the large CaCO3 crystal aggregates precipitated within bacterial colonies grown on agar. Based on these differences, 12 isolates were selected for further study. We hypothesized that the striking differences in crystal morphology were the result of different microbial species or, alternatively, differences in the functional attributes of the isolates selected. Sequencing of 16S rRNA genes showed that all of the isolates were phylogenetically closely related to the Bacillus sphaericus group. Urease gene diversity among the isolates was examined by using a novel application of PCR-denaturing gradient gel electrophoresis (DGGE). This approach revealed significant differences between the isolates. Moreover, for several isolates, multiple bands appeared on the DGGE gels, suggesting the apparent presence of different urease genes in these isolates. The substrate affinities (Km ) and maximum hydrolysis rates (V max) of crude enzyme extracts differed considerably for the different strains. For certain isolates, the urease activity increased up to 10-fold in the presence of 30 mM calcium, and apparently this contributed to the characteristic crystal formation by these isolates. We show that strain-specific calcification occurred during ureolytic microbial carbonate precipitation. The specificity was mainly due to differences in urease expression and the response to calcium.


2016 ◽  
Vol 18 (36) ◽  
pp. 25592-25600 ◽  
Author(s):  
Gábor Schuszter ◽  
Fabian Brau ◽  
A. De Wit

Upon injection of an aqueous solution of carbonate into a solution of calcium ions in the confined geometry of a Hele-Shaw cell, various calcium carbonate precipitation patterns are observed.


2021 ◽  
Author(s):  
◽  
Saeedeh Afsar

<p>The strategies that both invertebrate and vertebrate organism use to produce organic-inorganic composite materials for different purposes such as mechanical support and protection for the body are fascinating. While extensive research has been done on understanding the basic principles of biomineral formation, mimicking the critical principles of the mechanisms of biomineralization in vitro and fully capturing the structural information and characteristics remain challenging issues for scientists.  Calcium is an essential element in biological systems. It plays a central role in the mineralization and maintenance of the skeleton as well as in fundamental physiological processes including growth and development in vertebrates. Within a biological organism calcium ions are stored, delivered, or released in the presence of different anions such as phosphate, carbonate and citrate. Competition between the different anions which interact with calcium ions in different hydrogel matrices leads to manipulation of the various composite materials produced such as bone and nacre. Soluble anionic acidic macromolecules associated with biominerals play a vital role in modulating the mineral morphology and hierarchy of the organized composite. Understanding the interaction between the constituent ions and the organic matrix is crucial if we are to make synthetic materials, the structure and properties of which replicate those of native biominerals, or materials that have the storage and/or release characteristics of foods, for example.  Carbohydrate-based hydrogels versus protein-based hydrogels are used here as scaffolds for the synthesis of calcium carbonate and calcium phosphate biominerals. Water soluble acidic additives are used to modulate the nucleation and growth of the minerals. In particular chitosan and gelatin hydrogel templates were used as the mineralization scaffolds. Three different mineralization methods were used: the Kitano, alternate soaking and McGrath methods. Monomeric vs. polymeric additives (acrylic acid, glutamic acid, aspartic acid and their corresponding polymers) were introduced into all systems in order to control the nucleation and growth of the so-formed minerals. The morphology, crystallinity, polymorphism and composition of the synthesized organic-inorganic composites were investigated. Analyses were carried out using a number of techniques including Scanning Electron Microscopy (SEM), Transmission Electron Microscopy (TEM), X-ray Diffraction (XRD), micro-Raman spectroscopy and solid-sate NMR.  In the case of calcium carbonate the morphology and crystallinity were more affected by the use of polymeric additives compared with their monomeric equivalents. In particular the calcium carbonate preferentially grew laterally within and on the periphery of the chitosan or gelatin hydrogel scaffold. This results from the formation of a polyelectrolyte complex between the chitosan or gelatin hydrogels and the added polymer. The presence of the polyelectrolyte complex modifies the nucleation of the mineral. Nanoparticles are preferentially formed which then aggregate together maintaining a lateral perspective with the scaffold.  In the case of calcium phosphate mostly spherical and platelet-shaped morphologies composed of amorphous calcium phosphate and poorly crystalline hydroxylapatite respectively were always formed within both chitosan and gelatin hydrogel scaffolds. pH was also found to be a key factor in controlling which polymorph of calcium phosphate precipitates. The crystallinity is influenced by the presence of additives for chitosan scaffold. For systems with added aspartic or polyaspartic acid platelet-shaped CaP forms. These crystals are more highly crystalline compared to those where predominately the porous spherical calcium phosphate morphology is observed which form when L-glutamic acid is added. In the presence of polymeric additives nanoparticles form which then aggregate to yield larger crystals. Such aggregation was preferentially observed for gelatin scaffolds.  Citrate anions are particularly important in calcium phosphate precipitation in bone. Biomimetic hydroxylapatite-chitosan and hydroxylapatite-gelatin nanocomposite were synthesized where citrate ions were used to control the size and crystallinity of the hydroxylapatite crystals. TEM data show that the size of the hydroxylapatite crystals decreases upon introducing citrate ions into the systems. Solid-state NMR dipolar dephasing data indicate the hydroxylapatite precipitation can be stabilized with 2.5 wt% sodium citrate with respect to the chitosan and gelatin mass.  The data included within this thesis illustrate that both gelatin and chitosan hydrogel scaffolds display similar ability in modulating calcium carbonate or calcium phosphate crystallization in the absence and presence of additives. The role of soluble acidic additives is significant in the formation of biominerals. These results reveal therefore the possibility that carbohydrate-based systems, which have many advantages over protein-based systems, could be used to provide more options for fabricating new implantable materials for humans and animals. The results from the combination of techniques used including XRD, SSNMR and TEM showed the possibility of in vitro synthesis of a bio-nanocomposite material in the presence of citrate similar to that of natural bone (in terms of composition and morphology). The achievement of this work demonstrates that new advanced materials with various composite structures and morphologies can be synthesized through a biomimetic biomineralization mechanism under ambient conditions similar to natural materials such as bone and nacre. These advancements have potential application in biomedical research and more specifically in fabrication of implantable materials.</p>


2012 ◽  
Vol 249-250 ◽  
pp. 1053-1056
Author(s):  
How Ji Chen ◽  
Ming Der Yang ◽  
Shu Ken Lin ◽  
Chung Ho Huang

As one of the most popular materials used in construction, concrete is prone to superficial flaws, such as crack, due to the load-bearing and external environment. This research manually made cracks of 2 mm with 100 mm length and 30 mm depth on concrete vessels as specimens. Subsequently, bacteria, specifically B. pasteurii, was used in crack rehabilitation to enhance the compression strength of the repaired concrete. The mixture of microbes, urea medium, and urea-CaCl2 medium was added to a sludge and fine aggregate with a weight ratio of 0.6:1:1 to be the repairing material for crack rehabilitation. Crack rehabilitation was conducted by injected the mixture into the test samples after 90 days curing in saturated lime solution. In addition to the traditional test – compression test, scanning electron microscope (SEM) was used to examine the structure composition of the microbe-repaired concrete for calcium carbonate crystal formation. Various rectangular and polygonal crystals were observed in the SEM photographs of the microbe-repaired concrete samples with high bacterial concentrations demonstrated that bacteria can induce calcium carbonate precipitation to complete crack rehabilitation. The results prove that high concentration of bacterial broth induced a great amount of calcium carbonate precipitate and improved the concrete strength of the microbe-repaired samples.


2012 ◽  
Vol 1465 ◽  
Author(s):  
E. Weber ◽  
C. Guth ◽  
M. Eder ◽  
P. Bauer ◽  
E. Arzt ◽  
...  

ABSTRACTVaterite is one of the thermodynamically less stable polymorphs of calcium carbonate. Under ambient conditions it transforms into calcite, the most stable form of calcium carbonate. Organisms are able to stabilize minerals such as vaterite by means of organic molecules. The exact mechanisms how biomineralization proteins interact with metastable mineral phases are, however, less well understood. Many in vitro studies were performed using calcite as a model system. A deeper understanding of the interaction of organic molecules with metastable mineral phases would make them useful as a tool to control mineralization processes in vitro. In this study, we report on the co-precipitation of a natively soluble histidine-tagged GFP (green fluorecent protein) with a metastable vaterite phase and the subsequent insolubility of the fluorescent organic matrix in a 30μl calcium carbonate precipitation assay. The intrinsic fluorescence of GFP is conserved during the interaction with the mineral phase, indicating proper folding even in the insoluble state. This experiment can be extended to obtain deeper insights into some mechanistic models of biomineralization proteins by tracking native and modified GFP proteins microscopically during various stages of mineral precipitation and dissolution.


Nutrients ◽  
2020 ◽  
Vol 12 (11) ◽  
pp. 3397
Author(s):  
Domenico Trombetta ◽  
Antonella Smeriglio ◽  
Marcella Denaro ◽  
Roberto Zagami ◽  
Mara Tomassetti ◽  
...  

Background: Almond kernels contain phytochemicals with positive health effects in relation to heart disease, diabetes and obesity. Several studies have previously highlighted that almond cell wall encapsulation during digestion and particle size are factors associated with these benefits. In the present study, we have characterized almond oleosomes, natural oil droplets abundant in plants, and we have investigated their integrity during simulated gastrointestinal digestion. Methods: Oleosomes were visualized on the almond seed surface by imaging mass spectrometry analysis, and then characterized in terms of droplet size distribution by dynamic light scattering and protein profile by liquid chromatography high-resolution tandem mass spectrometry analysis. Results: The almond oleosomes’ distribution remained monomodal after in vitro mastication, whereas gastric and duodenal digestion led to a bimodal distribution, albeit characterized mainly by a prevalent population with a droplet size decrease related to a rearrangement of the protein profile. Oleosins, structural proteins found in plant oil bodies, persisted unchanged during simulated mastication, with the appearance of new prunin isoforms after gastric and duodenal digestion. Conclusions: The rearrangement of the protein profile could limit lipid bioaccessibility. The data improve our understanding of the behavior of almond lipids during gastrointestinal digestion, and may have implications for energy intake and satiety imparted by almonds.


AMB Express ◽  
2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Minyoung Hong ◽  
Indong Jang ◽  
Yongjun Son ◽  
Chongku Yi ◽  
Woojun Park

AbstractBio-concrete using bacterially produced calcium carbonate can repair microcracks but is still relatively expensive due to the addition of bacteria, nutrients, and calcium sources. Agricultural by-products and oyster shells were used to produce economical bio-concrete. Sesame meal was the optimal agricultural by-product for low-cost spore production of the alkaliphilic Bacillus miscanthi strain AK13. Transcriptomic dataset was utilized to compare the gene expressions of AK13 strain under neutral and alkaline conditions, which suggested that NaCl and riboflavin could be chosen as growth-promoting factors at alkaline pH. The optimal levels of sesame meal, NaCl, and riboflavin were induced with the central composite design to create an economical medium, in which AK13 strain formed more spores with less price than in commercial sporulation medium. Calcium nitrate obtained from nitric acid treatment of oyster shell powder increased the initial compressive strength of cement mortar. Non-ureolytic calcium carbonate precipitation by AK13 using oyster shell-derived calcium ions was verified by energy-dispersive X-ray spectroscopy and X-ray diffraction analysis. Stereomicroscope and field emission scanning electron microscopy confirmed that oyster shell-derived calcium ions, along with soybean meal-solution, increased the bacterial survival and calcium carbonate precipitation inside mortar cracks. These data suggest the possibility of commercializing bacterial self-healing concrete with economical substitutes for culture medium, growth nutrient, and calcium sources.


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