scholarly journals Genotype identification and phylogenetic analysis of Enterocytozoon bieneusi in farmed black goats (Capra hircus) from China’s Hainan Province

Parasite ◽  
2019 ◽  
Vol 26 ◽  
pp. 62 ◽  
Author(s):  
Huan-Huan Zhou ◽  
Xin-Li Zheng ◽  
Tian-Ming Ma ◽  
Meng Qi ◽  
Zong-Xi Cao ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Close Contact ◽  
Its Region ◽  
Enterocytozoon Bieneusi ◽  
Capra Hircus ◽  
Hainan Province ◽  
Minimal Risk ◽  
High Prevalence ◽  
Its Gene ◽  
Group 2

Enterocytozoon bieneusi is an important pathogen commonly found in humans and animals. Farmed animals with close contact to humans are important hosts of E. bieneusi. The role of goats in the transmission of E. bieneusi, however, remains unclear. In this study, 341 fresh fecal samples of black goats were collected from five locations in Hainan Province, China. Enterocytozoon bieneusi was identified and genotyped by sequences of the internal transcribed spacer (ITS) region. Phylogenetic analysis was performed by constructing a neighbor-joining tree of the ITS gene sequences. The average prevalence of E. bieneusi in black goats was 24.0% (82/341) with rates ranging from 6.3% (4/63) to 37.2% (32/86) across the locations (χ2 = 17.252, p < 0.01). Eight genotypes of E. bieneusi were identified, including six known genotypes: CHG5 (n = 47); CHG3 (n = 23); CHG2 (n = 4); CM21 (n = 3); D (n = 2); and AHG1 (n = 1), and two novel genotypes termed HNG-I (n = 1) and HNG-II (n = 1). In the phylogenetic tree, genotype D was clustered into Group 1 and the other identified genotypes were included in Group 2. This represents the first report identifying E. bieneusi in black goats from Hainan Province, with a high prevalence and wide occurrence demonstrated. The two new genotypes identified provide additional insights into the genotypic variations in E. bieneusi. Due to the small percentage of zoonotic genotypes in these animals, there is minimal risk of zoonotic transmission of E. bieneusi.

scholarly journals Molecular detection of Enterocytozoon bieneusi in farm-raised pigs in Hainan Province, China: infection rates, genotype distributions, and zoonotic potential

Parasite ◽  
2020 ◽  
Vol 27 ◽  
pp. 12 ◽  
Author(s):  
Huan-Huan Zhou ◽  
Xin-Li Zheng ◽  
Tian-Ming Ma ◽  
Meng Qi ◽  
Jing-Guo Zhou ◽  
...  
Keyword(s):  
Its Region ◽  
Small Subunit ◽  
Enterocytozoon Bieneusi ◽  
Human Infection ◽  
Hainan Province ◽  
Nested Polymerase Chain Reaction ◽  
High Prevalence ◽  
Stool Samples ◽  
Group 10 ◽  
High Degree

Enterocytozoon bieneusi is a zoonotic fungal pathogen with a high degree of host diversity that can parasitize many animals, including humans. Pigs may play an important role in the epidemiology of E. bieneusi as reservoir hosts. Nevertheless, the genotypes of E. bieneusi in pigs in China remain poorly understood. The aim of this study was to determine the prevalence of E. bieneusi infection amongst pigs raised on farms from four cities of Hainan Province, using nested polymerase chain reaction (PCR) of the partial small subunit of the ribosomal RNA gene, and to identify genotypes of E. bieneusi isolates based on sequence analysis of the ribosomal internal transcribed spacer (ITS) region. Among 188 stool samples, E. bieneusi was detected in 46.8% (88/188). Eight genotypes including four known (EbpA, CS-4, MJ14, and CHG19) and four novel (HNP-I – HNP-IV) genotypes were identified. Using phylogenetic analysis, genotypes EbpA, CS4, CHG19, HNP-III, and HNP-IV were clustered into zoonotic Group 1, while the remaining three genotypes (MJ14, HNP-I, and HNP-II) clustered into Group 10. The high prevalence of zoonotic genotypes of E. bieneusi among pigs suggests that pig farming is a potential source of human infection. Additionally, this is the first identification of genotypes in Group 10 in pigs indicating unique epidemic features of E. bieneusi in pigs in Hainan Province, the southernmost part of China.

scholarly journals Molecular-Based Detection of Enterocytozoon bieneusi in Farmed Masked Palm Civets (Paguma larvata) in Hainan, China: A High-Prevalence, Specificity, and Zoonotic Potential of ITS Genotypes

2021 ◽  
Vol 8 ◽  
Author(s):  
Wei Zhao ◽  
Guang-Xu Ren ◽  
Yu Qiang ◽  
Jiaqi Li ◽  
Jinkang Pu ◽  
...  
Keyword(s):  
Public Health ◽  
Phylogenetic Analysis ◽  
Its Region ◽  
Hainan Island ◽  
Enterocytozoon Bieneusi ◽  
Zoonotic Potential ◽  
Infection Rates ◽  
Group 12 ◽  
High Prevalence ◽  
Group 1

Enterocytozoon bieneusi is a microsporidian and zoonotic species. This study investigated the prevalence and distribution of E. bieneusi genotypes in farmed masked palm civets using nested PCR, as well as assessed their zoonotic potential by phylogenetic analysis of the ITS region of the rRNA region. Here, we collected 251 fecal specimens from farmed masked palm civets (Paguma larvata) from the Hainan Island, China. In total, 128 of 251 samples were positive for E. bieneusi, with an average infection rate of 51.0%. Seventeen genotypes were identified including 12 known genotypes—HNR-VI (n = 56), SHR1 (n = 45), SHW7 (n = 6), KIN-1 (n = 3), D (n = 3), New1 (n = 3), EbpC (n = 2), CHC5 (n = 1), CHG19 (n = 1), CHN4 (n = 1), EbpA (n = 1), and Henan-III (n = 1)—and five novel genotypes (HNPL-I to HNPL-II; one each). Phylogenetic analysis categorized these genotypes into two groups. Thirteen of them were members of the zoonotic group 1, and the remaining four genotypes were in group 12. This study has shown that the infection rates of E. bieneusi in masked palm civets from Hainan were relatively high and provide baseline data to control and prevent microsporidiosis in farm-related communities. Therefore, infections in masked palm civets with zoonotic genotypes D, EbpC, CHN4, EbpA, KIN-1, and Henan-III should be considered potential threats to public health.

scholarly journals Prevalence and Genetic Characterizations of Enterocytozoon Bieneusi in Captive Red Pandas (Ailurus Fulgens) In Sichuan Province, Southwestern China

2021 ◽  
Author(s):  
Yang-yang Zeng ◽  
Wan-Yu Meng ◽  
Song-Rui Liu ◽  
Jin-Chuan Yao ◽  
Ming He ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Infection Rate ◽  
Its Region ◽  
Sichuan Province ◽  
Enterocytozoon Bieneusi ◽  
Free Range ◽  
Red Panda ◽  
Polymerase Chain ◽  
Group 2 ◽  
Breeding Mode

Abstract Background: Enterocytozoon bieneusi (E. bieneusi) can infect a broad range of animals, and also the major pathogen for human microsporidiosis. The risk of zoonosis is uncertain because of limited research on red pandas. In addition, the semi-free range breeding enables the red panda direct contact with tourists. It is essential to investigate the prevalence and genotypes and to evaluate the safety of this breeding mode. Methods: Based on nested PCR, 198 fecal specimens were sampled from 6 zoos in Sichuan province from July 2020 to December 2020, to identify positive samples by amplifying the internal transcribed spacer (ITS) region of ribosomal RNA with specific primers. The correlation analysis of infection rate was carried out between different breeding modes (captive and semi-free-range). To cluster the identified genotypes with related genotypes to deduce zoonotically potential by phylogenetic analysis. In addition, Multilocus genotypes (MLGs) in ITS-positive samples were performed using the Multilocus Sequence Typing (MLST) tool.Results: The Polymerase Chain Reaction (PCR) results showed that 12.1% (24/198) samples were positive for E.bieneusi. The infection rates varied from 0% to 18.0% in different zoos and were significantly different in different breeding methods (χ2=5.442, P=0.0197). Genotypes D, SC02, and SCR1(novel) were clustered in zoonotic group 1, while genotype PL2 is clustered in group 2-like with uncertain risk by phylogenetic analysis. Furthermore, 3 distinct multilocus genotyping were formed in ITS-positive isolates.Conclusions: These results revealed the circulating of E. bieneusi in zoo red pandas, indicating that red pandas may be a source of human microsporidiosis and that semi-free range breeding mode as a risk factor increased the E. bieneusi infection rate and potential cross-species transmission.

scholarly journals Prevalence and Phylogenetic Analysis of Microsporidium Enterocytozoon bieneusi in Diarrheal Patients

Pathogens ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 128
Author(s):  
Manman Zang ◽  
Jinjin Li ◽  
Chun Tang ◽  
Songtao Ding ◽  
Wei Huang ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Sequence Analysis ◽  
Molecular Epidemiology ◽  
Epidemiological Study ◽  
Microscopic Examination ◽  
Nested Pcr ◽  
Its Region ◽  
Enterocytozoon Bieneusi ◽  
Severe Diarrhea ◽  
And Control

Enterocytozoon bieneusi can cause severe diarrhea in children and adults. However, in China, there are scant studies on E. bieneusi in diarrheal children and adults, with the exception of prevalence and genotyping data in a small number of cities including Hubei, Shanghai, and Heilongjiang. In this study, 196 fecal samples (n = 132 in Chongqing, n = 44 in Shandong, n = 20 in Hubei) were collected, including 91 from children and 105 from adults. Through microscopic examination, 19 positive samples (11 from children and 8 from adults) were detected. Using PCR examination, the internal transcriptional spacer (ITS) region was utilized by nested PCR to detect and characterize E. bieneusi. Twenty positive samples were detected, including 14 from children (≤11 years of age) and 6 from adults. According to the sequence analysis of ITS data, one known zoonotic (D) and seven novel (CQH5-11) genotypes were identified. This is the first molecular epidemiological study of E. bieneusi in diarrheal patients in different regions of China. Therefore, this study can provide useful information for the molecular epidemiology and control of E. bieneusi infection in humans in the future.

scholarly journals Molecular Detection and Genotyping of Enterocytozoon bieneusi in Black Goats (Capra hircus) in Yunnan Province, Southwestern China

Animals ◽  
2021 ◽  
Vol 11 (12) ◽  
pp. 3387
Author(s):  
Shi-Chen Xie ◽  
Yang Zou ◽  
Zhao Li ◽  
Jian-Fa Yang ◽  
Xing-Quan Zhu ◽  
...  
Keyword(s):  
Yunnan Province ◽  
Control Strategies ◽  
Pcr Amplification ◽  
Enterocytozoon Bieneusi ◽  
Southwestern China ◽  
Capra Hircus ◽  
Effective Control ◽  
Group 2 ◽  
And Gender ◽  
Group 1

Enterocytozoon bieneusi is a fungus-like protist that can parasitize in the intestines of humans and various animals causing a threat to public health. However, there has been no data for E. bieneusi prevalence and genotypes in black goats in Yunnan Province, Southwestern China. In this study, 907 fecal samples were collected from black goats in 5 counties from Yunnan Province. The prevalence and genotypes of E. bieneusi were examined by nested PCR amplification targeting the nuclear internal transcribed spacer (ITS). Multi-locus sequence typing (MLST) was used to further examine the potential occurrence of genetic segregation. The overall prevalence of E. bieneusi in black goats in Yunnan Province was 10.3% (93/907). Statistical analysis revealed that E. bieneusi prevalence was significantly associated with the region, age and gender of black goats (p < 0.001). Four new genotypes (CYG-1, CYG-2, CYG-3, CYG-4) and 11 known genotypes (CHG1, CHG2, CHG3, CHG5, CHG28, J, D, BEB6, Wildboar3, CD6, SDD1) of E. bieneusi were identified. At the microsatellite and minisatellite loci, 15, 2, 17, and 33 sequences were obtained, respectively, forming one new multi-locus genotype (MLG27). Phylogenetic analysis revealed that all 15 genotypes were clustered into group 1 and group 2, with zoonotic potential. This is the first report of E. bieneusi prevalence and genotypes in black goats in Yunnan Province, China. Effective control strategies and measures should be taken to reduce the risk of E. bieneusi transmission between black goats, other animals, and humans.

Occurrence and molecular identification of zoonotic microsporidia in pet budgerigars (Melopsittacus undulatus) in Turkey

2020 ◽  
Author(s):  
Didem Pekmezci ◽  
Gamze Yetismis ◽  
Cagatay Esin ◽  
Onder Duzlu ◽  
Zeynep Nurselin Colak ◽  
...  
Keyword(s):  
Current Knowledge ◽  
Companion Animals ◽  
Its Region ◽  
Molecular Data ◽  
Enterocytozoon Bieneusi ◽  
Avian Host ◽  
Wild Mammals ◽  
Pet Birds ◽  
Group 2 ◽  
Pcr Targeting

Abstract Encephalitozoon spp. and Enterocytozoon bieneusi are well-known microsporidian pathogens, recently classified as fungi, infecting humans and reptiles, mammals, and birds. Budgerigars (Melopsittacus undulates) are the most preferred captive pet birds in the households. Prevalence and molecular data on microsporidian species in budgerigars are scarce worldwide. The aim of the present study was to investigate the occurrence and genotypes of Encephalitozoon spp. and E. bieneusi in budgerigars, and to reveal their zoonotic potential. A total of 143 fecal samples were collected from owned healthy budgerigars in Turkey. Encephalitozoon spp. and E. bieneusi were examined by nested PCR targeting the ribosomal internal transcribed spacer (ITS) region and sequenced for identifying Encephalitozoon spp. and E. bieneusi. The overall prevalence of E. hellem and E. bieneusi was 14.7% (21/143) and 3.5% (5/143), respectively. Two genotypes of E. hellem were identified, including one known 1A (n = 18) and a novel TURK1B (n = 3). In addition, we determined two E. bieneusi genotypes, including one known N (n = 2) and a novel TURKM1 (n = 3). E. hellem 1A and novel TURK1B clustered as a sister taxon, and genotype N and novel TURKM1 genotypes fall into group 2 of E. bieneusi in the phylogenetic tree. Novel genotypes of E. hellem and E. bieneusi were described for the first time in the avian host. Moreover, E. bieneusi genotype N was first detected in avian hosts in the present study. This study contributes to the current knowledge on the molecular epidemiology and transmission dynamics of E. hellem and E. bieneusi. Lay Summary Spore producing microsporidia are ubiquitous, obligate, and intracellular fungus defined as emerging opportunistic pathogens of humans, livestock, companion animals, wild mammals, birds, and water worldwide. The occurrence of microsporidia in animals could be risky for human public health.

scholarly journals Genotyping and zoonotic potential of Enterocytozoon bieneusi in cattle farmed in Hainan Province, the southernmost region of China

Parasite ◽  
2020 ◽  
Vol 27 ◽  
pp. 65
Author(s):  
Xin-Li Zheng ◽  
Huan-Huan Zhou ◽  
Gangxu Ren ◽  
Tian-Ming Ma ◽  
Zong-Xi Cao ◽  
...  
Keyword(s):  
Enterocytozoon Bieneusi ◽  
Pcr Analysis ◽  
Hainan Province ◽  
Zoonotic Potential ◽  
Wide Range ◽  
Genotype Identification ◽  
Intestinal Pathogen ◽  
Important Host ◽  
Group 2 ◽  
Group 1

Enterocytozoon bieneusi is an intestinal pathogen that infects a wide range of species, including humans. Cattle constitute an important host for E. bieneusi; however, there is a scarcity of information on the prevalence and genotyping of E. bieneusi in cattle in the Hainan Province of China. In this study, PCR analysis of 314 fecal samples from cattle in six cities of Hainan was performed for genotype identification. The average prevalence of E. bieneusi in these animals was 9.9% (31/314), and ranged from 0.0% (0/12) to 20.5% (8/39). Five known genotypes – EbpC (n = 14), BEB4 (n = 12), J (n = 2), I (n = 1), and CHG5 (n = 1) – and a novel genotype: HNC-I (n = 1) – were identified. Genotypes EbpC and HNC-I were placed in zoonotic Group 1, and the remaining four genotypes (BEB4, J, I, and CHG5) were placed in Group 2. Since 93.5% of the genotypes found in the cattle (29/31) (EbpC, BEB4, J, and I) have previously been found in humans, these genotypes are probably involved in the transmission of microsporidiosis to humans.

scholarly journals Species diversity of Ganoderma causing foot rot of arecanut in southern dry tracts of Karnataka

2021 ◽  
Vol 42 (2) ◽  
pp. 192-202
Author(s):  
K.B. Palanna ◽  
◽  
S. Basavaraj ◽  
K.R. Shreenivasa ◽  
T. Narendrappa ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Species Diversity ◽  
Morphological Characteristics ◽  
Dna Amplification ◽  
Its Region ◽  
Universal Primers ◽  
Molecular Characteristics ◽  
Foot Rot ◽  
Binary Matrix ◽  
Its Gene

Aim: The present study was undertaken to study the morphological and molecular diversity of Ganoderma spp. causing foot rot of arecanut in dry tracts of Southern Karnataka. Methodology: A total of 20 samples isolated from diseased areca palms in three districts of Karnataka were identified based on morphological and molecular characteristics. Qualitative data of cultural characteristics were transformed into code and a binary matrix was generated. Total genomic DNA was isolated and ITS region was amplified using universal primers ITS1 and ITS4. PCR amplicon was directly sequenced and phylogenetic analysis was carried out. Results: The dendrogram generated from the cultural morphological characteristics showed clear variations among Ganoderma isolates causing foot rot. DNA amplification of Ganoderma isolates with fungal universal primers (ITS1 and ITS4) was observed at 650 bp in all isolates tested. Taxonomic correlation of isolates upon NCBI web proved that the isolates were genetically related to Ganoderma spp. with 89-99.49 per cent identity and confirmed the taxonomic identity of isolates used in this study. Interpretation: Phylogenetic analysis of arecanut isolates of southern Karnataka are distinct as evidenced by forming separate cluster. Based on gene homology, G. ryvardenni and G. casuarinicola are new species reported as causal agent of foot rot in arecanut from Karnataka. The ITS gene sequences of four isolates viz., AG3 (MN 784436), AG4 (MN 784437), AG11 (MN 784438), and AG20 (MN 78449) were deposited in NCBI gene bank. Key words: Arecanut, Foot rot, Ganoderma, Phylogeny, Species diversity

scholarly journals High Prevalence of Three Potyviruses Infecting Cucurbits in Oklahoma and Phylogenetic Analysis of Cucurbit Aphid-Borne Yellows Virus Isolated from Pumpkins

Pathogens ◽  
2021 ◽  
Vol 10 (1) ◽  
pp. 53
Author(s):  
Vivek Khanal ◽  
Harrington Wells ◽  
Akhtar Ali
Keyword(s):  
Phylogenetic Analysis ◽  
Mosaic Virus ◽  
Zucchini Yellow Mosaic Virus ◽  
Yellow Mosaic Virus ◽  
Watermelon Mosaic Virus ◽  
High Prevalence ◽  
The Us ◽  
Close Relationship ◽  
The Status ◽  
Low Incidence

Field information about viruses infecting crops is fundamental for understanding the severity of the effects they cause in plants. To determine the status of cucurbit viruses, surveys were conducted for three consecutive years (2016–2018) in different agricultural districts of Oklahoma. A total of 1331 leaf samples from >90 fields were randomly collected from both symptomatic and asymptomatic cucurbit plants across 11 counties. All samples were tested with the dot-immunobinding assay (DIBA) against the antisera of 10 known viruses. Samples infected with papaya ringspot virus (PRSV-W), watermelon mosaic virus (WMV), zucchini yellow mosaic virus (ZYMV), and cucurbit aphid-borne-yellows virus (CABYV) were also tested by RT-PCR. Of the 10 viruses, PRSV-W was the most widespread, with an overall prevalence of 59.1%, present in all 11 counties, followed by ZYMV (27.6%), in 10 counties, and WMV (20.7%), in seven counties, while the remaining viruses were present sporadically with low incidence. Approximately 42% of the infected samples were positive, with more than one virus indicating a high proportion of mixed infections. CABYV was detected for the first time in Oklahoma, and the phylogenetic analysis of the first complete genome sequence of a CABYV isolate (BL-4) from the US showed a close relationship with Asian isolates.

Molecular epidemiology of norovirus from patients with acute gastroenteritis in northwestern Spain

2014 ◽  
Vol 143 (2) ◽  
pp. 316-324 ◽  
Author(s):  
C. F. MANSO ◽  
J. L. ROMALDE
Keyword(s):  
Phylogenetic Analysis ◽  
Molecular Epidemiology ◽  
Genetic Drift ◽  
Acute Gastroenteritis ◽  
Age Groups ◽  
Capsid Gene ◽  
High Prevalence ◽  
High Incidence ◽  
Northwestern Spain

SUMMARYThe high incidence of norovirus (NoV) infections seems to be related to the emergence of new variants that evolved by genetic drift of the capsid gene. In this work, that represents a first effort to describe the molecular epidemiology of NoV in the northwest of Spain, a total of eight different NoV genotypes (GII.1, GII.3, GII.4, GII.6, GII.7, GII.12, GII.13, GII.14) were detected. The major genotypes observed were GII.4 (45·42%) and GII.14 (34·9%), being detected in all age groups. In addition, and although most of GII.4 sequences belonged to 2006b (7·2%) and 2010 (50·35%) variants, the presence of new NoV variants was observed. Phylogenetic analysis revealed that a high number of GII.4 sequences (35·24%) could be assigned to the newly emerging Sydney 2012 variant, even during late 2010. The high prevalence of NoV GII.14 observed in this study may indicate the emergence of this genotype in Spain.

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