scholarly journals Contribution of nitrogen absorption by rice plants and nitrogen immobilization enhanced by plant growth to the reduction of nitrogen loss through denitrification in rhizosphere soil

2000 ◽  
Vol 46 (3) ◽  
pp. 601-610 ◽  
Author(s):  
Ken-ichi Kakuda ◽  
Ho Ando ◽  
Tetsuya Konno
Keyword(s):  
Plant Growth ◽  
Rhizosphere Soil ◽  
Nitrogen Loss ◽  
Nitrogen Immobilization ◽  
Nitrogen Absorption ◽  
Rice Plants

scholarly journals Antimicrobial activity screening of rhizosphere soil bacteria from tomato and genome-based analysis of their antimicrobial biosynthetic potential

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Lu Zhou ◽  
Chunxu Song ◽  
Zhibo Li ◽  
Oscar P. Kuipers
Keyword(s):  
Antimicrobial Activity ◽  
Plant Growth ◽  
Disease Control ◽  
Pseudomonas Syringae ◽  
Rhizosphere Soil ◽  
Erwinia Carotovora ◽  
Gene Clusters ◽  
Vast Number ◽  
Tomato Disease

Abstract Background Tomato plant growth is frequently hampered by a high susceptibility to pests and diseases. Traditional chemical control causes a serious impact on both the environment and human health. Therefore, seeking environment-friendly and cost-effective green methods in agricultural production becomes crucial nowadays. Plant Growth Promoting Rhizobacteria (PGPR) can promote plant growth through biological activity. Their use is considered to be a promising sustainable approach for crop growth. Moreover, a vast number of biosynthetic gene clusters (BGCs) for secondary metabolite production are being revealed in PGPR, which helps to find potential anti-microbial activities for tomato disease control. Results We isolated 181 Bacillus-like strains from healthy tomato, rhizosphere soil, and tomato tissues. In vitro antagonistic assays revealed that 34 Bacillus strains have antimicrobial activity against Erwinia carotovora, Pseudomonas syringae; Rhizoctonia solani; Botrytis cinerea; Verticillium dahliae and Phytophthora infestans. The genomes of 10 Bacillus and Paenibacillus strains with good antagonistic activity were sequenced. Via genome mining approaches, we identified 120 BGCs encoding NRPs, PKs-NRPs, PKs, terpenes and bacteriocins, including known compounds such as fengycin, surfactin, bacillibactin, subtilin, etc. In addition, several novel BGCs were identified. We discovered that the NRPs and PKs-NRPs BGCs in Bacillus species are encoding highly conserved known compounds as well as various novel variants. Conclusions This study highlights the great number of varieties of BGCs in Bacillus strains. These findings pave the road for future usage of Bacillus strains as biocontrol agents for tomato disease control and are a resource arsenal for novel antimicrobial discovery.

scholarly journals Multifarious Indigenous Diazotrophic Rhizobacteria of Rice (Oryza sativa L.) Rhizosphere and Their Effect on Plant Growth Promotion

2022 ◽  
Vol 8 ◽  
Author(s):  
Mohammad Imran Mir ◽  
Bee Hameeda ◽  
Humera Quadriya ◽  
B. Kiran Kumar ◽  
Noshin Ilyas ◽  
...  
Keyword(s):  
Plant Growth ◽  
Phosphate Solubilization ◽  
Nitrogenase Activity ◽  
Hydrolytic Enzymes ◽  
Seed Vigor ◽  
Bacterial Isolates ◽  
Diazotrophic Bacteria ◽  
Pgp Traits ◽  
Rice Plants

A diverse group of rhizobacteria persists in the rhizospheric soil, on the surface of roots, or in association with rice plants. These bacteria colonize plant root systems, enhance plant growth and crop yield. Indigenous rhizobacteria are known to promote soil health, grain production quality and serve as sustainable bioinoculant. The present study was aimed to isolate, identify and characterize indigenous plant growth promoting (PGP) diazotrophic bacteria associated with the rhizosphere of rice fields from different areas of Jammu and Kashmir, India. A total of 15 bacteria were isolated and evaluated for various PGP traits, antagonistic activity against phytopathogens, production of hydrolytic enzymes and biofilm formation under in-vitro conditions. The majority of the isolated bacteria were Gram-negative. Out of 15 bacterial isolates, nine isolates produced IAA (12.24 ± 2.86 to 250.3 ± 1.15 μg/ml), 6 isolates exhibited phosphate solubilization activity (36.69 ± 1.63 to 312.4 ± 1.15 μg/ml), 7 isolates exhibited rock phosphate solubilization while 5 isolates solubilized zinc (10–18 mm), 7 isolates showed siderophore production, 8 isolates exhibited HCN production, 6 isolates exhibited aminocyclopropane-1-carboxylate (ACC) deaminase activity, 13 isolates exhibited cellulase activity, nine isolates exhibited amylase and lipase activity and six isolates exhibited chitinase activity. In addition, 5 isolates showed amplification with the nifH gene and showed a significant amount of nitrogenase activity in a range of 0.127–4.39 μmol C2H4/mg protein/h. Five isolates viz., IHK-1, IHK-3, IHK-13, IHK-15 and IHK-25 exhibited most PGP attributes and successfully limited the mycelial growth of Rhizoctonia solani and Fusarium oxysporum in-vitro. All the five bacterial isolates were identified based on morphological, biochemical and 16S rDNA gene sequencing study, as Stenotrophomonas maltophilia, Enterobacter sp., Bacillus sp., Ochrobactrum haematophilum and Pseudomonas aeruginosa. Rice plants developed from seeds inoculated with these PGP strains individually had considerably higher germination percentage, seed vigor index and total dry biomass when compared to control. These findings strongly imply that the PGP diazotrophic bacteria identified in this work could be employed as plant growth stimulators in rice.

scholarly journals Effect of rice plant growth on denitrification in rhizosphere soil

1999 ◽  
Vol 45 (3) ◽  
pp. 599-607 ◽  
Author(s):  
Ken-ichi Kakuda ◽  
Ho Ando ◽  
Masakado Harayama
Keyword(s):  
Plant Growth ◽  
Rice Plant ◽  
Rhizosphere Soil

Analysis of bacterial communities in rhizosphere soil of healthy and diseased cotton (Gossypium sp.) at different plant growth stages

2010 ◽  
Vol 339 (1-2) ◽  
pp. 447-455 ◽  
Author(s):  
Yan Zhang ◽  
Bing-Hai Du ◽  
Zhi-gang Jin ◽  
Zheng-hua Li ◽  
Hong-ning Song ◽  
...  
Keyword(s):  
Plant Growth ◽  
Bacterial Communities ◽  
Rhizosphere Soil ◽  
Growth Stages ◽  
Plant Growth Stages

scholarly journals Effects of Two Trichoderma Strains on Plant Growth, Rhizosphere Soil Nutrients, and Fungal Community of Pinus sylvestris var. mongolica Annual Seedlings

Forests ◽  
2019 ◽  
Vol 10 (9) ◽  
pp. 758 ◽  
Author(s):  
Saiyaremu Halifu ◽  
Xun Deng ◽  
Xiaoshuang Song ◽  
Ruiqing Song
Keyword(s):  
Enzyme Activity ◽  
Community Structure ◽  
Plant Growth ◽  
Soil Nutrients ◽  
Fungal Community ◽  
Rhizosphere Soil ◽  
Soil Nutrient ◽  
Nutrient Content ◽  
Root Structure ◽  
Soil Nutrient Content

Trichoderma spp. are proposed as major plant growth-promoting fungi that widely exist in the natural environment. These strains have the abilities of rapid growth and reproduction and efficient transformation of soil nutrients. Moreover, they can change the plant rhizosphere soil environment and promote plant growth. Pinus sylvestris var. mongolica has the characteristics of strong drought resistance and fast growth and plays an important role in ecological construction and environmental restoration. The effects on the growth of annual seedlings, root structure, rhizosphere soil nutrients, enzyme activity, and fungal community structure of P. sylvestris var. mongolica were studied after inoculation with Trichoderma harzianum E15 and Trichoderma virens ZT05, separately. The results showed that after inoculation with T. harzianum E15 and T. virens ZT05, seedling biomass, root structure index, soil nutrients, and soil enzyme activity were significantly increased compared with the control (p < 0.05). There were significant differences in the effects of T. harzianum E15 and T. virens ZT05 inoculation on the growth and rhizosphere soil nutrient of P. sylvestris var. mongolica (p < 0.05). For the E15 treatment, the seedling height, ground diameter, and total biomass of seedlings were higher than that those of the ZT05 treatment, and the rhizosphere soil nutrient content and enzyme activity of the ZT05 treatment were higher than that of the E15 treatment. The results of alpha and beta diversity analyses showed that the fungi community structure of rhizosphere soil was significantly different (p < 0.05) among the three treatments (inoculated with T. harzianum E15, T. virens ZT05, and not inoculated with Trichoderma). Overall, Trichoderma inoculation was correlated with the change of rhizosphere soil nutrient content.

THE INITIATION OF THE RHIZOSPHERE MYCOFLORA OF DWARF BEAN PLANTS

1967 ◽  
Vol 13 (5) ◽  
pp. 439-446 ◽  
Author(s):  
A. Thomas ◽  
D. Parkinson
Keyword(s):  
Seed Germination ◽  
Plant Growth ◽  
Rhizosphere Soil ◽  
Trichoderma Viride ◽  
Soil Washing ◽  
Soil Samples ◽  
Early Stages ◽  
Bean Plants ◽  
Humicola Grisea ◽  
Dwarf Bean

An attempt was made, using the soil-washing box technique, to obtain detailed information about the initiation of the rhizosphere mycoflora of dwarf bean seedlings.Tabulated information of the fungi isolated from washed non-rhizosphere soil and washed rhizosphere soil from plants during the first 20 days after seed germination is presented together with data of the fungi isolated from the waters in which these soil samples were washed. These data are discussed in relation to previous observations of fungi isolated from rhizospheres by other methods.The results obtained revealed that in the early days after seed germination the rhizosphere mycoflora was qualitatively similar to that of the non-rhizosphere soil. However, a number of distinct differences were discernible between the rhizosphere and non-rhizosphere populations even at these early stages of plant growth, namely that Cylindrocarpon radicicola, Humicola grisea, and a sterile sclerotial form (W1) were isolated with increased frequency from the rhizosphere, whereas Trichoderma viride was consistently isolated less frequently from the rhizosphere than from non-rhizosphere soil.

scholarly journals Genome Sequence of Pantoea sp. Strain 1.19, Isolated from Rice Rhizosphere, with the Capacity To Promote Growth of Legumes and Nonlegumes

2017 ◽  
Vol 5 (30) ◽  
Author(s):  
Esaú Megías ◽  
Fábio Bueno Reis Junior ◽  
Renan Augusto Ribeiro ◽  
Manuel Megías ◽  
Francisco Javier Ollero ◽  
...  
Keyword(s):  
Quorum Sensing ◽  
Plant Growth ◽  
Genome Sequence ◽  
Biotechnological Potential ◽  
Coding Sequences ◽  
Homoserine Lactones ◽  
Rice Plants ◽  
Rice Rhizosphere ◽  
Plant Growth Promoting ◽  
Growth Promoting

ABSTRACT Pantoea sp. 1.19, a plant growth-promoting bacterium (PGPB), was isolated from the rhizosphere of rice plants in Spain. Its genome, estimated at 3,771,065 bp, encodes 3,535 coding sequences (CDSs), carrying genes for synthesis of auxins, homoserine lactones, enzymes, siderophores, and quorum sensing. Several CDSs emphasize its biotechnological potential as an agriculture inoculant.

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