scholarly journals Isolation and identification of nitrifying bacteria from tilapia (Oreochromis sp.) pond in Sleman Yogyakarta Indonesia

2021 ◽  
Vol 919 (1) ◽  
pp. 012054
Author(s):  
I Aswiyanti ◽  
I Istiqomah ◽  
A Isnansetyo
Keyword(s):  
Molecular Analysis ◽  
Fermentation Medium ◽  
Nitrifying Bacteria ◽  
Future Application ◽  
Bacterial Identification ◽  
Biochemical Tests ◽  
Isolation And Identification ◽  
Bacterial Fermentation ◽  
Nitrification Activity ◽  
Bacterial Characterization

Abstract This research aims to isolate and identify autochtonous nitrifying bacteria from tilapia pond in Sleman Yogyakarta Indonesia for future application in aquaculture practices in the region. Bacteria were isolated using a nitrification medium. Bacterial characterization was carried out by non-pathogenic test to tilapia (Oreochromis sp.), and nitrification activity test in a single bacterial fermentation medium for 9 days. Bacterial identification was carried out based on the colony and cell morphologies, biochemical tests, and molecular analysis using the 16S rRNA and gyrB genes. A total of 15 isolates of nitrifying bacteria were obtained. Four non-pathogenic isolates obtained the highest nitrification activity on the sixth day of incubation, with nitrate production of 17.26-21.54 ppm. Two selected bacteria, isolates A2 and A3, have colony morphology that is milky white, smooth surface, circular shape, entire edge, and convex elevation. Both bacteria are short rods, Gram-negative, non-motile, produce catalase, fermenting glucose, sucrose, and lactose, and do not produce oxidase, ornithine decarboxylase, indole, and H2S. Molecular analysis showed that the two isolates had the highest similarity (99.28% and 99.34%) to Klebsiella spp.

scholarly journals Determination of some virulence factors of Citrobacter freundii isolated from Iraqi patients

2021 ◽  
pp. 3358-3365
Author(s):  
Asmaa Easa Mahmood ◽  
Amidah Ali Atyah
Keyword(s):  
Urinary Tract Infection ◽  
Virulence Factors ◽  
Susceptibility Testing ◽  
Citrobacter Freundii ◽  
Beta Lactamase ◽  
Bacterial Identification ◽  
Biochemical Tests ◽  
Isolation And Identification ◽  
Extended Spectrum Beta Lactamase

      This study included the isolation and identification of Citrobacter freundii from 220 samples collected from inpatients and outpatients suffering from urinary tract infection (UTI) and identified at the laboratory of the General Samarra Hospital in Samarra City, Iraq. The study was conducted to investigate some of the virulence factors produced by C. freundii. The results showed that 67 isolates were  belonging to the C. freundii, with a rate of  30.45%. Twenty eight samples were from inpatients (41.8%)  and 39 samples were from outpatients. The bacterial identification was based on cultural and biochemical tests and confirmed by using VITEK2 compact system. Virulence factor results showed that all isolates were not blood hydrolyzing whereas they produced protease. Seven isolates (10.4%) produced biofilm, five from inpatients and two from outpatients,  at rates of 17.8%  and 5.1%, respectively. The results showed that 17 (25.4%) of the pathogenic isolates were β-lactamase producers, as determined by the iodometric  method, twelve of them (17.9%) were from inpatients and 5 (7.5%) from outpatients.  Four isolates of C. freundii produced Extended Spectrum Beta-lactamase (ESβL) enzymes, three from inpatients and one from outpatients, with ratios of 4.5% and 1.4%, respectively. Also, the via B gene, which is responsible for virulence factors, was investigated using PCR. The results showed that 12 isolates from inpatients and 4 isolates from outpatients were harboring this gene. The antimicrobial susceptibility testing by Kirby-Bauer’s method showed that all isolates that produced β-lactamase were resistant to antibiotics.

The use of antibiotic resistance profiling as a means of tracing sources of fecal contamination in source waters

2010 ◽  
Vol 10 (2) ◽  
pp. 209-215
Author(s):  
M. S. Mthembu ◽  
P. T. Biyela ◽  
T. G. Djarova ◽  
A. K. Basson
Keyword(s):  
Antibiotic Resistance ◽  
Municipal Wastewater ◽  
Fecal Contamination ◽  
Source Tracking ◽  
Human Consumption ◽  
Biochemical Tests ◽  
Isolation And Identification ◽  
E Coli ◽  
Intestinal Pathogens ◽  
Source Waters

Fecal contamination of source waters and its associated intestinal pathogens continues to pose risks to public health although the extent and effect of microbial contamination of source waters gets very little attention in designing treatment plants in most developing countries. Coliform counts give an indication of the overall bacterial contamination of water and thus its safety for human consumption. However, their presence fails to provide information about the source of fecal contamination which is vital to managing fecal contamination problems in surface waters. This study explored the use of multiple antibiotic resistance (MAR) indexing as means of differentiating E. coli isolates from different sources. A total of 322 E. coli isolates were obtained from municipal wastewater and from fecal samples from domestic and wild animals. Conventional culture methods and standard chemical and biochemical tests were used for isolation and identification of E. coli. Isolates were assayed against 10 antibiotics using the micro-dilution technique. The results obtained generated antibiotic resistance profiles which were used to statistically group the isolates into different subsets. Correct source classification was obtained for 60% of human-derived and 95% non-human-derived E. coli respectively. These results indicate the validity of the usefulness of MAR indexing as a method of bacterial source tracking.

scholarly journals Observation of Vibrio mediterranei (Pujalte and Garay 1986) / Vibrio shiloi (Kushmaro et al. 2001) bacteria from skin ulcers of the cultured sea cucumber Holothuria poli (Delle Chiaje, 1823)

2021 ◽  
Vol 38 (3) ◽  
pp. 393-397
Author(s):  
Mustafa Tolga Tolon ◽  
Ulviye Karacalar ◽  
Caner Şirin
Keyword(s):  
Sea Cucumber ◽  
Reference Data ◽  
Biochemical Tests ◽  
Isolation And Identification ◽  
Skin Ulceration ◽  
Skin Ulcers ◽  
Vibrio Shiloi ◽  
Serious Disease ◽  
Dominant Bacteria ◽  
Major Pathogens

Skin ulcer syndrome is frequently reported as a serious disease affecting the health, growth and mortality of stocks in sea cucumber aquaculture. In this study, bacteria isolated predominantly from skin ulcers of sea cucumber Holothuria poli (Delle Chiaje, 1823), a new candidate for aquaculture in the Mediterranean, were investigated. Morphological and biochemical tests, and molecular analysis methods were used to examine the dominant bacteria in the lesions of H. poli showing skin ulceration, peristome tumour and visceral ejection symptoms in rearing tanks. Present study is the first report for isolation and identification of Vibrio mediterranei (Pujalte and Garay 1986) (called also Vibrio shiloi Kushmaro et al. 2001) as a predominant gram-negative bacterium in the skin ulcers of H. poli. Reference data provided from the present study would lead to understand possible major pathogens causing skin ulceration syndrome and is crucial for the prophylaxis and treatment of such disease in holothuriculture.

scholarly journals Isolation and identification of phosphate solubilizing bacteria and evaluate its effect on of Mung bean (Vigna radita [L.] R.Wilczek) growth

2019 ◽  
Vol 60 (5) ◽  
pp. 985-995
Author(s):  
Yusur Ramzi ◽  
Hutaf A. A. Alsalim
Keyword(s):  
Plant Growth ◽  
Bacillus Cereus ◽  
Mung Bean ◽  
Phosphate Solubilization ◽  
Growth Promotion ◽  
Hydrolytic Enzymes ◽  
Phosphate Solubilizing Bacteria ◽  
Biochemical Tests ◽  
Isolation And Identification ◽  
Phosphate Solubilizing

Sixteen soil samples were collected from wheat, barley and yellow corn rhizosphere in Abu-Ghraib, Aqraqof, Latifieh,Tarmiah, Jadriya and  of Agriculture in Baghdad university/ Baghdad city. The results found nine phosphate solubilizing bacteria (PSB) isolates (Y1, Y2, Y3, Y4, Y5, Y6, Y7, Y8, Y9), formed clear zones on National Botanical Research Institute's (NBRIP) agar. The solubility index (SI) of PSB isolates ranged from 2.00 to 3.66. Y4 have the highest SI (3.66) followed by Y3 and Y6 (3.33). Phosphate solubilization abilities varying from (20.10-39.00 μg.ml-1), Y4 was the highest (39.00 μg.ml-1) followed by Y3 (37.00μg.ml-1). The results of hydrolytic enzymes production showed that almost all nine isolates are able to produce protease and pectinase, while Y1 and Y2 showed negative results in cellulase production. Maximum ability for hydrogen cyanide (HCN) and indole acetic acid (IAA) production were showed byY3 and Y4 isolates. The isolate Y4 was found to be the most efficient isolate, so it was selected identified as Bacillus cereus using biochemical tests confirmed by VITEC 2 compact system. The results of High performance liquid chromatography (HPLC) revealed that Bacillus cereus produce oxalic acid (2.996), citric acid (9.117) and malic acid (3.734). Bacillus cereus (Y4) enhanced the growth of mung bean plants. A significant increase in branches number (12.33), plant length (83.0cm), fresh weight (27.25 g) and dry weight (1.427g) were obtained compared with control treatments. The main objective of this study is to isolate PSB and evaluate their roles in plant growth promotion. The results showed the high phosphate solubilization efficiency of PSB isolates and the identified isolates was found to be good enough for plant growth promoting.

scholarly journals Citrobacter braakii Yield False-Positive Identification as Salmonella, a Note of Caution

Foods ◽  
2021 ◽  
Vol 10 (9) ◽  
pp. 2177
Author(s):  
Joanna Pławińska-Czarnak ◽  
Karolina Wódz ◽  
Magdalena Kizerwetter-Świda ◽  
Tomasz Nowak ◽  
Janusz Bogdan ◽  
...  
Keyword(s):  
False Positive ◽  
Salmonella Enterica ◽  
Meat Products ◽  
Animal Origin ◽  
Biochemical Tests ◽  
Salmonella Spp ◽  
Isolation And Identification ◽  
False Positive Identification ◽  
Food Of Animal Origin ◽  
Meat Samples

Background: Globally, Salmonella enterica is one of the leading causes of foodborne illness in humans. Food of animal origin is obligatorily tested for the presence of this pathogen. Unfortunately, in meat and meat products, this is often hampered by the presence of background microbiota, which may present as false-positive Salmonella. Methods: For the identification of Salmonella spp. from meat samples of beef, pork, and poultry, the authorized detection method is PN-EN ISO 6579-1:2017-04 with the White–Kauffmann–Le Minor scheme, two biochemical tests: API 20E and VITEK II, and a real-time PCR-based technique. Results: Out of 42 presumptive strains of Salmonella, 83.3% Salmonella enterica spp. enterica, 14.3% Citrobacter braakii, and 12.4% Proteus mirabilis were detected from 180 meat samples. Conclusions: Presumptive strains of Salmonella should be identified based on genotypic properties such as DNA-based methods. The aim of this study was the isolation and identification of Salmonella spp. from miscellaneous meat sorts: beef, pork, and poultry.

scholarly journals SKRINING BAKTERI ANTAGONIS RALSTONIA SP., PENYEBAB PENYAKIT LAYU BAKTERI PISANG DI LAMPUNG

2007 ◽  
Vol 7 (2) ◽  
pp. 100-110
Author(s):  
Titik Nur Aeny ◽  
Radix Suharjo ◽  
Subli Mujim
Keyword(s):  
Bacterial Wilt ◽  
Plant Disease ◽  
Hypersensitive Reaction ◽  
Soil Samples ◽  
Causal Agent ◽  
Antagonistic Bacteria ◽  
Bacterial Identification ◽  
Biochemical Tests ◽  
Colony Color

Screening on Antagonistic Bacteria of Ralstonia sp., the Causal Agent of Banana Bacterial Wilt in Lampung. This study was conducted on May to October 2006. This study was aimed to screen and collect potential bacterial antagonists toward Ralstonia sp., the causal agent of banana bacterial wilt; to identify the collected potential antagonists, and to test the capability of the bacterial antagonist in vitro. A survey to collect soil samples was conducted in 5 districts in Lampung, namely Bandar Lampung, Lampung Selatan, Tanggamus, Lampung Utara, Lampung Tengah, and Lampung Timur. Identification and test of the antagonistic capability was done in the Plant Disease Laboratory, University of Lampung. Identification of the antagonist bacteria was done through several biochemical tests i.e. : gram reaction, hypersensitive reaction on tobacco, oxidative-fermentative, colony color on YDC medium, fluoresence, nitrate reduction, gelatin reduction and starch hydrolise.  The results were then compared to the guidelines of bacterial identification. Twenty one soil samples were collected from those surveyed areas to isolate antagonist bacteria, and 104 isolates were found to be antagonistic to Ralstonia sp.. Based on the biochemical tests, it was showed that 59 isolates were in the group of fluorecent pseudomonad and 45 ones were still unidentified. Out of 104 isolates found, 41 isolates have the ability to inhibit the growth of Ralstonia sp.

scholarly journals Isolation and identification of bacteria and parasites in glass eel (Anguilla spp.)

2021 ◽  
Vol 322 ◽  
pp. 02012
Author(s):  
Septyan Andriyanto ◽  
Hessy Novita ◽  
Tuti Sumiati ◽  
Taukhid
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Prevalence Rate ◽  
Bacterial Species ◽  
Bacterial Identification ◽  
Biochemical Method ◽  
Isolation And Identification ◽  
Glass Eel ◽  
Pathogenic Agent ◽  
Identification Of Bacteria ◽  
Glass Eels

The disease is the main agent that causes mortality of fish, especially during seed stages. The research aimed to find out bacteria and parasitic speciesin glass eel, Anguilla spp. Bacterial identification was carried out by a biochemical method. The prevalence of bacterial species was calculated using the El-Gohary et al. (2020) formula, while the results of bacterial identification from glass eel were Aeromonas spp., Vibrio spp., Enterococcus spp., Staphylococcus spp., Planococcus spp., Lactobacillus spp., Listeria spp., Citrbacterfreundii, Neisseria spp., Pseudomonas aeruginosa, Kurthia spp., Streptococcus spp., and Corynebacterium spp. It was found that the five highest prevalence rate was for Listeria spp. (39.64%), followed by Aeromonas spp. (26.13%), Staphylococcus spp. (16.22%), Corynebacterium spp. (5.41%), Lactobacillus spp. (2.70%), and the lowest prevalence rate was Streptococcus spp. (0.90%). The type of parasitic pathogen obtained was Trichodina spp. (2,70%), Dactylogyrus spp. (2,70%) and Gyrodactylus spp. (2,70%). Bacterial and parasites identified in glass eels need further verification on the epizootiology characteristic of each pathogenic agent.

scholarly journals Isolation, identification and antibiogram profile of Aeromonas hydrophila from broiler chickens in Mymensingh Sadar, Bangladesh

2020 ◽  
Vol 4 (1) ◽  
pp. 22-30
Author(s):  
Basana Sarker ◽  
Mohammad Arif ◽  
Nilofa Eashmen ◽  
Mir Rowshan Akter ◽  
SM Lutful Kabir
Keyword(s):  
Aeromonas Hydrophila ◽  
Broiler Chickens ◽  
Susceptibility Testing ◽  
Specific Detection ◽  
Biochemical Tests ◽  
Isolation And Identification ◽  
Alkaline Peptone Water ◽  
Sensitivity Pattern ◽  
Peptone Water

Investigation of Aeromonas hydrophila was conducted to assess the microbial quality of broiler chickens from July to November 2019. A total of 60 samples from 20 broiler chickens were collected from two different locations of Mymensingh Sadar: KR market, Bangladesh Agricultural University (BAU) and Shesh mor bazar (10 birds from each location). Samples included 20 skins, 20 legs and 20 breast samples from 20 broiler chickens. PCR was done for the specific detection of each isolate and finally antimicrobial susceptibility testing was performed to check sensitivity pattern of each isolate. Alkaline peptone water was used for processing and enrichment of the samples followed by inoculation onto Aeromonas selective agar supplemented with ampicillin for the isolation and identification of A. hydrophila. Out of these 60 samples, 27 isolates were confirmed as A. hydrophila through biochemical tests and PCR where 55.56% isolates were recovered from Shesh mor market and other 44.4% isolates from KR market, BAU. Source-wise analysis revealed that maximum isolates of A. hydrophila were recovered from skin (59.26 %) followed by leg (22.22 %) and breast samples (18.52 %). PCR test revealed that all 27 isolates were found carrying lip gene which is specific for A. hydrophila. Isolates of A. hydrophila were found sensitive to ciprofloxacin (92%), gentamycin (66%) and chloramphenicol (50%); intermediate against erythromycin (50%), tetracycline (50%) and imipenem (50%); resistant against co-trimoxazole (84%) and ampicillin (100%). From the present study, it was found that samples were considerably contaminated with Aeromonas hydrophila causing risks for public health. Necessary control actions should be taken in every steps of production, processing and marketing for mitigation of this contamination. Asian Australas. J. Food Saf. Secur. 2020, 4 (1), 22-30

scholarly journals ISOLASI DAN IDENTIFIKASI PATOGEN GETAH KUNING MANGGIS MELALUI PENDEKATAN POSTULAT KOCH DAN ANALISIS SECARA MOLEKULER

2014 ◽  
Vol 14 (2) ◽  
pp. 142-151
Author(s):  
I Ketut Suada ◽  
Ni Wayan Suniti
Keyword(s):  
Fusarium Oxysporum ◽  
Molecular Analysis ◽  
Fruit Quality ◽  
Irrigation Treatment ◽  
Causal Agent ◽  
Isolation And Identification ◽  
Fungus Species ◽  
Cell Turgor ◽  
Bitter Fruit

Isolation and identification of mangosteen yellow latex pathogen through Koch’s Postulate application and molecular analysis. The yellow latex disease decreases fruit quality of mangosteen because exogenic latex causes dirty fruit and the endogenic latex makes the bitter fruit taste and does not deserve to be consumed. The causal agent of the disease caused phusilogical disorder so that cells break due to unstability of cell turgor, the drift irrigation treatment was able to decrease the disease of 35.22%, therefore the causal agent could be microbe that promote the yellow latex. This research was aimed to find the yellow latex pathogens with its characteristics. The Koch Postulate was apllied to isolate and proved the microbes associated to the yellow latex and molecular analysis was constructed subsequently to find the microbe species.  The result of the research proved that there were three fungus species as the biotic agent responsible to the disease. The fungus were Verticillium albo-atrum with the highest pathogenecity ( 74.87%), followed by Fusarium oxysporum ( 70.15%), and Pestalotia macrotricha (20.32%).

VIBRIO PARAHAEMOLYTICUS–A REVIEW1

1971 ◽  
Vol 34 (9) ◽  
pp. 447-452 ◽  
Author(s):  
R. Nickelson ◽  
C. Vanderzant
Keyword(s):  
United States ◽  
Vibrio Parahaemolyticus ◽  
Fluorescent Antibody ◽  
Diagnostic Procedures ◽  
The United States ◽  
Fluorescent Antibody Technique ◽  
Biochemical Tests ◽  
Isolation And Identification ◽  
Antibody Technique ◽  
The Past

This review presents current information on the taxonomic position, biochemical characteristics, distribution, isolation and identification procedures, pathogenicity, and serology of Vibrio parahaemolyticus. In the past, V. parahaemolyticus was associated primarily with outbreaks of gastroenteritis in Japan caused by consumption of seafoods and other salted foods. In recent years, this organism has been isolated from marine environments and seafoods in many countries, including the United States. In addition to gastroenteritis, some strains may cause localized tissue infections in humans and cause death of crab and shrimp. In the United States, V. parahaemolyticus has been incriminated in unconfirmed outbreaks of foodborne illness associated with consumption of shellfish. Isolation procedures based on direct plating of food homogenates on selective media with or without prior enrichment in broth media are available. Suspect colonies are confirmed by biochemical tests and fluorescent antibody technique. Although antisera (7 polyvalent and 47 monovalent) for serological grouping of strains of V. parahaemolyticus are available, their usefulness in diagnostic procedures is at the present uncertain.

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