scholarly journals TOR and RAS pathways regulate desiccation tolerance inSaccharomyces cerevisiae

2013 ◽  
Vol 24 (2) ◽  
pp. 115-128 ◽  
Author(s):  
Aaron Z. Welch ◽  
Patrick A. Gibney ◽  
David Botstein ◽  
Douglas E. Koshland
Keyword(s):  
Growth Rate ◽  
Stress Response ◽  
Heat Shock ◽  
Desiccation Tolerance ◽  
Ribosome Biogenesis ◽  
Inverse Correlation ◽  
Fold Increase ◽  
Nutrient Deprivation ◽  
Camp Pathway ◽  
Dividing Cells

Tolerance to desiccation in cultures of Saccharomyces cerevisiae is inducible; only one in a million cells from an exponential culture survive desiccation compared with one in five cells in stationary phase. Here we exploit the desiccation sensitivity of exponentially dividing cells to understand the stresses imposed by desiccation and their stress response pathways. We found that induction of desiccation tolerance is cell autonomous and that there is an inverse correlation between desiccation tolerance and growth rate in glucose-, ammonia-, or phosphate-limited continuous cultures. A transient heat shock induces a 5000–fold increase in desiccation tolerance, whereas hyper-ionic, -reductive, -oxidative, or -osmotic stress induced much less. Furthermore, we provide evidence that the Sch9p-regulated branch of the TOR and Ras-cAMP pathway inhibits desiccation tolerance by inhibiting the stress response transcription factors Gis1p, Msn2p, and Msn4p and by activating Sfp1p, a ribosome biogenesis transcription factor. Among 41 mutants defective in ribosome biogenesis, a subset defective in 60S showed a dramatic increase in desiccation tolerance independent of growth rate. We suggest that reduction of a specific intermediate in 60S biogenesis, resulting from conditions such as heat shock and nutrient deprivation, increases desiccation tolerance.

scholarly journals Impaired Temperature Stress Response of a Streptococcus thermophilus deoD Mutant

2003 ◽  
Vol 69 (2) ◽  
pp. 1287-1289 ◽  
Author(s):  
Mario Varcamonti ◽  
Maria R. Graziano ◽  
Romilde Pezzopane ◽  
Gino Naclerio ◽  
Slavica Arsenijevic ◽  
...  
Keyword(s):  
Growth Rate ◽  
Stress Response ◽  
Heat Shock ◽  
Temperature Stress ◽  
Streptococcus Thermophilus ◽  
Wild Type ◽  
Temperature Shock ◽  
Dual Response ◽  
Survival Capacity

ABSTRACT An insertional deoD mutant of Streptococcus thermophilus strain SFi39 had a reduced growth rate at 20°C and an enhanced survival capacity to heat shock compared to the wild type, indicating that the deoD product is involved in temperature shock adaptation. We report evidence that ppGpp is implicated in this dual response.

scholarly journals Antisense Downregulation of ς32 as a Transient Metabolic Controller in Escherichia coli: Effects on Yield of Active Organophosphorus Hydrolase

2000 ◽  
Vol 66 (10) ◽  
pp. 4366-4371 ◽  
Author(s):  
Ranjan Srivastava ◽  
Hyung Joon Cha ◽  
Marvin S. Peterson ◽  
William E. Bentley
Keyword(s):  
Escherichia Coli ◽  
Molecular Weight ◽  
Stress Response ◽  
Heat Shock ◽  
Total Yield ◽  
Fold Increase ◽  
Organophosphorus Hydrolase ◽  
Ethanol Stress ◽  
Antisense Mrna ◽  
Partial Degradation

ABSTRACT Plasmids containing an antisense fragment of the ς32gene were constructed and introduced into Escherichia colicells. Downregulation of the ς32-mediated stress response was evaluated under heat shock and ethanol stress and during the production of organophosphorus hydrolase (OPH). Northern blot analyses revealed that ς32 sense mRNA was virtually undetected in antisense-producing cultures from 5 to 20 min after antisense induction. However, lower-molecular-weight bands were found, presumably due to partial degradation of ς32 mRNA. While a >10-fold increase in ς32 protein level was found under ethanol stress in the control cultures, antisense producing cultures resulted in a <3-fold increase, indicating downregulation of ς32. Correspondingly, antisense synthesis resulted in a decreased level of a ς32 regulated chaperone (GroEL) for the first 2 h after induction relative to control cultures without ς32 antisense mRNA. The total yield of OPH in the presence of ς32 antisense was, on average, 62% of the yield without antisense. However, during ς32 antisense production, a sixfold-higher specific OPH activity was observed compared to non-antisense-producing cultures.

scholarly journals Rox3 and Rts1 Function in the Global Stress Response Pathway in Baker's Yeast

Genetics ◽  
1996 ◽  
Vol 142 (4) ◽  
pp. 1083-1093 ◽  
Author(s):  
Carlos C Evangelista ◽  
Ana M Rodriguez Torres ◽  
M Paullin Limbach ◽  
Richard S Zitomer
Keyword(s):  
Stress Response ◽  
Heat Shock ◽  
Osmotic Stress ◽  
Regulatory Element ◽  
Regulatory Region ◽  
Mitogen Activated Protein Kinase ◽  
Regulatory Subunit ◽  
Temperature Sensitive ◽  
Global Stress ◽  
Rna Accumulation

Abstract Yeast respond to a variety of stresses through a global stress response that is mediated by a number of signal transduction pathways and the cis-acting STRE DNA sequence. The CYC7 gene, encoding iso-2-cytochrome c, has been demonstrated to respond to heat shock, glucose starvation, approach-to-stationary phase, and, as we demonstrate here, to osmotic stress. This response was delayed in a the hogl-Δ1 strain implicating the Hog1 mitogen-activated protein kinase cascade, a known component of the global stress response. Deletion analysis of the CYC7 regulatory region suggested that three STRE elements were each capable of inducing the stress response. Mutations in the ROX3 gene prevented CYC7 RNA accumulation during heat shock and osmotic stress. ROX3 RNA levels were shown to be induced by stress through a novel regulatory element. A selection for high-copy suppressors of a ROX3 temperature-sensitive allele resulted in the isolation of RTS1, encoding a protein with homology to the B′ regulatory subunit of protein phosphatase 2A0. Deletion of RTS1 caused temperature and osmotic sensitivity and increased accumulation of CYC7 RNA under all conditions. Over-expression of this gene caused increased CYC7 RNA accumulation in rox3 mutants but not in wild-type cells.

scholarly journals Genome-wide identification and analysis of the heat shock transcription factor family in moso bamboo (Phyllostachys edulis)

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Bin Huang ◽  
Zhinuo Huang ◽  
Ruifang Ma ◽  
Jialu Chen ◽  
Zhijun Zhang ◽  
...  
Keyword(s):  
Heat Stress ◽  
Stress Response ◽  
Heat Shock ◽  
Gene Family ◽  
Regulatory Elements ◽  
Moso Bamboo ◽  
Naphthalene Acetic Acid ◽  
Plant Responses ◽  
Heat Stress Response ◽  
Regulatory Pathways

AbstractHeat shock transcription factors (HSFs) are central elements in the regulatory network that controls plant heat stress response. They are involved in multiple transcriptional regulatory pathways and play important roles in heat stress signaling and responses to a variety of other stresses. We identified 41 members of the HSF gene family in moso bamboo, which were distributed non-uniformly across its 19 chromosomes. Phylogenetic analysis showed that the moso bamboo HSF genes could be divided into three major subfamilies; HSFs from the same subfamily shared relatively conserved gene structures and sequences and encoded similar amino acids. All HSF genes contained HSF signature domains. Subcellular localization prediction indicated that about 80% of the HSF proteins were located in the nucleus, consistent with the results of GO enrichment analysis. A large number of stress response–associated cis-regulatory elements were identified in the HSF upstream promoter sequences. Synteny analysis indicated that the HSFs in the moso bamboo genome had greater collinearity with those of rice and maize than with those of Arabidopsis and pepper. Numerous segmental duplicates were found in the moso bamboo HSF gene family. Transcriptome data indicated that the expression of a number of PeHsfs differed in response to exogenous gibberellin (GA) and naphthalene acetic acid (NAA). A number of HSF genes were highly expressed in the panicles and in young shoots, suggesting that they may have functions in reproductive growth and the early development of rapidly-growing shoots. This study provides fundamental information on members of the bamboo HSF gene family and lays a foundation for further study of their biological functions in the regulation of plant responses to adversity.

The inverse correlation between growth rate and cell carbohydrate content of Microcystis aeruginosa

2009 ◽  
Vol 22 (1) ◽  
pp. 105-107 ◽  
Author(s):  
Chong Wang ◽  
Hai-nan Kong ◽  
Sheng-bing He ◽  
Xiang-yong Zheng ◽  
Chun-jie Li
Keyword(s):  
Growth Rate ◽  
Microcystis Aeruginosa ◽  
Inverse Correlation ◽  
Carbohydrate Content

scholarly journals LED Illumination Spectrum Manipulation for Increasing the Yield of Sweet Basil (Ocimum basilicum L.)

Plants ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 344
Author(s):  
Md Momtazur Rahman ◽  
Mikhail Vasiliev ◽  
Kamal Alameh
Keyword(s):  
Growth Rate ◽  
Fold Increase ◽  
Photosynthetic Photon Flux Density ◽  
Ocimum Basilicum ◽  
Photon Flux ◽  
Photon Flux Density ◽  
White Led ◽  
Experimental Conditions ◽  
Sweet Basil ◽  
Optimal Illumination

Manipulation of the LED illumination spectrum can enhance plant growth rate and development in grow tents. We report on the identification of the illumination spectrum required to significantly enhance the growth rate of sweet basil (Ocimum basilicum L.) plants in grow tent environments by controlling the LED wavebands illuminating the plants. Since the optimal illumination spectrum depends on the plant type, this work focuses on identifying the illumination spectrum that achieves significant basil biomass improvement compared to improvements reported in prior studies. To be able to optimize the illumination spectrum, several steps must be achieved, namely, understanding plant biology, conducting several trial-and-error experiments, iteratively refining experimental conditions, and undertaking accurate statistical analyses. In this study, basil plants are grown in three grow tents with three LED illumination treatments, namely, only white LED illumination (denoted W*), the combination of red (R) and blue (B) LED illumination (denoted BR*) (relative red (R) and blue (B) intensities are 84% and 16%, respectively) and a combination of red (R), blue (B) and far-red (F) LED illumination (denoted BRF*) (relative red (R), blue (B) and far-red (F) intensities are 79%, 11%, and 10%, respectively). The photosynthetic photon flux density (PPFD) was set at 155 µmol m−2 s−1 for all illumination treatments, and the photoperiod was 20 h per day. Experimental results show that a combination of blue (B), red (R), and far-red (F) LED illumination leads to a one-fold increase in the yield of a sweet basil plant in comparison with only white LED illumination (W*). On the other hand, the use of blue (B) and red (R) LED illumination results in a half-fold increase in plant yield. Understanding the effects of LED illumination spectrum on the growth of plant sweet basil plants through basic horticulture research enables farmers to significantly improve their production yield, thus food security and profitability.

Microborings and growth in Late Ordovician halysitids and other corals

1993 ◽  
Vol 67 (6) ◽  
pp. 922-934 ◽  
Author(s):  
Robert J. Elias ◽  
Dong-Jin Lee
Keyword(s):  
Growth Rate ◽  
Linear Growth ◽  
Inverse Correlation ◽  
Weight Percent ◽  
Late Ordovician ◽  
Coral Growth ◽  
Linear Growth Rate ◽  
Skeletal Density ◽  
Rugose Coral ◽  
Endolithic Algae

Microborings in the Late Ordovician tabulate corals Catenipora rubra (a halysitid) and Manipora amicarum (a cateniform nonhalysitid) and in an epizoic solitary rugose coral differ from nearly all of those previously reported in Paleozoic corals. These microborings were formed within the coralla by endolithic algae and fungi located beneath living polyps. Comparable structures in the Late Ordovician tabulate Quepora ?agglomeratiformis (a halysitid) represent algal microborings, not spicules, and halysitids are corals, not sponges as suggested by Kaźmierczak (1989).Endolithic algae in cateniform tabulates relied primarily on light entering through the outer walls of the ranks rather than through the polyps; lacunae within coralla permitted appropriate levels of light to reach many corallites. The direction of boring was determined by corallum microstructure and possibly also by the distribution of organic matter within the skeleton. There is an apparent inverse correlation between boring activity and coral growth rate.The location and relative abundance of pyritized microborings within calcareous coralla can be established quantitatively and objectively from electron microprobe determinations of weight percent sulfur along appropriate traverses of the coral skeleton. The distribution of such microborings in Catenipora rubra and Manipora amicarum is comparable to algal banding in modern corals; this is the first report of such banding in the interiors of Paleozoic corals. Change in the intensity of boring within each corallum was evidently a response to variation in the linear growth rate of the coral, or to fluctuation in an environmental factor (perhaps light intensity) that could control both algal activity and growth rate in these corals. Change in the algal boring intensity and linear growth rate of the coral was generally but not always seasonal and usually but not invariably associated with change in the density of coral skeletal deposition.Cyclic bands of boring abundance maxima within fossil colonial corals provide a measure of annual linear growth comparable to the widely accepted method based on skeletal density bands. Algal bands are more sporadically developed than density bands within and among coralla, thus increasing the difficulty of interpretation. Fluctuations in the abundance of algal microborings apparently provide a detailed record of changes in the linear growth rate of colonies and of individuals within colonies. Combined analyses of microboring abundance and skeletal density will contribute significantly to our understanding of the biological and environmental factors involved in endolithic activity and coral growth.

Prospects for Cooperation Between Russia and Syria in Various Scenarios of Military Conflict Development

2021 ◽  
pp. 50-55
Author(s):  
Alheder Haled
Keyword(s):  
Growth Rate ◽  
Inverse Correlation ◽  
Foreign Economic Policy ◽  
Military Conflict ◽  
Political Situation ◽  
Gdp Growth Rate ◽  
Initial Stage ◽  
Military Conflicts ◽  
The Military ◽  
The Relationship

The paper is devoted to determining the prospects for cooperation between Russia and the Syrian Arab Republic in various scenarios of military conflicts. In order to identify the relationship between the success of the country's foreign economic policy and the military conflicts waged on its territory, a study was conducted of such indicators of Syria as: the growth rate of the peace index and the GDP growth rate. A strong inverse correlation is revealed, which means that the level of political situation and peace in the state determines the efficiency of the economy. In view of this, various scenarios of the development of the military conflict in Syria have been studied: at the initial stage, at the stage of active hostilities, at the present stage of overcoming the crisis. The last stage involves four different scenarios for the development of a military conflict, including a local nature and a protracted nature with the involvement of other countries of the world. Options for developing cooperation between Russia and Syria have been identified for each scenario. Taking into account the assessment of the international political situation, the two most likely scenarios for further military events in Syria are identified, and the prospects for cooperation between Russia and Syria in these conditions are outlined.

Identification of cis and trans components of a novel heat shock stress regulatory pathway in Saccharomyces cerevisiae

1993 ◽  
Vol 13 (1) ◽  
pp. 248-256
Author(s):  
N Kobayashi ◽  
K McEntee
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Stress Response ◽  
Heat Shock ◽  
Reporter Gene ◽  
Heat Shock Element ◽  
Cis Acting ◽  
Heat Shock Stress ◽  
Specific Complex ◽  
Cis And Trans ◽  
Shock Stress

The stress-responsive DDR2 gene (previously called DDRA2) of Saccharomyces cerevisiae is transcribed at elevated levels following stress caused by heat shock or DNA damage. Previously, we identified a 51-bp promoter fragment, oligo31/32, which conferred heat shock inducibility on the heterologous CYC1-lacZ reporter gene in S. cerevisiae (N. Kobayashi and K. McEntee, Proc. Natl. Acad. Sci. USA 87:6550-6554, 1990). Using a series of synthetic oligonucleotides, we have identified a pentanucleotide, CCCCT (C4T), as an essential component of this stress response sequence. This element is not a binding site for the well-characterized heat shock transcription factor which recognizes a distinct cis-acting heat shock element in the promoters of many heat shock genes. Here we demonstrate the ability of oligonucleotides containing the C4T sequence to confer heat shock inducibility on the reporter gene and show that the presence of two such elements produces more than additive effects on induction. Gel retardation experiments have been used to demonstrate specific complex formation between C4T-containing fragments and one or more yeast proteins. Formation of these complexes was not competed by fragments containing mutations in the C4T sequence nor by heat shock element-containing competitor DNAs. Fragments containing the C4T element bound to a single 140-kDa polypeptide, distinct from heat shock transcription factors in yeast crude extracts. These experiments identify key cis- and trans-acting components of a novel heat shock stress response pathway in S. cerevisiae.

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