scholarly journals A framework to bridge scales in distribution modeling of soil microbiota

2020 ◽  
Vol 96 (5) ◽  
Author(s):  
Jonas J Lembrechts ◽  
L Broeders ◽  
J De Gruyter ◽  
D Radujković ◽  
I Ramirez-Rojas ◽  
...  
Keyword(s):  
Environmental Gradients ◽  
Spatial Scales ◽  
Biotic Interactions ◽  
Environmental Niche ◽  
Distribution Models ◽  
Soil Microbiota ◽  
Soil Microbial ◽  
Critical Issues ◽  
Multiple Species ◽  
Species Specific

ABSTRACT Creating accurate habitat suitability and distribution models (HSDMs) for soil microbiota is far more challenging than for aboveground organism groups. In this perspective paper, we propose a conceptual framework that addresses several of the critical issues holding back further applications. Most importantly, we tackle the mismatch between the broadscale, long-term averages of environmental variables traditionally used, and the environment as experienced by soil microbiota themselves. We suggest using nested sampling designs across environmental gradients and objectively integrating spatially hierarchic heterogeneity as covariates in HSDMs. Second, to incorporate the crucial role of taxa co-occurrence as driver of soil microbial distributions, we promote the use of joint species distribution models, a class of models that jointly analyze multiple species’ distributions, quantifying both species-specific environmental responses (i.e. the environmental niche) and covariance among species (i.e. biotic interactions). Our approach allows incorporating the environmental niche and its associated distribution across multiple spatial scales. The proposed framework facilitates the inclusion of the true relationships between soil organisms and their abiotic and biotic environments in distribution models, which is crucial to improve predictions of soil microbial redistributions as a result of global change.

scholarly journals Evidence for large-scale effects of competition: niche displacement in Canada lynx and bobcat

2013 ◽  
Vol 280 (1773) ◽  
pp. 20132495 ◽  
Author(s):  
Michael J. L. Peers ◽  
Daniel H. Thornton ◽  
Dennis L. Murray
Keyword(s):  
Large Scale ◽  
Scale Effects ◽  
Spatial Scales ◽  
Biotic Interactions ◽  
Character Displacement ◽  
Lynx Rufus ◽  
Ecological Communities ◽  
Lynx Canadensis ◽  
Distribution Models ◽  
Canada Lynx

Determining the patterns, causes and consequences of character displacement is central to our understanding of competition in ecological communities. However, the majority of competition research has occurred over small spatial extents or focused on fine-scale differences in morphology or behaviour. The effects of competition on broad-scale distribution and niche characteristics of species remain poorly understood but critically important. Using range-wide species distribution models, we evaluated whether Canada lynx ( Lynx canadensis ) or bobcat ( Lynx rufus ) were displaced in regions of sympatry. Consistent with our prediction, we found that lynx niches were less similar to those of bobcat in areas of sympatry versus allopatry, with a stronger reliance on snow cover driving lynx niche divergence in the sympatric zone. By contrast, bobcat increased niche breadth in zones of sympatry, and bobcat niches were equally similar to those of lynx in zones of sympatry and allopatry. These findings suggest that competitively disadvantaged species avoid competition at large scales by restricting their niche to highly suitable conditions, while superior competitors expand the diversity of environments used. Our results indicate that competition can manifest within climatic niche space across species’ ranges, highlighting the importance of biotic interactions occurring at large spatial scales on niche dynamics.

scholarly journals Multiple species‐specific molecular markers using nanofluidic array as a tool to detect prey DNA from carnivore scats

2021 ◽  
Author(s):  
Cecilia Di Bernardi ◽  
Camilla Wikenros ◽  
Eva Hedmark ◽  
Luigi Boitani ◽  
Paolo Ciucci ◽  
...  
Keyword(s):  
Molecular Markers ◽  
Multiple Species ◽  
Species Specific

scholarly journals Longitudinal zonation of larval Hydropsyche (Trichoptera: Hydropsychidae): abiotic environmental factors and biotic interactions behind the downstream sequence of Central European species

Hydrobiologia ◽  
2021 ◽  
Author(s):  
Márk Ficsór ◽  
Zoltán Csabai
Keyword(s):  
Environmental Factors ◽  
Biotic Interactions ◽  
Life Cycles ◽  
Longitudinal Distribution ◽  
Central European ◽  
European Species ◽  
Longitudinal Gradients ◽  
Species Specific ◽  
Behavioural Aspects ◽  
Abiotic Environmental Factors

AbstractThe aim of this review is to summarize the literature knowledge about how abiotic environmental factors and biotic interactions affect the sequentially overlapping longitudinal distribution of Central European species of the net-spinning freshwater caddisfly larvae of the genus Hydropsyche (Trichoptera: Hydropsychidae). In this relation, several physical and chemical parameters of water are discussed, as well as different species-specific traits, behavioural aspects and the interaction of coexisting species. Longitudinal gradients of river networks, especially annual temperature range, flow velocity and the particle size of suspended food material play a crucial role in forming the downstream succession of characteristic species, while increased levels of organic pollution, nutrients, salinity and heavy metals facilitates the presence of more tolerant ones. Several species-specific traits, such as respiration range, net-building frequency, head capsule size or optimal net-building velocity correlate with the position of a given species in the sequence. Coexistence of species with similar ecological demands in the overlapping zones of distribution is facilitated by differences in feeding and net-building habits, microhabitat preferences and staggering life cycles, but complicated at the same time by means of inter- and intraspecific territorial behaviour, such as fighting for the ownership of larval retreats or the practice of stridulation.

scholarly journals Interacting effects of insect and ungulate herbivory on Scots pine growth

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Michelle Nordkvist ◽  
Maartje J. Klapwijk ◽  
La rs Edenius ◽  
Christer Björkman
Keyword(s):  
Plant Growth ◽  
Scots Pine ◽  
Growth Response ◽  
Insect Herbivory ◽  
Additive Effects ◽  
Significant Interaction Effect ◽  
Ungulate Herbivory ◽  
Pine Trees ◽  
Multiple Species ◽  
Species Specific

AbstractMost plants are subjected to damage from multiple species of herbivores, and the combined impact on plant growth can be non-additive. Since plant response to herbivores tends to be species specific, and change with repeated damage, the outcome likely depend on the sequence and number of attacks. There is a high likelihood of non-additive effects on plant growth by damage from mammals and insects, as mammalian herbivory can alter insect herbivore damage levels, yet few studies have explored this. We report the growth response of young Scots pine trees to sequential mammal and insect herbivory, varying the sequence and number of damage events, using an ungulate-pine-sawfly system. Combined sawfly and ungulate herbivory had both additive and non-additive effects on pine growth—the growth response depended on the combination of ungulate browsing and sawfly defoliation (significant interaction effect). Repeated sawfly herbivory reduced growth (compared to single defoliation) on un-browsed trees. However, on browsed trees, depending on when sawfly defoliation was combined with browsing, trees exposed to repeated sawfly herbivory had both higher, lower and the same growth as trees exposed to a single defoliation event. We conclude that the sequence of attacks by multiple herbivores determine plant growth response.

scholarly journals Bark traits, decomposition and flammability of Australian forest trees

2017 ◽  
Vol 65 (4) ◽  
pp. 327 ◽  
Author(s):  
Saskia Grootemaat ◽  
Ian J. Wright ◽  
Peter M. van Bodegom ◽  
Johannes H. C. Cornelissen ◽  
Veronica Shaw
Keyword(s):  
Forest Tree ◽  
Remarkable Feature ◽  
Interspecific Differences ◽  
Eucalypt Plantations ◽  
Physical Traits ◽  
Key Driver ◽  
Multiple Species ◽  
Species Specific ◽  
First Time ◽  
Different Tissues

Bark shedding is a remarkable feature of Australian trees, yet relatively little is known about interspecific differences in bark decomposability and flammability, or what chemical or physical traits drive variation in these properties. We measured the decomposition rate and flammability (ignitibility, sustainability and combustibility) of bark from 10 common forest tree species, and quantified correlations with potentially important traits. We compared our findings to those for leaf litter, asking whether the same traits drive flammability and decomposition in different tissues, and whether process rates are correlated across tissue types. Considerable variation in bark decomposability and flammability was found both within and across species. Bark decomposed more slowly than leaves, but in both tissues lignin concentration was a key driver. Bark took longer to ignite than leaves, and had longer mass-specific flame durations. Variation in flammability parameters was driven by different traits in the different tissues. Decomposability and flammability were each unrelated, when comparing between the different tissue types. For example, species with fast-decomposing leaves did not necessarily have fast-decomposing bark. For the first time, we show how patterns of variation in decomposability and flammability of bark diverge across multiple species. By taking species-specific bark traits into consideration there is potential to make better estimates of wildfire risks and carbon loss dynamics. This can lead to better informed management decisions for Australian forests, and eucalypt plantations, worldwide.

scholarly journals Evaluation metrics and validation of presence-only species distribution models based on distributional maps with varying coverage

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Kamil Konowalik ◽  
Agata Nosol
Keyword(s):  
Ecological Niche Modeling ◽  
Niche Modeling ◽  
Ecological Niches ◽  
Herbarium Specimens ◽  
Wide Field ◽  
Environmental Niche ◽  
Endemic Plant ◽  
Distribution Models ◽  
Environmental Niche Modeling ◽  
Almost All

AbstractWe examine how different datasets, including georeferenced hardcopy maps of different extents and georeferenced herbarium specimens (spanning the range from 100 to 85,000 km2) influence ecological niche modeling. We check 13 of the available environmental niche modeling algorithms, using 30 metrics to score their validity and evaluate which are useful for the selection of the best model. The validation is made using an independent dataset comprised of presences and absences collected in a range-wide field survey of Carpathian endemic plant Leucanthemum rotundifolium (Compositae). Our analysis of models’ predictive performances indicates that almost all datasets may be used for the construction of a species distributional range. Both very local and very general datasets can produce useful predictions, which may be more detailed than the original ranges. Results also highlight the possibility of using the data from manually georeferenced archival sources in reconstructions aimed at establishing species’ ecological niches. We discuss possible applications of those data and associated problems. For the evaluation of models, we suggest employing AUC, MAE, and Bias. We show an example of how AUC and MAE may be combined to select the model with the best performance.

scholarly journals Flowering phenology in alpine grassland strongly responds to shifts in snowmelt but weakly to summer drought

Alpine Botany ◽  
2021 ◽  
Author(s):  
Maria Vorkauf ◽  
Ansgar Kahmen ◽  
Christian Körner ◽  
Erika Hiltbrunner
Keyword(s):  
Biotic Interactions ◽  
Flowering Phenology ◽  
Alpine Plants ◽  
Alpine Grassland ◽  
Summer Drought ◽  
Phenological Cycle ◽  
The Alps ◽  
Delayed Flowering ◽  
Photoperiod Sensitive ◽  
Species Specific

AbstractAlpine plants complete their seasonal phenological cycle during two to three snow-free months. Under climate change, snowmelt advances and the risk of summer droughts increases. Yet, photoperiodism may prevent alpine plants from benefiting from an earlier start of the growing season. To identify the drivers of flowering phenology in the seven main species of an alpine grassland, we experimentally shifted the snowmelt date through snow manipulations, and excluded precipitation during summer. With “time-to-event” models, we analysed the beginning of main flowering with respect to temperature sums, time after snowmelt, and calendar day (photoperiod). We identified two phenology types: four species tracking snowmelt dates directly or with a certain lag set by temperature sums, including the dominant sedge Carex curvula, Anthoxanthum alpinum Helictotrichon versicolor, and Trifolium alpinum, and three species tracking photoperiod: Geum montanum, Leontodon helveticus and Potentilla aurea. Photoperiodism did not act as daylength threshold but rather modulated the thermal sums at flowering. Hence, photoperiod delayed flowering after earlier snowmelt. The grass A. alpinum was the only one of seven species that clearly responded to drought by earlier and longer flowering. The remarkably high importance of snowmelt dates for both phenology types suggests an earlier onset of flowering in a warmer climate, particularly for non-photoperiod-sensitive species, with an increasing risk for freezing damages and potential disruptions of biotic interactions in the most frequent type of alpine grassland across the Alps. Consequentially, the distinct microclimate and species-specific responses to photoperiod challenge temperature-only based projections of climate warming effects on alpine plant species.

Temperature as a Proximate Factor in Orientation Behavior

1977 ◽  
Vol 34 (5) ◽  
pp. 734-739 ◽  
Author(s):  
William W. Reynolds
Keyword(s):  
Temperature Response ◽  
Biotic Interactions ◽  
Niche Differentiation ◽  
Behavioral Thermoregulation ◽  
Size Segregation ◽  
Ecological Value ◽  
Thermal Requirements ◽  
Prey Location ◽  
Proximate Factor ◽  
Species Specific

Temperature serves as a proximate factor (cue, guidepost, sign stimulus, or directive factor) affecting locomotor responses of fishes. Although temperature can also serve as an ultimate ecological factor, as in behavioral thermoregulation, nonthermal factors may in some cases provide the ultimate adaptive or ecological value of a temperature response; some examples are habitat selection, intraspecific size segregation, interspecific niche differentiation, isolating mechanisms, predator avoidance, prey location, escape reactions, and migrations (thermoperiodic, diel, seasonal, spawning). Conversely, nonthermal variables such as light intensity or water depth may act as accessory proximate factors in thermoregulation. In spawning migrations, thermal requirements of eggs and larvae may take precedence over the (often different) preferenda or optima of adults. Although thermal responses of fishes are largely innate and species specific, ontogenetic and other changes can occur. Since temperature can serve as an unconditioned reinforcer in operant conditioning, thermal responses are not limited to simple kineses or taxes. Nonthermal factors such as photoperiod, circadian rhythms, currents, social and biotic interactions, stresses, infections, or chemicals can affect thermal responses, and may account for some lack of conformity between laboratory preferenda and field distributions and behaviors. Key words: thermoregulation, orientation, preferendum, selection, preference, avoidance, behavior, temperature, fish, responses

scholarly journals Seasonal quantitative dynamics and ecology of pelagic rotifers in an acidified boreal lake

2017 ◽  
Vol 77 (1) ◽  
Author(s):  
Svein Birger Wærvågen ◽  
Tom Andersen
Keyword(s):  
Community Structure ◽  
Environmental Gradients ◽  
Seasonal Succession ◽  
Biotic Interactions ◽  
Resource Limitation ◽  
Local Environment ◽  
Food Competition ◽  
Variance Partitioning ◽  
Boreal Lake ◽  
Rotifer Community

Lake Gjerstadvann is a dimictic, oligotrophic, slightly acidified boreal lake in southern Norway (northwest Europe). The planktonic rotifer community of this lake was studied quantitatively during one year in order to investigate the impacts of the local environment and biotic interactions on seasonal succession and habitat selection. Pure suspension feeders (mainly Keratella spp., Conochilus spp., and Kellicottia longispina) together with raptorial graspers or specialised feeders (mainly Polyarthra spp. and Collotheca spp.) dominated the rotifer community over prolonged periods, whereas carnivorous/omnivorous species (mainly Asplanchna priodonta) were extremely uncommon. Low bicarbonate buffering capacity resulted in a distinctive seasonal oscillating pH between 5.0 and 5.6, defining a special acid-transition lake category. The pH values were highest in the productive period during summer, and lowest during ice break-up coinciding with the peak reactive aluminium concentrations of 250-300 mg L-1. As in typical Norwegian boreal perch lakes, the most abundant cladoceran was Bosmina longispina due to perch predation on the genus Daphnia. Rotifer community structure was significantly related to temperature and oxygen (P=0.001 and P=0.022), illustrating the important effects of the seasonal cycle and vertical density stratification. The most significant competition indicator species were B. longispina and Eudiaptomus gracilis (both with P=0.001). A variance partitioning indicated that 14% of the total community composition variance could only be explained by biotic interactions, while 19% of the variance could be attributed to environmental gradients. Of the variance, 23% could not be resolved between biotic interactions and environmental gradients, while a residual of 44% was not explainable by any of the variables. Acid conditions alone cannot account for all the observed changes in the rotifer community of this lake with low humic content, since resource limitation and food competition are also important factors shaping rotifer population dynamics and the community structure.

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