scholarly journals Varying water deficit stress (WDS) tolerance in grain amaranths involves multifactorial shifts in WDS-related responses

2017 ◽  
Author(s):  
América Tzitziki González-Rodríguez ◽  
Ismael Cisneros Hernández ◽  
Norma A. Martínez-Gallardo ◽  
Erika Mellado-Mojica ◽  
Mercedes López-Pérez ◽  
...  
Keyword(s):  
Water Deficit ◽  
Expression Patterns ◽  
Marker Gene ◽  
Water Deficit Stress ◽  
Sensitive Data ◽  
Gene Markers ◽  
Amaranthus Hypochondriacus ◽  
Galactinol Synthase ◽  
Tolerant Species ◽  
Raffinose Synthase

AbstractIn this study, water deficit stress (WDS)-tolerance in several cultivars of grain amaranth species (Amaranthus hypochondriacus[Ahypo],A. cruentus[Acru] and A.caudatus[Acau]), in addition toA. hybridus(Ahyb), an ancestral amaranth, was examined. Ahypo was the most WDS-tolerant species, whereas Acau and Ahyb were WDS-sensitive. Data revealed that the differential WDS tolerance observed was multifactorial. It involved increased proline and raffinose (Raf) in leaves and/ or roots. Higher foliar Raf coincided with inducedGalactinol synthase 1(AhGolS1) andRaffinose synthase(AhRafS) expression. Unknown compounds, possibly larger RFOs, also accumulated in leaves of WDS-tolerant amaranths, which had high Raf/ Verbascose ratios. Distinct nonstructural carbohydrate (NSC) accumulation patterns were observed in tolerant species under WDS and recovery, such as: i) high Hex/ Suc ratios in roots coupled to increased cell wall and vacuolar invertase and sucrose synthase activities; ii) a severer depletion of starch reserves; iii) lower NSC content in leaves, and iv) higher basal hexose levels in roots which further increased under WDS. WDS-marker gene expression patterns proposed a link between amaranth’s WDS tolerance and abscisic acid-dependent signaling. Results obtained also suggest thatAhTRE,AhTPS9,AhTPS11,AhGolS1 and AhRafSare reliable gene markers of WDS tolerance in amaranth.HighlightDifferential water deficit stress tolerance in grain amaranths and their ancestor,Amaranthus hybridus, is a multifactorial process involving various biochemical changes and modified expression patterns of key stress-related genes.

scholarly journals Identification of Factors Linked to Higher Water-Deficit Stress Tolerance in Amaranthus hypochondriacus Compared to Other Grain Amaranths and A. hybridus, Their Shared Ancestor

Plants ◽  
2019 ◽  
Vol 8 (7) ◽  
pp. 239 ◽  
Author(s):  
Tzitziki González-Rodríguez ◽  
Ismael Cisneros-Hernández ◽  
Jonathan Acosta Bayona ◽  
Enrique Ramírez-Chavez ◽  
Norma Martínez-Gallardo ◽  
...  
Keyword(s):  
Water Deficit ◽  
Water Deficit Stress ◽  
Marker Genes ◽  
Raffinose Family Oligosaccharides ◽  
Amaranthus Hypochondriacus ◽  
Galactinol Synthase ◽  
Raffinose Synthase ◽  
Unknown Structure ◽  
Use Efficiency ◽  
Strong Depletion

Water deficit stress (WDS)-tolerance in grain amaranths (Amaranthus hypochondriacus, A. cruentus and A. caudatus), and A. hybridus, their presumed shared ancestor, was examined. A. hypochondriacus was the most WDS-tolerant species, a trait that correlated with an enhanced osmotic adjustment (OA), a stronger expression of abscisic acid (ABA) marker genes and a more robust sugar starvation response (SSR). Superior OA was supported by higher basal hexose (Hex) levels and high Hex/sucrose (Suc) ratios in A. hypochondriacus roots, which were further increased during WDS. This coincided with increased invertase, amylase and sucrose synthase activities and a strong depletion of the starch reserves in leaves and roots. The OA was complemented by the higher accumulation of proline, raffinose, and other probable raffinose-family oligosaccharides of unknown structure in leaves and/or roots. The latter coincided with a stronger expression of Galactinol synthase 1 and Raffinose synthase in leaves. Increased SnRK1 activity and expression levels of the class II AhTPS9 and AhTPS11 trehalose phosphate synthase genes, recognized as part of the SSR network in Arabidopsis, were induced in roots of stressed A. hypochondriacus. It is concluded that these physiological modifications improved WDS in A. hypochondriacus by raising its water use efficiency.

scholarly journals Single-cell analysis of microglial transcriptomic diversity in subarachnoid hemorrhage

2021 ◽  
Author(s):  
Junfan CHEN ◽  
Lei SUN ◽  
Hao LYU ◽  
Zhiyuan ZHENG ◽  
Huasheng LAI ◽  
...  
Keyword(s):  
Subarachnoid Hemorrhage ◽  
Single Cell ◽  
Expression Patterns ◽  
Critical Role ◽  
Marker Gene ◽  
Transcriptional Analysis ◽  
Integrated Analysis ◽  
Cellular Interactions ◽  
Monitoring Methods ◽  
Gene Markers

Background: Subarachnoid hemorrhage (SAH) is a severe stroke and the advanced treatment for SAH is still limited. Recent studies have shown that microglia-mediated neuroinflammation plays a critical role in the pathogenesis of SAH. Microglia can transform their states in response to central nervous system injury. However, the transcriptomic features of microglia remained unknown in SAH. Recent developed single-cell RNA sequencing (scRNA-seq) provides a possible way to solve this problem. Methods: Endovascular perforation (EVP) murine SAH model was established to reproduce experimental SAH. Microglia states are examined with immune staining and quantitate analysis. Post-SAH microglial single-cell suspension were harvest and sequenced using 10X scRNA-seq platform. Then, the detailed single-cell transcriptomic characterization of post-SAH microglia were analyzed with bioinformatics. Results: Transcriptional analysis revealed at least ten diverse microglial subgroups, including SAH-associated microglia (SAM), inflammatory-associated microglia (IAM) and proliferation-associated microglia (PAM), which all exhibit distinct marker gene expression patterns. Microglia subsets interaction reveals the functional relationship between elevated signaling pathways and microglial sub-populations in SAH. Receptor-ligand pair analysis revealed that complex inter-cellular interactions exist between the microglia subsets and other cell types, and indicated that microglia are important mediators of neuroinflammation after SAH. Integrated analysis with normal microglia further proved the existence of these microglia subpopulations and different gene markers associated with SAH were clarified. Conclusions: Collectively, we first report the single-cell transcriptome of post-SAH microglia and found specific biomarkers related to the neuroinflammation in SAH. These results enhanced our understanding of the pathological mechanisms of microglial response to SAH, and may guide future development of SAH monitoring methods and therapeutics.

scholarly journals Genotypic performance of Australian durum under single and combined water-deficit and heat stress during reproduction

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Haipei Liu ◽  
Amanda J. Able ◽  
Jason A. Able
Keyword(s):  
Heat Stress ◽  
Water Deficit ◽  
Crop Production ◽  
Expression Patterns ◽  
Physiological Traits ◽  
Molecular Networks ◽  
Systematic Evaluation ◽  
Water Deficit Stress ◽  
Response Factors ◽  
Auxin Response Factors

Abstract In Mediterranean environments, water deficiency and heat during reproduction severely limit cereal crop production. Our research investigated the effects of single and combined pre-anthesis water-deficit stress and post-anthesis heat stress in ten Australian durum genotypes, providing a systematic evaluation of stress response at the molecular, physiological, grain quality and yield level. We studied leaf physiological traits at different reproductive stages, evaluated the grain yield and quality, and the associations among them. We profiled the expression dynamics of two durum microRNAs and their protein-coding targets (auxin response factors and heat shock proteins) involved in stress adaptation. Chlorophyll content, stomatal conductance and leaf relative water content were mostly reduced under stress, however, subject to the time-point and genotype. The influence of stress on grain traits (e.g., protein content) also varied considerably among the genotypes. Significant positive correlations between the physiological traits and the yield components could be used to develop screening strategies for stress improvement in breeding. Different expression patterns of stress-responsive microRNAs and their targets in the most stress-tolerant and most stress-sensitive genotype provided some insight into the complex defense molecular networks in durum. Overall, genotypic performance observed indicates that different stress-coping strategies are deployed by varieties under various stresses.

The overexpression of an Amaranthus hypochondriacus NF-YC gene modifies growth and confers water deficit stress resistance in Arabidopsis

Plant Science ◽  
2015 ◽  
Vol 240 ◽  
pp. 25-40 ◽  
Author(s):  
Paola A. Palmeros-Suárez ◽  
Julio A. Massange-Sánchez ◽  
Norma A. Martínez-Gallardo ◽  
Josaphat M. Montero-Vargas ◽  
Juan F. Gómez-Leyva ◽  
...  
Keyword(s):  
Water Deficit ◽  
Stress Resistance ◽  
Water Deficit Stress ◽  
Amaranthus Hypochondriacus

scholarly journals Time-course transcriptomic analysis of Petunia ×hybrida leaves under water deficit stress using RNA sequencing

PLoS ONE ◽  
2021 ◽  
Vol 16 (4) ◽  
pp. e0250284
Author(s):  
Suejin Park ◽  
Asela J. Wijeratne ◽  
Youyoun Moon ◽  
Nicole L. Waterland
Keyword(s):  
Water Stress ◽  
Stress Response ◽  
Rna Sequencing ◽  
Water Deficit ◽  
Time Course ◽  
Expression Patterns ◽  
Glutathione Metabolism ◽  
Water Deficit Stress ◽  
Multiple Time ◽  
Water Stress Tolerance

Water deficit limits plant growth and development, resulting in quality loss of horticultural crops. However, there is limited information on gene regulation and signaling pathways related to water deficit stress response at multiple time points. The objective of this research was to investigate global gene expression patterns under water deficit stress to provide an insight into how petunia (Petunia ×hybrida ‘Mitchell Diploid’) responded in the process of stress. Nine-week-old petunias were irrigated daily or placed under water stress by withholding water. Stressed plants reduced stomatal conductance after five days of water deficit, indicating they perceived stress and initiated stress response mechanisms. To analyze transcriptomic changes at the early stage of water deficit, leaf tissue samples were collected 1, 3, and 5 days after water was withheld for RNA sequencing. Under water deficit stress, 154, 3611, and 980 genes were upregulated and 41, 2806, and 253 genes were downregulated on day 1, 3, and 5, respectively. Gene Ontology analysis revealed that redox homeostasis processes through sulfur and glutathione metabolism pathways, and hormone signal transduction, especially abscisic acid and ethylene, were enriched under water deficit stress. Thirty-four transcription factor families were identified, including members of AP2/ERF, NAC, MYB-related, C2H2, and bZIP families, and TFs in AP2/ERF family was the most abundant in petunia. Interestingly, only one member of GRFs was upregulated on day 1, while most of TFs were differentially expressed on day 3 and/or 5. The transcriptome data from this research will provide valuable molecular resources for understanding the early stages of water stress-responsive networks as well as engineering petunia with enhanced water stress tolerance.

The study of important agronomic traits by multivariate analysis in winter rapeseed cultivars

2014 ◽  
Vol 1 (1) ◽  
pp. 20-24
Author(s):  
Gader Ghaffari ◽  
Farhad Baghbani ◽  
Behnam Tahmasebpour
Keyword(s):  
Water Potential ◽  
Water Deficit ◽  
Leaf Water Potential ◽  
Seed Weight ◽  
Dry Weight ◽  
Total Variance ◽  
Water Deficit Stress ◽  
The Third ◽  
High Eigenvalue ◽  
Winter Rapeseed

In order to group winter rapeseed cultivars according to evaluated traits, an experiment was conducted in the Research Greenhouse of Agriculture Faculty, University of Tabriz - IRAN. In the experiment were included 12 cultivars of winter rapeseed and 3 levels of water deficit stress. Gypsum blocks were used to monitor soil moisture. Water deficit stress was imposed from stem elongation to physiological maturity. According to the principal component analysis, five principal components were chosen with greater eigenvalue (more than 0.7) that are including 81.34% of the primeval variance of variables. The first component that explained the 48.02% of total variance had the high eigenvalue. The second component could justify about 13.64% of total variance and had positive association with leaf water potential and proline content and had negative relationship with leaf stomatal conductivity. The third, fourth and fifth components expressed around, 10.18, 4.83 and 4.68% of the total variance respectively. The third component had the high eigenvalue for plant dry weight. The fourth component put 1000-seed weight, seed yield, Silique per Plant and root dry weight against plant dry weight, chlorophyll fluorescence and leaf water potential. The fifth component had the high eigenvalue for root dry weight, root volume and 1000-seed weight.

scholarly journals EMS Derived Wheat Mutant BIG8-1 (Triticum aestivum L.)—A New Drought Tolerant Mutant Wheat Line

2021 ◽  
Vol 22 (10) ◽  
pp. 5314
Author(s):  
Marlon-Schylor L. le Roux ◽  
Nicolas Francois V. Burger ◽  
Maré Vlok ◽  
Karl J. Kunert ◽  
Christopher A. Cullis ◽  
...  
Keyword(s):  
Amino Acids ◽  
Water Deficit ◽  
Triticum Aestivum L ◽  
Water Deficit Stress ◽  
Drought Response ◽  
Fibrous Root ◽  
Wheat Varieties ◽  
Breeding Programs ◽  
Response Characteristics ◽  
Drought Tolerant

Drought response in wheat is considered a highly complex process, since it is a multigenic trait; nevertheless, breeding programs are continuously searching for new wheat varieties with characteristics for drought tolerance. In a previous study, we demonstrated the effectiveness of a mutant known as RYNO3936 that could survive 14 days without water. In this study, we reveal another mutant known as BIG8-1 that can endure severe water deficit stress (21 days without water) with superior drought response characteristics. Phenotypically, the mutant plants had broader leaves, including a densely packed fibrous root architecture that was not visible in the WT parent plants. During mild (day 7) drought stress, the mutant could maintain its relative water content, chlorophyll content, maximum quantum yield of PSII (Fv/Fm) and stomatal conductance, with no phenotypic symptoms such as wilting or senescence despite a decrease in soil moisture content. It was only during moderate (day 14) and severe (day 21) water deficit stress that a decline in those variables was evident. Furthermore, the mutant plants also displayed a unique preservation of metabolic activity, which was confirmed by assessing the accumulation of free amino acids and increase of antioxidative enzymes (peroxidases and glutathione S-transferase). Proteome reshuffling was also observed, allowing slow degradation of essential proteins such as RuBisCO during water deficit stress. The LC-MS/MS data revealed a high abundance of proteins involved in energy and photosynthesis under well-watered conditions, particularly Serpin-Z2A and Z2B, SGT1 and Calnexin-like protein. However, after 21 days of water stress, the mutants expressed ABC transporter permeases and xylanase inhibitor protein, which are involved in the transport of amino acids and protecting cells, respectively. This study characterizes a new mutant BIG8-1 with drought-tolerant characteristics suited for breeding programs.

scholarly journals Increase maize productivity and water use efficiency through application of potassium silicate under water stress

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
M. A. Gomaa ◽  
Essam E. Kandil ◽  
Atef A. M. Zen El-Dein ◽  
Mamdouh E. M. Abou-Donia ◽  
Hayssam M. Ali ◽  
...  
Keyword(s):  
Grain Yield ◽  
Water Use Efficiency ◽  
Water Deficit ◽  
Water Use ◽  
Field Experiments ◽  
Foliar Application ◽  
Potassium Silicate ◽  
Water Deficit Stress ◽  
Maize Productivity ◽  
Use Efficiency

AbstractIn Egypt, water shortage has become a key limiting factor for agriculture. Water-deficit stress causes different morphological, physiological, and biochemical impacts on plants. Two field experiments were carried out at Etay El-Baroud Station, El-Beheira Governorate, Agriculture Research Center (ARC), Egypt, to evaluate the effect of potassium silicate (K-silicate) of maize productivity and water use efficiency (WUE). A split-plot system in the four replications was used under three irrigation intervals during the 2017 and 2018 seasons. Whereas 10, 15, and 20 days irrigation intervals were allocated in main plots, while the three foliar application treatments of K-silicate (one spray at 40 days after sowing; two sprays at 40 and 60 days; and three sprays at 40, 60, and 80 days, and a control (water spray) were distributed in the subplots. All the treatments were distributed in 4 replicates. The results indicated that irrigation every 15 days gave the highest yield in both components and quality. The highly significant of (WUE) under irrigation every 20 days. Foliar spraying of K-silicate three times resulted in the highest yield. Even under water-deficit stress, irrigation every fifteen days combined with foliar application of K-silicate three times achieved the highest values of grain yield and its components. These results show that K-silicate treatment can increase WUE and produce high grain yield requiring less irrigation.

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