scholarly journals Population structure and clonal prevalence of scleractinian corals (Montipora capitata and Porites compressa) in Kaneohe Bay, Oahu

2019 ◽  
Author(s):  
NS Locatelli ◽  
JA Drew
Keyword(s):  
Population Structure ◽  
Isolation By Distance ◽  
Geographic Distance ◽  
High Energy ◽  
Small Scale ◽  
Coral Host ◽  
Montipora Capitata ◽  
Porites Compressa ◽  
Kaneohe Bay ◽  
Yearly Average

AbstractAs the effects of anthropogenic climate change grow, mass coral bleaching events are expected to increase in severity and extent. Much research has focused on the environmental stressors themselves, symbiotic community compositions, and transcriptomics of the coral host. Globally, fine-scale population structure of corals is understudied. This study reports patterns of population structure and clonal prevalence found in Montipora capitata and Porites compressa in Kaneohe Bay, Oahu. Generated using ddRAD methods, genetic data reveals different patterns in each taxa despite them being exposed to the same environmental conditions. STRUCTURE and site-level pairwise FST analyses suggest population structure in M. capitata resembling isolation by distance. Mantel tests show strong, significant FST correlations in M. capitata in relation to geographic distance, water residence time, and salinity and temperature variability (range) at different time scales. STRUCTURE did not reveal strong population structure in P. compressa. FST correlation was found in P. compressa in relation to yearly average sea surface height. We also report high prevalence of clonal colonies in P. compressa in outer bay sites exposed to storms and high energy swells. Amongst only outer bay sites, 7 out of 23 sequenced individuals were clones of other colonies. Amongst all 47 sequenced P. compressa individuals, 8 were clones. Only one clone was detected in M. capitata. Moving forward, it is crucial to consider these preexisting patterns relating to genetic diversity when planning and executing conservation and restoration initiatives. Recognizing that there are differences in population structure and diversity between coral taxa, even on such small-scales, is important as it suggests that small-scale reefs must be managed by species rather than by geography.

scholarly journals Population connectivity predicts vulnerability to white-nose syndrome in the Chilean myotis (Myotis chiloensis) - a genomics approach

2020 ◽  
Author(s):  
Thomas M. Lilley ◽  
Tiina M. Sävilammi TM ◽  
Gonzalo Ossa ◽  
Anna S Blomberg ◽  
Anti Vasemägi ◽  
...  
Keyword(s):  
Population Structure ◽  
Isolation By Distance ◽  
Geographic Distance ◽  
Population Connectivity ◽  
Tierra Del Fuego ◽  
Secondary Contact ◽  
Mountain Range ◽  
Population Declines ◽  
White Nose Syndrome ◽  
The North

ABSTRACTDespite its peculiar distribution, the biology of the southernmost bat species in the world, the Chilean myotis (Myotis chiloensis), has garnered little attention so far. The species has a north-south distribution of c. 2800 km, mostly on the eastern side of the Andes mountain range. Use of extended torpor occurs in the southernmost portion of the range, putting the species at risk of bat white-nose syndrome (WNS), a fungal disease responsible for massive population declines in North American bats. Here, we examined how geographic distance and topology would be reflected in the population structure of M. chiloensis along the majority of its range using a double digestion RAD-tag method. We sampled 66 individuals across the species range and discovered pronounced isolation-by-distance. Furthermore, and surprisingly, we found higher degrees of heterozygosity in the southernmost populations compared to the north. A coalescence analysis revealed that our populations may still not have reached secondary contact after the Last Glacial Maximum. As for the potential spread of pathogens, such as the fungus causing WNS, connectivity among populations was noticeably low, especially between the southern hibernatory populations in the Magallanes and Tierra del Fuego, and more northerly populations. This suggests the probability of geographic spread of the disease from the north through bat-to-bat contact to susceptible populations is low. The study presents a rare case of defined population structure in a bat species and warrants further research on the underlying factors contributing to this.

scholarly journals Genetic patterns in Montipora capitata across an environmental mosaic in Kaneohe Bay

2021 ◽  
Author(s):  
Carlo Caruso ◽  
Mariana Rocha de Souza ◽  
Lupita Ruiz-Jones ◽  
Dennis Conetta ◽  
Joshua Hancock ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Genetic Relatedness ◽  
Environmental Gradients ◽  
Isolation By Distance ◽  
Spatial Genetic Structure ◽  
Reproductive Mode ◽  
Montipora Capitata ◽  
Kaneohe Bay ◽  
Relative Contribution ◽  
Degree Heating Weeks

Spatial genetic structure (SGS) is important to a population's ability to adapt to environmental change. For species that reproduce both sexually and asexually, the relative contribution of each reproductive mode has important ecological and evolutionary implications because asexual reproduction can have a strong effect on SGS. Reef building corals reproduce sexually, but many species also propagate asexually under certain conditions. In order to understand SGS and the relative importance of reproductive mode across environmental gradients, we evaluated genetic relatedness in almost 600 colonies of Montipora capitata across 30 environmentally characterized sites in Kaneohe Bay, Oahu, Hawaii using low-depth restriction digest associated sequencing. Clonal colonies were relatively rare overall but influenced SGS. Clones were located significantly closer to one another spatially than average colonies and were more frequent on sites where wave energy was relatively high, suggesting a strong role of mechanical breakage in their formation. Excluding clones, we found no evidence of isolation by distance within sites or across the bay. Several environmental characteristics were significant predictors of the underlying genetic variation (including degree heating weeks, time spent above 30°C, depth, sedimentation rate and wave height); however, they only explained 5% of this genetic variation. Our results show that colony fragmentation contributes to the ecology of M. capitata at local scales and that genetic diversity is maintained despite strong environmental gradients in a highly impacted ecosystem, suggesting potential for broad adaptation or acclimatization in this population.

scholarly journals Population Connectivity Predicts Vulnerability to White-Nose Syndrome in the Chilean Myotis (Myotis chiloensis) - A Genomics Approach

2020 ◽  
Vol 10 (6) ◽  
pp. 2117-2126
Author(s):  
Thomas M. Lilley ◽  
Tiina Sävilammi ◽  
Gonzalo Ossa ◽  
Anna S. Blomberg ◽  
Anti Vasemägi ◽  
...  
Keyword(s):  
Population Structure ◽  
Isolation By Distance ◽  
Geographic Distance ◽  
Population Connectivity ◽  
Tierra Del Fuego ◽  
Secondary Contact ◽  
Mountain Range ◽  
Population Declines ◽  
White Nose Syndrome ◽  
The North

Despite its peculiar distribution, the biology of the southernmost bat species in the world, the Chilean myotis (Myotis chiloensis), has garnered little attention so far. The species has a north-south distribution of c. 2800 km, mostly on the eastern side of the Andes mountain range. Use of extended torpor occurs in the southernmost portion of the range, putting the species at risk of bat white-nose syndrome, a fungal disease responsible for massive population declines in North American bats. Here, we examined how geographic distance and topology would be reflected in the population structure of M. chiloensis along the majority of its range using a double digestion RAD-seq method. We sampled 66 individuals across the species range and discovered pronounced isolation-by-distance. Furthermore, and surprisingly, we found higher degrees of heterozygosity in the southernmost populations compared to the north. A coalescence analysis revealed that our populations may still not have reached secondary contact after the Last Glacial Maximum. As for the potential spread of pathogens, such as the fungus causing WNS, connectivity among populations was noticeably low, especially between the southern hibernatory populations in the Magallanes and Tierra del Fuego, and more northerly populations. This suggests the probability of geographic spread of the disease from the north through bat-to-bat contact to susceptible populations is low. The study presents a rare case of defined population structure in a bat species and warrants further research on the underlying factors contributing to this. See the graphical abstract here. https://doi.org/10.25387/g3.12173385

Genetic subdivision of Roe’s abalone, Haliotis roei Grey (Mollusca : Gastropoda), in south-western Australia

2000 ◽  
Vol 51 (7) ◽  
pp. 679 ◽  
Author(s):  
Boze Hancock
Keyword(s):  
Population Structure ◽  
Gene Flow ◽  
Western Australia ◽  
Isolation By Distance ◽  
Geographic Distance ◽  
Starch Gel Electrophoresis ◽  
Apparent Contradiction ◽  
Allelic Frequencies ◽  
Starch Gel ◽  
Substantial Heterogeneity

Starch-gel electrophoresis was used to investigate population structure of the commercially and recreationally exploited abalone, Haliotis roei. The standardized variance in allelic frequencies among 10 sites in south-western Australia indicated relatively high levels of gene flow across the 3000 km range sampled (mean FST 0.009). Sites showed no striking geographic trends in allelic frequencies or apparent clustering, on the basis of multidimensional scaling of GST as a measure of genetic dissimilarity. A population structure of isolation-by-distance was evident when pairwise measures of GST were related to geographic distance (r = 0.45, P <0.001). This relationship was evident beneath relatively high levels of variability among pairwise comparisons of GST for sites separated by small distances. The area of complete genetic mixing, or neighbourhood size, was estimated to be less than the distance between the two nearest sites, or 13 km. The apparent contradiction between relatively high levels of gene flow across the species’ distribution, as indicated by a low average FST, and substantial heterogeneity between sites separated by 10s of kilometres, is discussed in the context of the species’ biology, and management of the fishery.

scholarly journals Population genetics of Aedes albopictus (Diptera: Culicidae) in its native range in Lao People’s Democratic Republic

2019 ◽  
Vol 12 (1) ◽  
Author(s):  
Maysa Tiemi Motoki ◽  
Dina Madera Fonseca ◽  
Elliott Frederic Miot ◽  
Bruna Demari-Silva ◽  
Phoutmany Thammavong ◽  
...  
Keyword(s):  
Population Structure ◽  
Gene Flow ◽  
Aedes Albopictus ◽  
Isolation By Distance ◽  
Genetic Locus ◽  
Lao Pdr ◽  
Phylogenetic Network ◽  
Population Expansion ◽  
Recent Population Expansion ◽  
The Usa

Abstract Background The Asian tiger mosquito, Aedes (Stegomyia) albopictus (Skuse) is an important worldwide invasive species and can be a locally important vector of chikungunya, dengue and, potentially, Zika. This species is native to Southeast Asia where populations thrive in both temperate and tropical climates. A better understanding of the population structure of Ae. albopictus in Lao PDR is very important in order to support the implementation of strategies for diseases prevention and vector control. In the present study, we investigated the genetic variability of Ae. albopictus across a north-south transect in Lao PDR. Methods We used variability in a 1337-bp fragment of the mitochondrial cytochrome c oxidase subunit 1 gene (cox1), to assess the population structure of Ae. albopictus in Lao PDR. For context, we also examined variability at the same genetic locus in samples of Ae. albopictus from Thailand, China, Taiwan, Japan, Singapore, Italy and the USA. Results We observed very high levels of genetic polymorphism with 46 novel haplotypes in Ae. albopictus from 9 localities in Lao PDR and Thailand populations. Significant differences were observed between the Luangnamtha population and other locations in Lao PDR. However, we found no evidence of isolation by distance. There was overall little genetic structure indicating ongoing and frequent gene flow among populations or a recent population expansion. Indeed, the neutrality test supported population expansion in Laotian Ae. albopictus and mismatch distribution analyses showed a lack of low frequency alleles, a pattern often seen in bottlenecked populations. When samples from Lao PDR were analyzed together with samples from Thailand, China, Taiwan, Japan, Singapore, Italy and the USA, phylogenetic network and Bayesian cluster analysis showed that most populations from tropical/subtropical regions are more genetically related to each other, than populations from temperate regions. Similarly, most populations from temperate regions are more genetically related to each other, than those from tropical/subtropical regions. Conclusions Aedes albopictus in Lao PDR are genetically related to populations from tropical/subtropical regions (i.e. Thailand, Singapore, and California and Texas in the USA). The extensive gene flow among locations in Lao PDR indicates that local control is undermined by repeated introductions from untreated sites.

Characterizing population structure of coral-associated fauna from mesophotic and shallow habitats in the Caribbean

2018 ◽  
Vol 99 (3) ◽  
pp. 619-629 ◽  
Author(s):  
Alex J. Veglia ◽  
Nicholas M. Hammerman ◽  
Carlos R. Rivera Rosaly ◽  
Matthew Q. Lucas ◽  
Alexandra Galindo Estronza ◽  
...  
Keyword(s):  
Population Structure ◽  
Puerto Rico ◽  
Marine Invertebrates ◽  
Geographic Distance ◽  
Harpacticoid Copepod ◽  
Coi Gene ◽  
Mitochondrial Coi ◽  
Symbiotic Relationships ◽  
Harpacticoid Copepods ◽  
Obligate Symbiont

Symbiotic relationships are a common phenomenon among marine invertebrates, forming both obligatory and facultative dependencies with their host. Here, we investigate and compare the population structure of two crustacean species associated with both shallow and mesophotic ecosystems: an obligate symbiont barnacle (Ceratoconcha domingensis), of the coral Agaricia lamarcki and a meiobenthic, free-living harpacticoid copepod (Laophontella armata). Molecular analyses of the Cytochrome Oxidase Subunit I (COI) gene revealed no population structure between mesophotic and shallow barnacle populations within south-west Puerto Rico (ΦST = 0.0079, P = 0.33). The absence of population structure was expected due to the pelagic naupliar larvae of the barnacles and the connectivity patterns exhibited by the coral itself within the same region. Laophontella armata exhibited significant structure based on the mitochondrial COI gene between the mesophotic reef ecosystem of El Seco, Puerto Rico and mangrove sediments of Curaçao (ΦST = 0.2804, P = 0.0). The El Seco and Curaçao copepods shared three COI haplotypes despite the obligatory benthic development of harpacticoid copepods and the geographic distance between the two locations. Three other COI haplotypes from El Seco exhibited higher than expected (up to 7%) intra-species variability, potentially representing three new cryptic species of harpacticoid copepods or rare, deeply divergent lineages of L. armata. This result is evidence for the urgent need of a deeper investigation into the meiofauna diversity associated with mesophotic coral ecosystems (MCEs), arguably the most diverse metazoan component of MCEs.

scholarly journals Learning in the Anthropocene

2021 ◽  
Vol 10 (6) ◽  
pp. 233
Author(s):  
Rasmus Karlsson
Keyword(s):  
Renewable Energy Sources ◽  
Local Level ◽  
High Energy ◽  
Small Scale ◽  
Optical Illusions ◽  
Global Trends ◽  
Energy Technologies ◽  
Climate Action ◽  
Enlightenment Project ◽  
Global Trajectory

While the precautionary principle may have offered a sound basis for managing environmental risk in the Holocene, the depth and width of the Anthropocene have made precaution increasingly untenable. Not only have many ecosystems already been damaged beyond natural recovery, achieving a sustainable long-term global trajectory now seem to require ever greater measures of proactionary risk-taking, in particular in relation to the growing need for climate engineering. At the same time, different optical illusions, arising from temporary emissions reductions due to the COVID-19 epidemic and the local deployment of seemingly “green” small-scale renewable energy sources, tend to obscure worsening global trends and reinforce political disinterest in developing high-energy technologies that would be more compatible with universal human development and worldwide ecological restoration. Yet, given the lack of feedback between the global and the local level, not to mention the role of culture and values in shaping perceptions of “sustainability”, the necessary learning may end up being both epistemologically and politically difficult. This paper explores the problem of finding indicators suitable for measuring progress towards meaningful climate action and the restoration of an ecologically vibrant planet. It is suggested that such indicators are essentially political as they reflect, not only different assessments of technological feasibility, but orientations towards the Enlightenment project.

scholarly journals Environmental controls on surf zone injuries on high-energy beaches

2019 ◽  
Vol 19 (10) ◽  
pp. 2183-2205 ◽  
Author(s):  
Bruno Castelle ◽  
Tim Scott ◽  
Rob Brander ◽  
Jak McCarroll ◽  
Arthur Robinet ◽  
...  
Keyword(s):  
Wave Height ◽  
Surf Zone ◽  
High Tide ◽  
High Energy ◽  
Water Levels ◽  
Small Scale ◽  
Beach Morphology ◽  
Environmental Controls ◽  
Flow Activity ◽  
Incident Waves

Abstract. The two primary causes of surf zone injuries (SZIs) worldwide, including fatal drowning and severe spinal injuries, are rip currents (rips) and shore-break waves. SZIs also result from surfing and bodyboarding activity. In this paper we address the primary environmental controls on SZIs along the high-energy meso–macro-tidal surf beach coast of southwestern France. A total of 2523 SZIs recorded by lifeguards over 186 sample days during the summers of 2007, 2009 and 2015 were combined with measured and/or hindcast weather, wave, tide, and beach morphology data. All SZIs occurred disproportionately on warm sunny days with low wind, likely because of increased beachgoer numbers and hazard exposure. Relationships were strongest for shore-break- and rip-related SZIs and weakest for surfing-related SZIs, the latter being also unaffected by tidal stage or range. Therefore, the analysis focused on bathers. More shore-break-related SZIs occur during shore-normal incident waves with average to below-average wave height (significant wave height, Hs = 0.75–1.5 m) and around higher water levels and large tide ranges when waves break on the steepest section of the beach. In contrast, more rip-related drownings occur near neap low tide, coinciding with maximised channel rip flow activity, under shore-normal incident waves with Hs >1.25 m and mean wave periods longer than 5 s. Additional drowning incidents occurred at spring high tide, presumably due to small-scale swash rips. The composite wave and tide parameters proposed by Scott et al. (2014) are key controlling factors determining SZI occurrence, although the risk ranges are not necessarily transferable to all sites. Summer beach and surf zone morphology is interannually highly variable, which is critical to SZI patterns. The upper beach slope can vary from 0.06 to 0.18 between summers, resulting in low and high shore-break-related SZIs, respectively. Summers with coast-wide highly (weakly) developed rip channels also result in widespread (scarce) rip-related drowning incidents. With life risk defined in terms of the number of people exposed to life threatening hazards at a beach, the ability of morphodynamic models to simulate primary beach morphology characteristics a few weeks or months in advance is therefore of paramount importance for predicting the primary surf zone life risks along this coast.

Genetic diversity and population structure of Escherichia coli from neighboring small-scale dairy farms

2011 ◽  
Vol 49 (5) ◽  
pp. 693-702 ◽  
Author(s):  
Jesús Andrei Rosales-Castillo ◽  
Ma. Soledad Vázquez-Garcidueñas ◽  
Hugo Álvarez-Hernández ◽  
Omar Chassin-Noria ◽  
Alba Irene Varela-Murillo ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Genetic Diversity ◽  
Population Structure ◽  
Dairy Farms ◽  
Small Scale ◽  
Small Scale Dairy

A Frequency-Domain-Based Algorithm for Detecting Microseismicity Using Dense Surface Seismic Arrays

2021 ◽  
Author(s):  
Maria Mesimeri ◽  
Kristine L. Pankow ◽  
James Rutledge
Keyword(s):  
Frequency Domain ◽  
Detection Method ◽  
Maximum Amplitude ◽  
High Energy ◽  
Aftershock Sequence ◽  
Anthropogenic Activity ◽  
Small Scale ◽  
Seismic Events ◽  
Small Magnitude ◽  
Seismic Arrays

ABSTRACT We propose a new frequency-domain-based algorithm for detecting small-magnitude seismic events using dense surface seismic arrays. Our proposed method takes advantage of the high energy carried by S waves, and approximate known source locations, which are used to rotate the horizontal components to obtain the maximum amplitude. By surrounding the known source area with surface geophones, we achieve a favorable geometry for locating the detected seismic events with the backprojection method. To test our new detection method, we used a dense circular array, consisting of 151 5 Hz three-component geophones, over a 5 km aperture that was in operation at the Utah Frontier Observatory for Research in Geothermal Energy (FORGE) in southcentral Utah. We apply the new detection method during a small-scale test injection phase at FORGE, and during an aftershock sequence of an Mw 4.1 earthquake located ∼30  km north of the geophone array, within the Black Rock volcanic field. We are able to detect and locate microseismic events (Mw&lt;0) during injections, despite the high level of anthropogenic activity, and several aftershocks that are missing from the regional catalog. By comparing our method with known algorithms that operate both in the time and frequency domain, we show that our proposed method performs better in the case of the FORGE injection monitoring, and equally well for the off-array aftershock sequence. Our new method has the potential to improve microseismic event detections even in extremely noisy environments, and the proposed location scheme serves as a direct discriminant between true and false detections.

Sign in / Sign up

Export Citation Format

Share Document