scholarly journals Phloem-mediated spreading of SIGS-derived non-coding RNAs in Hordeum vulgare

2019 ◽  
Author(s):  
D Biedenkopf ◽  
T Will ◽  
T Knauer ◽  
L Jelonek ◽  
ACU Furch ◽  
...  
Keyword(s):  
Rna Interference ◽  
Host Defense ◽  
Vascular System ◽  
Control Plant ◽  
Plant Diseases ◽  
Long Distance ◽  
Rnai Machinery ◽  
Rna Molecules ◽  
Non Coding Rnas ◽  
Long Distance Movement

AbstractSmall (s)RNA molecules are crucial factors in the communication between hosts and their interacting pathogens/pests that can modulate both host defense and microbial virulence/pathogenicity known as cross-kingdom RNA interference (ckRNAi). Consistent with this, sRNAs and their double-stranded (ds)RNA precursors have been adopted to control plant diseases through exogenously applied RNA biopesticides, known as spray-induced gene silencing (SIGS). While RNA spray proved to be effective, the mechanisms underlying the transfer and uptake of SIGS-associated RNAs are inadequately understood. Moreover, the use of the SIGS-technology as a biopesticide will require the systemic spreading of dsRNA/siRNA signals. Our results strongly support the notion of phloem-mediated long-distance movement of SIGS-associated dsRNA and/or siRNA. These findings are significant contributions to our mechanistic understanding of RNA spray technology, as our previous data indicate that SIGS requires the processing of dsRNAs by the fungal RNAi machinery. In summary, our findings support the model that SIGS involves: (i) uptake of sprayed dsRNA by the plant (via stomata); (ii) transfer of apoplastic dsRNAs into the symplast (DCL processing into siRNAs); (iii) systemic translocation of siRNA or unprocessed dsRNA via the vascular system (phloem/xylem); (iv) uptake of apoplastic dsRNA or symplastic dsRNA/siRNA depending on the lifestyle/feeding behavior of the pathogen/pest.

scholarly journals Long-Distance Movement of mRNAs in Plants

Plants ◽  
2020 ◽  
Vol 9 (6) ◽  
pp. 731 ◽  
Author(s):  
Chao Xia ◽  
Cankui Zhang
Keyword(s):  
Vascular System ◽  
Physiological Characteristic ◽  
Small Peptides ◽  
Long Distance ◽  
Systemic Signaling ◽  
Long Distance Transport ◽  
Specific Mrnas ◽  
Multiple Species ◽  
Species Specific ◽  
Long Distance Movement

Long-distance transport of information molecules in the vascular tissues could play an important role in regulating plant growth and enabling plants to cope with adverse environments. Various molecules, including hormones, proteins, small peptides and small RNAs have been detected in the vascular system and proved to have systemic signaling functions. Sporadic studies have shown that a number of mRNAs produced in the mature leaves leave their origin cells and move to distal tissues to exert important physiological functions. In the last 3–5 years, multiple heterograft systems have been developed to demonstrate that a large quantity of mRNAs are mobile in plants. Further comparison of the mobile mRNAs identified from these systems showed that the identities of these mRNAs are very diverse. Although species-specific mRNAs may regulate the unique physiological characteristic of the plant, mRNAs with conserved functions across multiple species are worth more effort in identifying universal physiological mechanisms existing in the plant kingdom.

scholarly journals RNA interference approaches for plant disease control

BioTechniques ◽  
2020 ◽  
Vol 69 (6) ◽  
pp. 469-477
Author(s):  
Yen-Wen Kuo ◽  
Bryce W Falk
Keyword(s):  
Rna Interference ◽  
Disease Control ◽  
Crop Production ◽  
Plant Disease ◽  
Plant Pathogens ◽  
Control Plant ◽  
Cost Effective ◽  
Plant Diseases ◽  
Natural Ecosystems ◽  
Plant Disease Control

Plant diseases caused by a variety of pathogens can have severe effects on crop plants and even plants in natural ecosystems. Despite many effective conventional approaches to control plant diseases, new, efficacious, environmentally sound and cost-effective approaches are needed, particularly with our increasing human population and the effects on crop production and plant health caused by climate change. RNA interference (RNAi) is a gene regulation and antiviral response mechanism in eukaryotes; transgenic and non transgenic plant-based RNAi approaches have shown great effectiveness and potential to target specific plant pathogens and help control plant diseases, especially when no alternatives are available. Here we discuss ways in which RNAi has been used against different plant pathogens, and some new potential applications for plant disease control.

scholarly journals RNA Interference in Fungi: Pathways, Functions, and Applications

2011 ◽  
Vol 10 (9) ◽  
pp. 1148-1155 ◽  
Author(s):  
Yunkun Dang ◽  
Qiuying Yang ◽  
Zhihong Xue ◽  
Yi Liu
Keyword(s):  
Gene Regulation ◽  
Rna Interference ◽  
Small Rna ◽  
Rnai Machinery ◽  
Content Type ◽  
Heterochromatin Formation ◽  
Rna Molecules ◽  
Cellular Processes ◽  
Rna Biogenesis ◽  
Core Components

ABSTRACT Small RNA molecules of about 20 to 30 nucleotides function in gene regulation and genomic defense via conserved eukaryotic RNA interference (RNAi)-related pathways. The RNAi machinery consists of three core components: Dicer, Argonaute, and RNA-dependent RNA polymerase. In fungi, the RNAi-related pathways have three major functions: genomic defense, heterochromatin formation, and gene regulation. Studies of Schizosaccharomyces pombe and Neurospora , and other fungi have uncovered surprisingly diverse small RNA biogenesis pathways, suggesting that fungi utilize RNAi-related pathways in various cellular processes to adapt to different environmental conditions. These studies also provided important insights into how RNAi functions in eukaryotic systems in general. In this review, we will discuss our current understanding of the fungal RNAi-related pathways and their functions, with a focus on filamentous fungi. We will also discuss how RNAi can be used as a tool in fungal research.

3. RNA

2016 ◽  
Author(s):  
Aysha Divan ◽  
Janice A. Royds
Keyword(s):  
Gene Expression ◽  
Protein Synthesis ◽  
Rna Interference ◽  
Ribosomal Rna ◽  
Gene Function ◽  
Transfer Rna ◽  
Vast Number ◽  
Rna Molecules ◽  
Catalytic Rnas ◽  
Non Coding Rnas

The first RNA molecules to be discovered were those involved in protein synthesis, mRNA, transfer RNA (tRNA), and ribosomal RNA (rRNA). In recent years, a vast number of additional RNA molecules have been identified. ‘RNA’ explains that these are non-coding RNAs that are not involved in protein synthesis, but influence many normal cellular and disease processes by regulating gene expression. RNA interference (RNAi) as one of the main ways in which gene expression is regulated is described with applications to therapy. Classes of RNA, including long non-coding RNAs and catalytic RNAs, are explained along with RNA techniques used to study RNA molecule and gene function.

scholarly journals Non-Coding RNA Databases in Cardiovascular Research

2020 ◽  
Vol 6 (3) ◽  
pp. 35
Author(s):  
Deepak Balamurali ◽  
Monika Stoll
Keyword(s):  
Vascular System ◽  
Cardiovascular Research ◽  
Data Repositories ◽  
Protein Coding ◽  
Rna Molecules ◽  
High Throughput Data ◽  
Non Coding Rna ◽  
Non Coding Rnas ◽  
Generation Sequencing

Cardiovascular diseases (CVDs) are of multifactorial origin and can be attributed to several genetic and environmental components. CVDs are the leading cause of mortality worldwide and they primarily damage the heart and the vascular system. Non-coding RNA (ncRNA) refers to functional RNA molecules, which have been transcribed into DNA but do not further get translated into proteins. Recent transcriptomic studies have identified the presence of thousands of ncRNA molecules across species. In humans, less than 2% of the total genome represents the protein-coding genes. While the role of many ncRNAs is yet to be ascertained, some long non-coding RNAs (lncRNAs) and microRNAs (miRNAs) have been associated with disease progression, serving as useful diagnostic and prognostic biomarkers. A plethora of data repositories specialized in ncRNAs have been developed over the years using publicly available high-throughput data from next-generation sequencing and other approaches, that cover various facets of ncRNA research like basic and functional annotation, expressional profile, structural and molecular changes, and interaction with other biomolecules. Here, we provide a compendium of the current ncRNA databases relevant to cardiovascular research.

scholarly journals Assessing long-distance RNA sequence connectivity via RNA-templated DNA–DNA ligation

eLife ◽  
2015 ◽  
Vol 4 ◽  
Author(s):  
Christian K Roy ◽  
Sara Olson ◽  
Brenton R Graveley ◽  
Phillip D Zamore ◽  
Melissa J Moore
Keyword(s):  
Drosophila Melanogaster ◽  
Alternative Splicing ◽  
Single Gene ◽  
Expression Patterns ◽  
Long Distance ◽  
Rna Molecules ◽  
Connectivity Information ◽  
Dna Ligation ◽  
Human Genes ◽  
Non Coding Rnas

Many RNAs, including pre-mRNAs and long non-coding RNAs, can be thousands of nucleotides long and undergo complex post-transcriptional processing. Multiple sites of alternative splicing within a single gene exponentially increase the number of possible spliced isoforms, with most human genes currently estimated to express at least ten. To understand the mechanisms underlying these complex isoform expression patterns, methods are needed that faithfully maintain long-range exon connectivity information in individual RNA molecules. In this study, we describe SeqZip, a methodology that uses RNA-templated DNA–DNA ligation to retain and compress connectivity between distant sequences within single RNA molecules. Using this assay, we test proposed coordination between distant sites of alternative exon utilization in mouse Fn1, and we characterize the extraordinary exon diversity of Drosophila melanogaster Dscam1.

scholarly journals Bromovirus Movement Protein Conditions for the Host Specificity of Virus Movement Through the Vascular System and Affects Pathogenicity in Cowpea

2000 ◽  
Vol 13 (11) ◽  
pp. 1195-1203 ◽  
Author(s):  
Yasunari Fujita ◽  
Miki Fujita ◽  
Kazuyuki Mise ◽  
Takashi Kobori ◽  
Takeshi Osaki ◽  
...  
Keyword(s):  
Movement Protein ◽  
Vascular System ◽  
Systemic Infection ◽  
Brome Mosaic Virus ◽  
Long Distance ◽  
Mesophyll Cells ◽  
Cowpea Chlorotic Mottle Virus ◽  
Chlorotic Mottle Virus ◽  
Chlorotic Mottle ◽  
Long Distance Movement

Previously, we reported that CCMV(B3a), a hybrid of bromovirus Cowpea chlorotic mottle virus (CCMV) with the 3a cell-to-cell movement protein (MP) gene replaced by that of cowpea-nonadapted bromovirus Brome mosaic virus (BMV), can form small infection foci in inoculated cowpea leaves, but that expansion of the foci stops between 1 and 2 days postinoculation. To determine whether the lack of systemic movement of CCMV(B3a) is due to restriction of local spread at specific leaf tissue interfaces, we conducted more detailed analyses of infection in inoculated leaves. Tissue-printing and leaf press-blotting analyses revealed that CCMV(B3a) was confined to the inoculated cowpea leaves and exhibited constrained movement into leaf veins. Immunocytochemical analyses to examine the infected cell types in inoculated leaves indicated that CCMV(B3a) was able to reach the bundle sheath cells through the mesophyll cells and successfully infected the phloem cells of 50% of the examined veins. Thus, these data demonstrate that the lack of long-distance movement of CCMV(B3a) is not due to an inability to reach the vas-culature, but results from failure of the virus to move through the vascular system of cowpea plants. Further, a previously identified 3a coding change (A776C), which is required for CCMV(B3a) systemic infection of cowpea plants, suppressed formation of reddish spots, mediated faster spread of infection, and enabled the virus to move into the veins of inoculated cowpea leaves. From these data, and the fact that CCMV(B3a) directs systemic infection in Nicotiana benthamiana, a permissive systemic host for both BMV and CCMV, we conclude that the bromovirus 3a MP engages in multiple activities that contribute substantially to host-specific long-distance movement through the phloem.

scholarly journals A Long-Distance Translocatable Phloem Protein from Cucumber Forms a Ribonucleoprotein Complex In Vivo with Hop Stunt Viroid RNA

2004 ◽  
Vol 78 (18) ◽  
pp. 10104-10110 ◽  
Author(s):  
Gustavo Gómez ◽  
Vicente Pallás
Keyword(s):  
Rna Binding ◽  
Direct Interaction ◽  
Binding Motif ◽  
Long Distance ◽  
Rna Molecules ◽  
Stunt Viroid ◽  
Phloem Protein ◽  
Hop Stunt Viroid ◽  
Long Distance Movement

ABSTRACT Viroids are highly structured plant pathogenic RNAs that do not code for any protein, and thus, their long-distance movement within the plant must be mediated by direct interaction with cellular factors, the nature of which is presently unknown. In addition to this type of RNAs, recent evidence indicates that endogenous RNAs move through the phloem acting as macromolecular signals involved in plant defense and development. The form in which these RNA molecules are transported to distal parts of the plant is unclear. Viroids can be a good model system to try to identify translocatable proteins that could assist the vascular movement of RNA molecules. Here, we demonstrate by use of immunoprecipitation experiments, that the phloem protein 2 from cucumber (CsPP2) is able to interact in vivo with a viroid RNA. Intergeneric graft assays revealed that both the CsPP2 and the Hop stunt viroid RNA were translocated to the scion. The translocated viroid is symptomatic in the nonhost scion, indicating that the translocated RNA is functional. The CsPP2 gene was cloned and sequenced. The analysis of its primary structure revealed the existence of a potential double-spaced-RNA-binding motif, previously identified in a set of proteins that bind to highly structured RNAs, which could explain its RNA-binding properties. The possible involvement of this phloem protein in assisting the long-distance movement of the viroid RNA within the plant is discussed.

From sand to sea: tracing the production and trade in glass beads from the 10th-century Cirebon shipwreck in the Java Sea

2020 ◽  
Author(s):  
Carolyn Swan
Keyword(s):  
Glass Production ◽  
Glass Beads ◽  
Rock Crystal ◽  
Long Distance ◽  
Merchant Ship ◽  
The Indian Ocean ◽  
Java Sea ◽  
Indian Ocean World ◽  
Long Distance Movement ◽  
Lapis Lazuli

Around the year 970 CE, a merchant ship carrying an assortment of goods from East Africa, Persia, India, Sri Lanka, Southeast Asia, and China foundered and sank to the bottom of the Java Sea. Thousands of beads made from many different materials—ceramic, jet, coral, banded stone, lapis lazuli, rock crystal, sapphire, ruby, garnet, pearl, gold, and glass—attest to the long-distance movement and trade of these small and often precious objects throughout the Indian Ocean world. The beads made of glass are of particular interest, as closely-dated examples are very rare and there is some debate as to where glass beads were being made and traded during this period of time. This paper examines 18 glass beads from the Cirebon shipwreck that are now in the collection of Qatar Museums, using a comparative typological and chemical perspective within the context of the 10th-century glass production. Although it remains uncertain where some of the beads were made, the composition of the glass beads points to two major production origins for the glass itself: West Asia and South Asia.

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