scholarly journals Capturing the transcription factor interactome in response to sub-lethal insecticide exposure

2020 ◽  
Author(s):  
Victoria A Ingham ◽  
Sara Elg ◽  
Sanjay C Nagi ◽  
Frank Dondelinger

AbstractThe increasing levels of pesticide resistance in agricultural pests and disease vectors represents a threat to both food security and global health. As insecticide resistance intensity strengthens and spreads, the likelihood of a pest encountering a sub-lethal dose of pesticide dramatically increases. Here, we apply dynamic Bayesian networks to a transcriptome time-course generated using sub-lethal pyrethroid exposure on a highly resistant Anopheles coluzzii population. The model accounts for circadian rhythm and ageing effects allowing high confidence identification of transcription factors with key roles in pesticide response. The associations generated by this model show high concordance with lab-based validation and identifies 44 transcription factors regulating insecticide-responsive transcripts. We identify six key regulators, with each displaying differing enrichment terms, demonstrating the complexity of pesticide response. The considerable overlap of resistance mechanisms in agricultural pests and disease vectors strongly suggests that these findings are relevant in a wide variety of pest species.

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Fathiya M. Khamis ◽  
Fidelis L. O. Ombura ◽  
Inusa J. Ajene ◽  
Komivi S. Akutse ◽  
Sevgan Subramanian ◽  
...  

AbstractWhiteflies (Hemiptera: Aleyrodidae) are devastating agricultural pests of economic importance vectoring pathogenic plant viruses. Knowledge on their diversity and distribution in Kenya is scanty, limiting development of effective sustainable management strategies. The present study is aimed at identifying whitefly pest species present in Kenya across different agroecological zones and establish predictive models for the most abundant species in Africa. Whiteflies were sampled in Kenya from key crops known to be severely infested and identified using 16S rRNA markers and complete mitochondrial genomes. Four whitefly species were identified: Aleyrodes proletella, Aleurodicus dispersus, Bemisia afer and Trialeurodesvaporariorum, the latter being the most dominant species across all the agroecology. The assembly of complete mitogenomes and comparative analysis of all 13 protein coding genes confirmed the identities of the four species. Furthermore, prediction spatial models indicated high climatic suitability of T. vaporariorum in Africa, Europe, Central America, parts of Southern America, parts of Australia, New Zealand and Asia. Consequently, our findings provide information to guide biosecurity agencies on protocols to be adopted for precise identification of pest whitefly species in Kenya to serve as an early warning tool against T. vaporariorum invasion into unaffected areas and guide appropriate decision-making on their management.


2020 ◽  
Author(s):  
Chunji Jiang ◽  
Xinlin Li ◽  
Jixiang Zou ◽  
Jingyao Ren ◽  
Chunyi Jin ◽  
...  

Abstract Background Peanut is one of the most important world oil crops. Peanut qualities and yields are restricted dramatically by abiotic stresses particularly by drought. Therefore, it would be beneficial to gain a comprehensive understanding on regulatory mechanisms of the peanut genomic transcriptional activities responding to drought, and hopefully extracting peanut molecular drought-resistance mechanisms. Results In this study, two peanut varieties NH5 (resistant) and FH18 (sensitive) which showed significantly differential drought-resistance were screened from twenty-three main commercial peanut cultivars and used for physiological characterization and transcriptomic analysis. NH5 leaves showed higher water and GSH contents, faster stomatal closure and lower relative conductivity (REC) than FH18. Under the time-course of 0 h (CK), 4 h (DT1), 8 h (DT2) and 24 h (DT3), drought-treatments tent to exert repressive impacts on peanut transcriptomes since the number of down-regulated differential expressed genes (DEGs) increased with the progression of treatments in both varieties. Conclusions Nevertheless, NH5 seemed to maintain stabler transcriptomic dynamics than FH18. Furthermore, annotations of identified DEGs implicated that signal transduction, elimination of reactive oxygen species, maintenance of cell osmotic potential were key drought-resistance-related pathways. Last, examination of ABA and SA components suggested that the fast stomata closure in NH5 was likely to be mediated through SA rather than ABA signaling. In all, these results have not only provided us comprehensive pictures of peanut drought transcriptomic changes, but also laid a foundation for further identification of the molecular drought tolerance mechanism in peanut and other oil crops.


Author(s):  
Adandé A Medjigbodo ◽  
Luc S Djogbenou ◽  
Aubin A Koumba ◽  
Laurette Djossou ◽  
Athanase Badolo ◽  
...  

Abstract An effective control of malaria vectors requires an extensive knowledge of mechanisms underlying the resistance-phenotypes developed by these vectors against insecticides. We investigated Anopheles gambiae mosquitoes from Benin and Togo for their intensity of insecticide resistance and we discussed the involvement of genotyped mechanisms in the resistance-phenotypes observed. Three- to five-day-old adult mosquitoes emerged from field and laboratory An. gambiae larvae were assayed using WHO tube intensity tests against various doses of deltamethrin: 1× (0.05%); 2× (0.1%); 5× (0.25%); 7.5× (0.375%) and those of pirimiphos-methyl: 0.5× (0.125%); 1× (0.25%). Members of An. gambiae complex were screened in field populations using polymerase chain reaction (PCR) assays. The presence of kdrR(1014F/1014S) and ace-1R(119S) mutations was also investigated using TaqMan and PCR-RFLP techniques, respectively. Anopheles gambiae from field were very resistant to deltamethrin, whereas KisKdr and AcerKdrKis strains displayed 100% mortality rates at 2× the diagnostic dose. In contrast, the field mosquitoes displayed a low resistance-intensity against 1× the diagnostic dose of pirimiphos-methyl, whereas AcerKis and AcerKdrKis strains showed susceptibility at 0.5× the diagnostic dose. Anopheles gambiae s.s., Anopheles coluzzii, and Anopheles arabiensis were identified. Allelic frequencies of kdrR (1014F) and ace-1R (119S) mutations in the field populations varied from 0.65 to 1 and 0 to 0.84, respectively. The field An. gambiae displayed high-resistance levels against deltamethrin and pirimiphos-methyl when compared with those of the laboratory An. gambiae-resistant strains. These results exhibit the complexity of underlying insecticide resistance mechanisms in these field malaria vectors.


2020 ◽  
Vol 2020 ◽  
pp. 1-9
Author(s):  
Cuellar-Rufino Sergio ◽  
Zepeda Rossana Citlali ◽  
Flores-Muñoz Mónica ◽  
Santiago-Roque Isela ◽  
Arroyo-Helguera Omar

Overweight and obesity are defined as excessive and abnormal fat accumulation that is harmful to health. This study analyzes the effect of different concentrations of the lugol solution (molecular iodine dissolved in potassium iodide) on lipolysis in cultured 3T3-L1-differentiated adipocytes. The mature adipocytes were treated with doses from 1 to 100 µm of lugol for 0.5, 6, and 24 h. The results showed that mature adipocytes exposed to lugol decrease their viability and increase caspase-3 activity with a lethal dose (LD50) of 473 µm. In mature adipocytes, lugol decreased the total intracellular lipid content, being significant at doses of 10 and 100 µm after 6 and 24 h of treatment (P<0.01), and the accumulation of intracellular triglycerides decreased after 24 h of exposure to lugol (P<0.05). Lugol treatment significantly increases the release of glycerol to the culture medium (P<0.05). The levels of adipocyte-specific transcription factors C/EBP-α were downregulated and PPAR-γ upregulated after 30 min with lugol. These results indicate a lipolytic effect of lugol dependent on PPAR-γ and C/EBP-α expression in mature 3T3-L1 adipocytes.


2015 ◽  
Vol 105 (6) ◽  
pp. 712-716
Author(s):  
E. AlSuhaibani ◽  
C.C. Voudouris ◽  
R. Al-Atiyat ◽  
A. Kotzamumin ◽  
J. Vontas ◽  
...  

AbstractAphids are important agricultural pests worldwide. Their control is largely based on chemical insecticides. One species that shows important invasive abilities and host-plant-related differences is Therioaphis trifolii (Monell) (Hemiptera: Aphididae). T. trifolii maculata, also known as spotted alfalfa aphid (SAA), can be very injurious to alfalfa crops in certain regions, such as in Saudi Arabia for effective control it is essential to diagnose and monitor the resistance mechanisms in the SAA populations. In the present study, we analysed acetylcholinesterase (ace) target site insensitivity mechanisms. A 650 bp length DNA containing the putative acetylcholinesterase (ace1) precursor was obtained and compared with other Hemipteran species. The sequences of many individual aphids collected from alfalfa crops in Saudi Arabia were analysed for the presence of resistance mutations: no resistance mutations were found at the resistance mutation loci 302; however, the presence of a serine–phenylalanine substitution (S431F) was identified in one individual. The S431F substitution, has been shown to confer significant levels of both organophosphate and carbamate resistance in other aphid species, and is now found for the first time in T. trifolii. We subsequently developed a simple polymerase chain reaction–restriction fragment length polymorphism assays for the S431F mutation, using a TaqI restriction site destroyed by the S431F mutation. The novel diagnostic assay may support the implementation of Insecticide Resistance Management strategies, for the control of SAA in alfalfa crops in the Kingdom of Saudi Arabia, and other countries worldwide.


2016 ◽  
Vol 36 (1) ◽  
pp. 23-32 ◽  
Author(s):  
Devyani Swami ◽  
Hitendra N Karade ◽  
Jyotiranjan Acharya ◽  
Pravin Kumar

In vivo antidotal efficacy of new bis- quaternary 2-(hydroxyimino)- N-(pyridin-3yl) acetamide derivatives (HNK series), to counter multiples of lethal doses of nerve agent sarin (GB) and reactivation of acetylcholinesterase (AChE), was evaluated in Swiss albino mice. [Protection index PI; median lethal dose (LD50) of sarin with treatment/LD50 of sarin] was estimated, using 0.05, 0.10, and 0.20 LD50 as treatment doses of all the oximes with atropine against sarin poisoning. Dose-dependent time course study was conducted at 0.2, 0.4 and 0.8 LD50 dose of sarin for estimating maximum AChE inhibition. At optimized time (15 min), in vivo enzyme half inhibition concentration (IC50) was calculated. AChE reactivation efficacy of HNK series and pralidoxime (2-PAM) were determined by plotting shift of log IC50 doses. HNK-102 with atropine showed three fold higher PI compared to 2-PAM. In vivo IC50 of sarin for brain and serum AChE was found to be 0.87 LD50 (139.2 µg/kg) and 0.48 LD50 (77.23 µg/kg), respectively. Treatment with HNK-102 and HNK-111 (equal to their 0.20LD50) significantly reactivated sarin-intoxicated AChE ( p < 0.05) at 2× IC50 dose of sarin, compared to 2-PAM. The study revealed that HNK-102 oxime was three times more potent as antidote, for acute sarin poisoning compared to 2-PAM in vivo.


Blood ◽  
2005 ◽  
Vol 106 (11) ◽  
pp. 3929-3929
Author(s):  
R. P. Weitzel ◽  
Y. Huang ◽  
L. Fanning ◽  
M. Kozik ◽  
P. Leahy ◽  
...  

Abstract Background. Graft versus host disease (GVHD) after allogeneic stem cell transplantation is associated with significant morbidity and mortality and targeted therapies are needed. The transcription factor nuclear factor of activated T-cells 1 (NFAT1) is known to interact with various other proteins, including AP-1 (fos/jun heterodimer), regulating both active immune responses and T-cell anergy. We have previously demonstrated lower expression of NFAT-associated transcripts via microarray, including IFN-γ, TNF-α, M-CSF, IL-3, 4, 5, and 13, IL-2R-α, CD40L, MIP1-α, as well as related transcription factors such as JunB, FOSL1, STAT4, T-bet, and c-maf in umbilical cord blood (UCB) CD4+ cells following primary stimulation when compared to cells obtained from adult blood (AB). We hypothesize a critical role for these NFAT1-dependent factors in the increased proliferation, decreased cytokine production seen in UCB, and lower incidence of GVHD following UCB transplantation. Here we present data more closely exploring the behavior of NFAT1 and associated genes in both UCB and AB CD4+ T-cells following primary stimulation. Methods. siRNA targeting NFAT1 mRNA was utilized to study the effects of lowered NFAT1 in primary human T-cells. CD14neg/4+ T-cells were isolated from adult peripheral blood by ficoll density gradient and selection by MACS. These cells were then immediately transfected via Nucleofector electroporation (Amaxa Biosystems, Gaithersburg, MD) with siRNA duplexes targeting NFAT1 and Cyclophilin B as well as an eGFP-encoding plasmid along with appropriate controls. Cultures were stimulated by anti-CD3/CD28 for 16h. 24h following transfection. Whole cell protein was harvested from a portion of each culture, and the remaining cells washed with PBS and replaced in non-stimulating media. Protein was extracted from the remaining cells 24h later. Protein lysate was analyzed by western blot for NFAT1, Cyclophilin-B, and β-Actin. Separately, expression of 7 transcripts (FOS, JUN, JUNB, FOSL1, BACH2, NFAM, and NFAT1) was analyzed via real-time PCR (RT-PCR). mRNA was obtained from 4 UCB and 4 AB samples at baseline (0h) (n=2) and 16h (n=2) of stimulation, using β-2-microglobulin as an endogenous control. Results. Transfection efficiency was measured to be approximately 70% via fluorescence microscopy of the eGFP-transfected culture. Our data indicate marginal reduction of NFAT1 protein at 24h. Notably after 48h approximately 65% knockdown is evident. Time course studies to determine the stability of siRNA-mediated NFAT1 knockdown are ongoing. No significant increase in the level of NFAT1 mRNA as measured by RT-PCR was detected. This suggests that the increase in NFAT1 protein levels post stimulation may not be a result of transcriptional regulation. Both UCB and AB samples exhibited a strong (15 fold) increase in FOSL1 transcription, and confirmed the enhanced up-regulation (about 3 fold) in the AB sample seen in microarray. Conclusions. Our data elucidate differences in the transcriptional program between UCB and AB T-cells, suggesting a crucial role for post-transcriptional events in the regulation of NFAT1 and its associated genes. Our findings identify differing regulation and expression of transcription factors in UCB vs. AB T-cells that may underlie the lower incidence and severity of GVHD seen in patients infused with UCB-derived grafts, and implicate additional elements which may modulate UCB T-cell alloreactivity. Studies to analyze the direct effects of decreased NFAT1 expression on relevant cytokines and other signaling molecules are currently ongoing.


1994 ◽  
Vol 344 (1309) ◽  
pp. 313-324 ◽  

The inheritance of most genes is tightly controlled, governed by the rules of mendelian inheritance if nuclear or uniparental inheritance if cytoplasmic. A few notable genes and cytoplasmic genomes have escaped this regulation. Such genes may spread by increasing their own rate of transmission despite reducing host fitness and may be regarded as ‘selfish’. Their population genetics are described and it appears they may impose a significant genetic load on the host population. Modern molecular techniques may enable similar loads to be imposed on pest species either by transferring selfish genes between species, or by linking deleterious genes to a selfish locus. Alternatively, ‘modifier’ genes that eliminate the virulent, or disease vectorial capacity, of the pest population may be introduced by linkage to a selfish locus. Selfish elements present in multiple copies may be preferable to single-copy elements as the former are capable of a larger reduction in host fitness. The practical application of these agents depends on five factors: (i) the rate of ‘reversion’ to a non-selfish form; (ii) the evolution of host repressor systems; (iii) their effect on host fitness, which determines their rate of invasion; (iv) the mechanism regulating host population size in the field; and (v) their ease of manipulation in the laboratory. The first two factors are the most uncertain in most systems, but should be amenable to experimental analysis. It is proposed that the development of such techniques may result in powerful new methods of population control which may be applied to both agricultural pests and disease vectors.


BMC Genomics ◽  
2012 ◽  
Vol 13 (1) ◽  
pp. 554 ◽  
Author(s):  
Cecilia Geijer ◽  
Ivan Pirkov ◽  
Wanwipa Vongsangnak ◽  
Abraham Ericsson ◽  
Jens Nielsen ◽  
...  

2007 ◽  
Vol 97 (1) ◽  
pp. 41-48 ◽  
Author(s):  
L.-L. Gao ◽  
R. Horbury ◽  
R.M. Nair ◽  
K.B. Singh ◽  
O.R. Edwards

AbstractAphids are phloem-feeding insects that damage many important crops throughout the world yet, compared to plant–pathogen interactions, little is known about the mechanisms by which plants become resistant to aphids.Medicago truncatula(barrel medic) is widely considered as the pre-eminent model legume for genetic and biological research and in Australia is an important pasture species. Six cultivars ofM. truncatulawith varying levels of resistance to two pests of pasture and forage legumes, the bluegreen aphidAcyrthosiphon kondoiShinji and the spotted alfalfa aphidTherioaphis trifoliif.maculata. (Buckton) are investigated. Two resistance phenotypes againstT. trifoliif.maculataare described, one of which is particularly effective, killing most aphids within 24 h of infestation. Each resistance phenotype provided a similar but somewhat less effective degree of resistance to the closely-related spotted clover aphidTherioaphis trifolii(Monell). In the case ofA. kondoionly one resistance phenotype was observed, which did not vary among different genetic backgrounds. None of the observed resistance againstA. kondoiorT. trifoliif.maculatasignificantly affected the performance of green peach aphidMyzus persicae(Sulzer) or cowpea aphidAphis craccivoraKoch. The existence of multiple aphid resistance mechanisms in similar genetic backgrounds of this model plant provides a unique opportunity to characterize the fundamental basis of plant defence to these serious agricultural pests.


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