scholarly journals Olorofim and the azoles are antagonistic in Aspergillus fumigatus and functional genomic screens reveal mechanisms of cross resistance.

2021 ◽  
Author(s):  
Norman van Rhijn ◽  
Sam Hemmings ◽  
Clara Valero ◽  
Jorge Amich ◽  
Michael John Bromley

Aspergillosis, in its various manifestations, is a major cause of morbidity and mortality. Very few classes of antifungal have been approved for clinical use to treat these diseases and resistance to the first line therapeutics is increasing. A new class of antifungals, the orotomides, are currently in development with the first compound in this class olorofim in late-stage clinical trials. In this study, we characterise a network of genes that govern olorofim response in A. fumigatus. We reveal that the number of transcription factors that regulate olorofim susceptibility are far fewer than we have previously observed for the azoles and the change in sensitivity observed in these isolates is less extreme. Intriguingly, loss of function in two higher order transcriptional regulators, HapB a member of the heterotrimeric HapB/C/E (CBC) complex or the regulator of nitrogen metabolic genes AreA, leads to cross resistance to both the azoles and olorofim. However, a clinical azole resistant isolate with a point mutation in HapE (hapEP88L) retains sensitivity to olorofim. Our transcriptomic analysis suggests that altered sensitivity to olorofim may emerge via modification of genes involved in the production of pyrimidine biosynthetic precursors. Finally, we also show that the action of the azoles are antagonistic to olorofim in vitro.

2021 ◽  
Author(s):  
Norman van Rhijn ◽  
Sam Hemmings ◽  
Clara Valero ◽  
Jorge Amich ◽  
Michael Bromley

Abstract Aspergillosis, in its various manifestations, is a major cause of morbidity and mortality. Very few classes of antifungal have been approved for clinical use to treat these diseases and resistance to the first line therapeutics is increasing. A new class of antifungals, the orotomides, are currently in development with the first compound in this class olorofim in late-stage clinical trials. In this study, we characterise a network of genes that govern olorofim response in A. fumigatus. We reveal that the number of transcription factors that regulate olorofim susceptibility are far fewer than we have previously observed for the azoles and the change in sensitivity observed in these isolates is less extreme. Intriguingly, loss of function in two higher order transcriptional regulators, HapB a member of the heterotrimeric HapB/C/E (CBC) complex or the regulator of nitrogen metabolic genes AreA, leads to cross resistance to both the azoles and olorofim. However, a clinical azole resistant isolate with a point mutation in HapE (hapEP88L) retains sensitivity to olorofim. Our transcriptomic analysis suggests that altered sensitivity to olorofim may emerge via modification of genes involved in the production of pyrimidine biosynthetic precursors. Finally, we also show that the action of the azoles are antagonistic to olorofim in vitro.


Pathogens ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 175
Author(s):  
Ahmed M. Zheoat ◽  
Samya Alenezi ◽  
Ehab Kotb Elmahallawy ◽  
Marzuq A. Ungogo ◽  
Ali H. Alghamdi ◽  
...  

Trypanosomiasis and leishmaniasis are a group of neglected parasitic diseases caused by several species of parasites belonging to the family Trypansomatida. The present study investigated the antitrypanosomal and antileishmanial activity of chalcones and flavanones from Polygonum salicifolium, which grows in the wetlands of Iraq. The phytochemical evaluation of the plant yielded two chalcones, 2′,4′-dimethoxy-6′-hydroxychalcone and 2′,5′-dimethoxy-4′,6′-dihydroxychalcone, and two flavanones, 5,7-dimethoxyflavanone and 5,8-dimethoxy-7-hydroxyflavanone. The chalcones showed a good antitrypanosomal and antileishmanial activity while the flavanones were inactive. The EC50 values for 2′,4′-dimethoxy-6′-hydroxychalcone against Trypanosoma brucei brucei (0.5 μg/mL), T. congolense (2.5 μg/mL), and Leishmania mexicana (5.2 μg/mL) indicated it was the most active of the compounds. None of the compounds displayed any toxicity against a human cell line, even at 100 µg/mL, or cross-resistance with first line clinical trypanocides, such as diamidines and melaminophenyl arsenicals. Taken together, our study provides significant data in relation to the activity of chalcones and flavanones from P. salicifolium against both parasites in vitro. Further future research is suggested in order to investigate the mode of action of the extracted chalcones against the parasites.


2000 ◽  
Vol 44 (7) ◽  
pp. 1825-1831 ◽  
Author(s):  
Peter S. Margolis ◽  
Corinne J. Hackbarth ◽  
Dennis C. Young ◽  
Wen Wang ◽  
Dawn Chen ◽  
...  

ABSTRACT Peptide deformylase, a bacterial enzyme, represents a novel target for antibiotic discovery. Two deformylase homologs, defA and defB, were identified inStaphylococcus aureus. The defA homolog, located upstream of the transformylase gene, was identified by genomic analysis and was cloned from chromosomal DNA by PCR. A distinct homolog, defB, was cloned from an S. aureus genomic library by complementation of the arabinose-dependent phenotype of a P BAD -def Escherichia coli strain grown under arabinose-limiting conditions. Overexpression in E. coli of defB, but not defA, correlated to increased deformylase activity and decreased susceptibility to actinonin, a deformylase-specific inhibitor. ThedefB gene could not be disrupted in wild-type S. aureus, suggesting that this gene, which encodes a functional deformylase, is essential. In contrast, thedefA gene could be inactivated; the function of this gene is unknown. Actinonin-resistant mutants grew slowly in vitro and did not show cross-resistance to other classes of antibiotics. When compared to the parent, an actinonin-resistant strain produced an attenuated infection in a murine abscess model, indicating that this strain also has a growth disadvantage in vivo. Sequence analysis of the actinonin-resistant mutants revealed that each harbors a loss-of-function mutation in the fmt gene. Susceptibility to actinonin was restored when the wild-type fmt gene was introduced into these mutant strains. An S. aureusΔfmt strain was also resistant to actinonin, suggesting that a functional deformylase activity is not required in a strain that lacks formyltransferase activity. Accordingly, thedefB gene could be disrupted in an fmt mutant.


Author(s):  
V. A. Chavan ◽  
S. G. Borkar ◽  
Nivedita A Kadam

Evolution of fungicide resistance in plant pathogens and cross resistance to other fungicides in such pathogens is one of major concerns in sustainable plant disease management. Frequent and unwarranted use of fungicides to control plant diseases not only pollute the earth soil and environment, but also causes the development of fungicide resistance in the plant pathogens, which makes it difficult to manage the plant disease. In India, particularly in western Maharashtra, Alternaria leaf blight pathogen of tomato developed resistance and cross resistance to various fungicides. How these fungicide resistant isolates grow in the different fungicidal environment is reported in the present investigation. Eight different fungicide resistant isolates of Alternaria solani responsible for causing leaf blight in tomato crop were tested for their growth potential, under in vitro condition, on the potato-dextrose-agar(PDA) growth media amended with different fungicides viz. Dithane M-45, Blitox, Kavach, Ridomil, Nativo, Bavistin, Captaf and Score. Different fungicide resistant isolates showed different pattern of growth i.e. complete inhibition of growth, reduced growth or enhancement of growth on different fungicide amended PDA media. The growth of Dithane M-45 resistant isolate was enhanced by fungicide Kavach and Bavistin while reduced by fungicide Blitox. The growth of this fungicide resistant isolate was completely inhibited by fungicide Ridomil, Nativo, Captaf and Score. The maximum enhancement of growth was for Nativo resistant isolate to Bavistin amended PDA media. Bavistin resistant isolate had decreased growth on all fungicides amended PDA media. The minimum reduction in growth was recorded for Kavach resistant isolate on Dithane M-45 fungicide amended PDA media. The growth rate (cm/day) of these fungicide resistant isolates was maximum at 220C temperature as compared to 25 and 300C temperature on the routine PDA growth medium. Captaf resistant isolate produced more growth followed by Nativo, Dithane M-45 and score resistant isolate. The minimum growth was observed for Blitox resistant isolate. As the temperature increases, the growth rate decreased. The growth of fungicide resistant isolates was favored by neutral pH of 7.0 and decreased toward the acidic and alkaline condition. Captaf resistant isolate produced more growth followed by Nativo and score resistant isolates. The minimum growth was produced by Blitox resistant isolate. More growth of fungicide resistant Alternaria isolate means production of more inoculum for disease initiation and spread which is favored at 22 °C temperature and further indicate which fungicide should be used to restrict/manage the growth of particular Alternaria fungicide resistant isolate.


mSphere ◽  
2018 ◽  
Vol 3 (6) ◽  
Author(s):  
Csaba Papp ◽  
Katica Kocsis ◽  
Renáta Tóth ◽  
László Bodai ◽  
Jesse R. Willis ◽  
...  

ABSTRACT Candida species are a major cause of life-threatening bloodstream infections worldwide. Although Candida albicans is responsible for the vast majority of infections, the clinical relevance of other Candida species has also emerged over the last twenty years. This shift might be due in part to changes in clinical guidelines, as echinocandins became the first line of therapeutics for the treatment. Candida parapsilosis is an emerging non-albicans Candida species that exhibits lower susceptibility levels to these drugs. Candida species frequently display resistance to echinocandins, and the mechanism for this is well-known in C. albicans and Candida glabrata, where it is mediated by amino acid substitutions at defined locations of the β-1,3-glucan synthase, Fks1p. In C. parapsilosis isolates, Fks1p harbors an intrinsic amino acid change at position 660 of the hot spot 1 (HS1) region, which is thought to be responsible for the high MIC values. Less is known about acquired substitutions in this species. In this study, we used directed evolution experiments to generate C. parapsilosis strains with acquired resistance to caspofungin, anidulafungin, and micafungin. We showed that cross-resistance was dependent on the type of echinocandin used to generate the evolved strains. During their characterization, all mutant strains showed attenuated virulence in vivo and also displayed alterations in the exposure of inner cell wall components. The evolved strains harbored 251 amino acid changes, including three in the HS1, HS2, and HS3 regions of Fks1p. Altogether, our results demonstrate a direct connection between acquired antifungal resistance and virulence of C. parapsilosis. IMPORTANCE Candida parapsilosis is an opportunistic fungal pathogen with the ability to cause infections in immunocompromised patients. Echinocandins are the currently recommended first line of treatment for all Candida species. Resistance of Candida albicans to this drug type is well characterized. C. parapsilosis strains have the lowest in vitro susceptibility to echinocandins; however, patients with such infections typically respond well to echinocandin therapy. There is little knowledge of acquired resistance in C. parapsilosis and its consequences on other characteristics such as virulence properties. In this study, we aimed to dissect how acquired echinocandin resistance influences the pathogenicity of C. parapsilosis and to develop explanations for why echinocandins are clinically effective in the setting of acquired resistance.


Blood ◽  
2013 ◽  
Vol 122 (21) ◽  
pp. 3835-3835 ◽  
Author(s):  
Magdalena Klanova ◽  
Lucie Lorkova ◽  
Ondrej Vit ◽  
Bokang Maswabi ◽  
Jan Molinsky ◽  
...  

Abstract Mantle cell lymphoma (MCL) is an aggressive type of B-cell non-Hodgkin lymphoma associated with poor prognosis. In recent years several studies brought evidence that implementation of high-dose cytarabine (ara-C) into induction therapy, e.g. by sequential chemotherapy by CHOP and DHAP regimens, induced higher response rate and prolonged progression-free survival compared to R-CHOP-only. Based on these results, implementation of ara-C into induction therapy became standard of care for all newly diagnosed younger MCL patients. Despite considerable improvement, however, many MCL patients relapse even after ara-C-based first-line regimen. There is no second-line standard-of-care for relapsed/refractory MCL. Currently available treatment approaches include fludarabine, gemcitabine, cisplatin, temsirolimus, bortezomib, bendamustine and many investigational agents, e.g. ibrutinib. By long-term co-culture of 5 cytarabine-sensitive MCL cell lines (Jeko-1, Mino, Rec-1, Hbl-2 and Granta-519, designated as CTRL cell lines) with increasing doses of ara-C (up to 50uM) we derived 5 respective ara-C-resistant (R) MCL subclones. Gene expression analyses of R subclones compared to CTRL cell lines by IlluminaHumanRef-12 BeadChips revealed that the only deregulated (namely downregulated) gene accross all 5 datasets was deoxycytidine-kinase (DCK). Marked downregulation of DCK was confirmed by western blotting. In vitro proliferation assay by WST-8 revealed cross-resistance of R subclones to all tested nucleoside analogs (namely gemcitabine, fludarabine and cladribine; 20-1000x compared to sensitivity of respective CTRL cell lines). Importantly, in vitro sensitivity of R subclones to the other tested anti-tumor agents (i.e. other than antinucleotides) including bortezomib, bendamustine, temsirolimus, cisplatin, etoposide, doxorubicin, ibrutinib, ABT-737, olaparib, roscovitine, homoharringtonine, vorinostat and TRAIL was not significantly changed compared to CTRL cell lines. Similarly, R subclones retained in vitro sensitivity to anti-CD20 monoclonal antibodies rituximab and ofatumumab as determined by standard 51Cr release assays. Experimental therapy of Jeko-1 and Mino-xenografted mice (immunodeficient NSG mice, each cohort comprising 8 animals) with single-agent fludarabine, gemcitabine, cisplatin, temsirolimus, bendamustine and rituximab confirmed the anticipated loss of anti-tumor activity (as measured by overall survival of experimental animals) of the nucleoside analogs in mice transplanted with R subclones compared to mice transplanted with CTRL cell lines. Anti-tumor activity of cisplatin, temsirolimus, bendamustine and rituximab remained comparable between experimental therapy of R subclone and CTRL cell line xenografts. In conclusion our data show that acquired resistance of MCL cells to ara-C is associated with marked downregulation of mRNA and protein expression of DCK, enzyme of the nucleotide salvage pathway responsible for phosphorylation (=activation) of most nucleoside analogs used in anti-cancer therapy. Indeed, all R subclones (compared to CTRL cell lines) were cross-resistant to fludarabine, gemcitabine and cladribine, but remained sensitive to other classes of anti-lymphoma agents, including genotoxic drugs and targeted agents. Despite the fact that these preclinical data need definite confirmation on primary patient samples, the results do suggest that nucleoside analogs should not be used for the therapy of MCL patients, who relaps after ara-C-based first-line regimen. Financial Support: IGA-MZ: NT13201-4/2012, GA-UK 446211, UNCE 204021, PRVOUK-27/LF1/1, PRVOUK P24/LF1/3, SVV-2013-266509 Disclosures: No relevant conflicts of interest to declare.


2013 ◽  
Vol 57 (6) ◽  
pp. 2712-2718 ◽  
Author(s):  
D. Rajotte ◽  
S. Tremblay ◽  
A. Pelletier ◽  
P. Salois ◽  
L. Bourgon ◽  
...  

ABSTRACTSeveral groups have recently reported on the identification of nucleotide-competing reverse transcriptase inhibitors (NcRTIs), a new class of RT inhibitors. NcRTIs reversibly inhibit binding of the incoming nucleotide to the RT active site but do not act as chain terminators, unlike the nucleos(t)ide reverse transcriptase inhibitor (NRTI) class. We identified a novel benzo[4,5]furo[3,2,d]pyrimidin-2-one NcRTI chemical series. Structure-activity relationship evaluation of this series with both RT and viral replication assays led to the identification of compound A, a new NcRTI. Compound A inhibited HIV-1 RT in a primer extension assay (50% inhibitory concentration, 2.6 nM) but had no measurable activity against human DNA polymerase γ at 10 μM. It potently inhibited HIV-1 replicationin vitro(50% effective concentration, 1.5 nM). The antiviral potency of compound A was unaffected by the presence of nonnucleotide RT inhibitor (NNRTI) mutations tested (L100I, K103N/Y181C, V106A, or Y188L). Notably, viruses encoding K65R were hypersusceptible to inhibition by compound A. Compound A also retained full activity against viruses encoding M184V.In vitroselection for resistant virus to compound A led to the selection of a single substitution within RT: W153L. A recombinant virus encoding the RT W153L was highly resistant to compound A (fold change, 160). W153 is a highly conserved residue in HIV RT and has not been previously associated with drug resistance. In summary, a novel NcRTI series with optimized antiviral activity, minimal cross-resistance to existing RT inhibitor classes, and a distinct resistance profile has been discovered. These results further establish NcRTIs as an emerging class of antiretroviral agents.


2021 ◽  
Author(s):  
Fernando Carazo ◽  
Edurne San Jose Eneriz ◽  
Marian Gimeno ◽  
Leire Garate ◽  
Estibaliz Miranda ◽  
...  

Recent functional genomic screens -such as CRISPR-Cas9 or RNAi screening- have fostered a new wave of targeted treatments based on the concept of synthetic lethality. These approaches identified LEthal Dependencies (LEDs) by estimating the effect of genetic events on cell viability. The multiple-hypothesis problem related to a large number of gene knockouts limits the statistical power of these studies. Here, we show that predictions of LEDs from functional screens can be dramatically improved by incorporating the <HUb effect in Genetic Essentiality> (HUGE) of gene alterations. We analyze three recent genome-wide loss-of-function screens -Project Score, CERES score, and DEMETER score- identifying LEDs with 75 times larger statistical power than using state-of-the-art methods. HUGE shows an increased enrichment in a recent harmonized knowledgebase of clinical interpretations of somatic genomic variants in cancer (with an AUROC up to 0.87). Our approach is effective even in tumors with large genetic heterogeneity such as acute myeloid leukemia, where we identified LEDs not recalled by previous pipelines, including FLT3-mutant genotypes sensitive to FLT3 inhibitors. Interestingly, in-vitro validations confirm lethal dependencies of either NRAS or PTPN11 depending on the NRAS mutational status. HUGE will hopefully help discover novel genetic dependencies amenable for precision-targeted therapies in cancer.


1997 ◽  
Vol 41 (7) ◽  
pp. 1504-1507 ◽  
Author(s):  
K L Oakley ◽  
G Morrissey ◽  
D W Denning

SCH-56592 (SCH) is a novel triazole antifungal agent with excellent in vitro activity against Aspergillus. We compared three doses (5, 10, and 25 mg/kg of body weight) of SCH with itraconazole (ITZ; 25 mg/kg) and amphotericin B (AB; 5 mg/kg) in a temporarily neutropenic murine model of disseminated aspergillosis (lungs and kidneys) against one ITZ-susceptible (AF71) and one ITZ-resistant (AF90) isolate of Aspergillus fumigatus. Treatment started 24 h after infection and lasted for 10 days. Dosing regimens for SCH were once daily for 10 days, those for ITZ were three times daily for 2 days and then twice daily for 3 to 10 days, and those for AB were once daily on days 1, 2, 4, and 7. Both isolates killed 90% of control mice. Kidneys and lungs from survivors were cultured on day 11. Against AF71, all three doses of SCH and ITZ yielded a 90 to 100% survival rate and AB yielded 40% survival (P < or = 0.01 to 0.0001 for all treatment groups compared with the controls). All three doses of SCH were superior to AB in cultures of lung and kidney tissue samples (P < or = 0.01 to 0.0002) and SCH at 25 mg/kg was superior to ITZ in cultures of kidneys (P = 0.01). Against AF90, the highest dose of SCH (25 mg/kg) resulted in a 100% survival rate, compared with 60 and 20% survival rates for the groups treated with SCH at 10 and 5 mg/kg, respectively. Treatment with ITZ yielded no survivors. AB therapy achieved a 50% survival rate. SCH at 25 mg/kg (P < 0.001), SCH at 10 mg/kg (P < or = 0.005), and AB (P < 0.05) were superior to ITZ in cultures of lungs and kidneys. There was a correlation between the MICs of SCH and quantitative organ culture results and between the minimum fungicidal concentration of AB with quantitative organ culture results. SCH appears to be a highly effective anti-Aspergillus compound in this model. There appears to be a degree of cross-resistance between itraconazole and SCH.


2016 ◽  
Vol 60 (8) ◽  
pp. 4590-4599 ◽  
Author(s):  
Deepak Almeida ◽  
Thomas Ioerger ◽  
Sandeep Tyagi ◽  
Si-Yang Li ◽  
Khisimuzi Mdluli ◽  
...  

ABSTRACTThe novel ATP synthase inhibitor bedaquiline recently received accelerated approval for treatment of multidrug-resistant tuberculosis and is currently being studied as a component of novel treatment-shortening regimens for drug-susceptible and multidrug-resistant tuberculosis. In a limited number of bedaquiline-treated patients reported to date, ≥4-fold upward shifts in bedaquiline MIC during treatment have been attributed to non-target-based mutations inRv0678that putatively increase bedaquiline efflux through the MmpS5-MmpL5 pump. These mutations also confer low-level clofazimine resistance, presumably by a similar mechanism. Here, we describe a new non-target-based determinant of low-level bedaquiline and clofazimine cross-resistance inMycobacterium tuberculosis: loss-of-function mutations inpepQ(Rv2535c), which corresponds to a putative Xaa-Pro aminopeptidase.pepQmutants were selected in mice by treatment with clinically relevant doses of bedaquiline, with or without clofazimine, and were shown to have bedaquiline and clofazimine MICs 4 times higher than those for the parental H37Rv strain. Coincubation with efflux inhibitors verapamil and reserpine lowered bedaquiline MICs against both mutant and parent strains to a level below the MIC against H37Rv in the absence of efflux pump inhibitors. However, quantitative PCR (qPCR) revealed no significant differences in expression ofRv0678,mmpS5, ormmpL5between mutant and parent strains. Complementation of apepQmutant with the wild-type gene restored susceptibility, indicating that loss of PepQ function is sufficient for reduced susceptibility bothin vitroand in mice. Although the mechanism by which mutations inpepQconfer bedaquiline and clofazimine cross-resistance remains unclear, these results may have clinical implications and warrant further evaluation of clinical isolates with reduced susceptibility to either drug for mutations in this gene.


Sign in / Sign up

Export Citation Format

Share Document