scholarly journals Human Genetic Variation and Yellow Fever Mortality during 19th Century U.S. Epidemics

mBio ◽  
2014 ◽  
Vol 5 (3) ◽  
Author(s):  
Lauren E. Blake ◽  
Mariano A. Garcia-Blanco

ABSTRACT We calculated the incidence, mortality, and case fatality rates for Caucasians and non-Caucasians during 19th century yellow fever (YF) epidemics in the United States and determined statistical significance for differences in the rates in different populations. We evaluated nongenetic host factors, including socioeconomic, environmental, cultural, demographic, and acquired immunity status that could have influenced these differences. While differences in incidence rates were not significant between Caucasians and non-Caucasians, differences in mortality and case fatality rates were statistically significant for all epidemics tested (P < 0.01). Caucasians diagnosed with YF were 6.8 times more likely to succumb than non-Caucasians with the disease. No other major causes of death during the 19th century demonstrated a similar mortality skew toward Caucasians. Nongenetic host factors were examined and could not explain these large differences. We propose that the remarkably lower case mortality rates for individuals of non-Caucasian ancestry is the result of human genetic variation in loci encoding innate immune mediators. IMPORTANCE Different degrees of severity of yellow fever have been observed across diverse populations, but this study is the first to demonstrate a statistically significant association between ancestry and the outcome of yellow fever (YF). With the global burden of mosquito-borne flaviviral infections, such as YF and dengue, on the rise, identifying and characterizing host factors could prove pivotal in the prevention of epidemics and the development of effective treatments.

2008 ◽  
Vol 36 (3) ◽  
pp. 471-477 ◽  
Author(s):  
Jennifer A. Hamilton

In 2000, researchers from the Human Genome Project (HGP) proclaimed that the initial sequencing of the human genome definitively proved, among other things, that there was no genetic basis for race. The genetic fact that most humans were 99.9% the same at the level of their DNA was widely heralded and circulated in the English-speaking press, especially in the United States. This pronouncement seemed proof that long-term antiracist efforts to de-biologize race were legitimized by scientific findings. Yet, despite the seemingly widespread acceptance of the social construction of race, post-HGP genetic science has seen a substantial shift toward the use of race variables in genetic research and, according to a number of prominent scholars, is re-invoking the specter of earlier forms of racial science in some rather discomfiting ways. During the past seven years, the main thrust of human genetic research, especially in the realm of biomedicine, has shifted from a concern with the 99.9% of the shared genome — what is thought to make humans alike — towards an explicit focus on the 0.1% that constitutes human genetic variation. Here I briefly explore some of the potential implications of the conceptualization and practice of early 21st century genetic variation research, especially as it relates to questions of race.


2021 ◽  
Author(s):  
Zhijuan Song ◽  
Xiaocan Jia ◽  
Junzhe Bao ◽  
Yongli Yang ◽  
Huili Zhu ◽  
...  

Abstract Introduction: About 8% of Americans get influenza during an average season from the Centers for Disease Control and Prevention in the United States. It is necessary to strengthen the early warning of influenza and the prediction of public health. Methods In this study, we analyzed the characteristics of Influenza-like Illness (ILI) by Geographic Information System and SARIMA model, respectively. Spatio-temporal cluster analysis detected 23 clusters of ILI during the study period. Results The highest incidence of ILI was mainly concentrated in the states of Louisiana, District of Columbia and Virginia. The Local spatial autocorrelation analysis revealed the High-High cluster was mainly located in Louisiana and Mississippi. This means that if the influenza incidence is high in Louisiana and Mississippi, the neighboring states will also have higher influenza incidence rates. The regression model SARIMA(1, 0, 0)(1, 1, 0)52 with statistical significance was obtained to forecast the ILI incidence of Mississippi. Conclusions The study showed, the ILI incidence will begin to increase in the 45th week 2020 and peak in the 6th week 2021. To conclude, notable epidemiological differences were observed across states, indicating that some states should pay more attention to prevent and control respiratory infectious diseases.


Author(s):  
Shirley Sun

This chapter discusses academic regionalism and racialization of ethnicity in Asia. Geneticists from China, Japan, and South Korea were interviewed about Asianism and the racialization of ethnicity. Four major themes emerged from these interviews: that there is a need to recognize the genetic diversity of the Asian population in clinical trials in the United States, that ethnicity was used as a basis to start the population variation study, that the consortium identified genetic diversity through ethnicity as defined by local geneticists, and that a reaction to Eurocentrism underpins the pride of emerging Asian players in genome science. The overall conclusion resulting from the discussions with the geneticists is that ethnicity is a sociopolitical construct rather than biological.


2020 ◽  
Vol 9 (1) ◽  
pp. 275 ◽  
Author(s):  
Shio-Shin Jean ◽  
Yin-Chun Chang ◽  
Wei-Cheng Lin ◽  
Wen-Sen Lee ◽  
Po-Ren Hsueh ◽  
...  

Septicaemia likely results in high case-fatality rates in the present multidrug-resistant (MDR) era. Amongst them are hospital-acquired pneumonia (HAP) and ventilator-associated pneumonia (VAP), two frequent fatal septicaemic entities amongst hospitalised patients. We reviewed the PubMed database to identify the common organisms implicated in HAP/VAP, to explore the respective risk factors, and to find the appropriate antibiotic choice. Apart from methicillin-resistant Staphylococcus aureus and Pseudomonas aeruginosa, extended-spectrum β-lactamase-producing Enterobacteriaceae spp., MDR or extensively drug-resistant (XDR)-Acinetobacter baumannii complex spp., followed by Stenotrophomonas maltophilia, Chryseobacterium indologenes, and Elizabethkingia meningoseptica are ranked as the top Gram-negative bacteria (GNB) implicated in HAP/VAP. Carbapenem-resistant Enterobacteriaceae notably emerged as an important concern in HAP/VAP. The above-mentioned pathogens have respective risk factors involved in their acquisition. In the present XDR era, tigecycline, colistin, and ceftazidime-avibactam are antibiotics effective against the Klebsiella pneumoniae carbapenemase and oxacillinase producers amongst the Enterobacteriaceae isolates implicated in HAP/VAP. Antibiotic combination regimens are recommended in the treatment of MDR/XDR-P. aeruginosa or A. baumannii complex isolates. Some special patient populations need prolonged courses (>7-day) and/or a combination regimen of antibiotic therapy. Implementation of an antibiotic stewardship policy and the measures recommended by the United States (US) Institute for Healthcare were shown to decrease the incidence rates of HAP/VAP substantially.


2021 ◽  
Vol 2021 ◽  
pp. 1-7
Author(s):  
Rachel Cevigney ◽  
Christopher Leary ◽  
Bernard Gonik

Acute lower respiratory infection (ALRI) due to RSV is a common cause of global infant mortality, with most cases occurring in developing countries. Using data aggregated from priority countries as designated by the United States Agency for International Development’s (USAID) Maternal Child Health and Nutrition (MCHN) program, we created an adjustable algorithmic tool for visualizing the effectiveness of candidate maternal RSV vaccination on infant mortality. Country-specific estimates for disease burden and case fatality rates were computed based on established data. Country-specific RSV-ALRI incidence rates for infants 0-5 months were scaled based on the reported incidence rates for children 0-59 months. Using in-hospital mortality rates and predetermined “inflation factor,” we estimated the mortality of infants aged 0-5 months. Given implementation of a candidate maternal vaccination program, estimated reduction in infant RSV-ALRI incidence and mortality rates were calculated. User input is used to determine the coverage of the program and the efficacy of the vaccine. Using the generated algorithm, the overall reduction in infant mortality varied considerably depending on vaccine efficacy and distribution. Given a potential efficacy of 70% and a maternal distribution rate of 50% in every USAID MCHN priority country, annual RSV-ALRI-related infant mortality is estimated to be reduced by 14,862 cases. The absolute country-specific reduction is dependent on the number of live births; countries with the highest birth rates had the greatest impact on annual mortality reduction. The adjustable algorithm provides a standardized analytical tool in the evaluation of candidate maternal RSV vaccines. Ultimately, it can be used to guide public health initiatives, research funding, and policy implementation concerning the effectiveness of potential maternal RSV vaccination on reducing infant mortality.


2019 ◽  
Vol 11 (1) ◽  
Author(s):  
Razina Khayat ◽  
Najmus Abdullah ◽  
Sudipa Biswas ◽  
Hafeez Rehman ◽  
Kirstin Short

OnjectiveTo study trends and patterns in legionnaires’ disease cases in Houston, Texas, from 2014-2017.IntroductionLegionellosis is a respiratory illness that is mostly (80-90%) caused by the bacterium Legionella pneumophila. It is associated with a mild febrile illness, Pontiac fever, or Legionnaires’ disease (1), a source of severe, community-acquired pneumonia. Legionella bacteria mostly affect elderly persons specifically those with underlying debilitating illnesses and with lowered immune systems. Water is the major natural reservoir for Legionella, and the pathogen is found in many different natural and artificial aquatic environments such as cooling towers or water systems in buildings, including hospitals. An abrupt increase in the incidence of Legionnaires’ has been noted since 2003 throughout the nation. According to CDC, about 6,000 cases of Legionnaires’ disease were reported in the United State in 2015 (1). Incidence rates of Legionnaires for the year 2015 were 1.06 and 1.90 (ref) for Texas and the United States respectively (2). Increased number of reported cases might be due to the fact of an older population, more at risk individuals, aging plumbing infrastructure, and increased testing for Legionnaires’ disease by various hospitals and laboratories.MethodsData were extracted from Houston’s Electronic Disease Surveillance System (HEDSS) from January 1, 2014, to December 07, 2018. Confirmed cases were analyzed to examine the epidemiologic trends across years 2014 to 2018. Demographic characteristics such as age, race, and gender were also analyzed. Incidence rates, case fatality and time lapse from date of diagnosis to date of reporting to the health department were also studied. Data were analyzed using SAS statistical software, version 9.4. Only Houston residents were included in the analysis. To be considered confirmed, a case must be clinically compatible and fulfill at least one of the confirmatory laboratory criteria.ResultsThere were 218 cases of LD reported to the City of Huston from 2014 to 2018. Only 116 cases (53%) were classified as confirmed. Reported cases may have been not confirmed due to the lack of fulfilling the case criteria for the case. Providers may have ordered a non-confirmative test, or the case may not have satisfied the clinical compatibility due to loss to follow-up or for other reasons.Most of the confirmed cases were reported from larger for-profit hospitals (500+beds) in the area. The majority of cases were diagnosed by urinary antigen test (95, 82%). There were four deaths due to legionnaires disease during this period giving a case fatality rate of 3.4%. Death rates were inaccurate, though, and could be higher than reported since cases were not followed up after being reported to the state. From 2014 to 2018, legionnaires’ disease incidence rates increased from 0.71 to 1.36 per 100,000, an average annual increase of 17%.In 2014–2018, the incidence of LD was higher among men compared with women. 67 cases (58%) were male, and 49 (42%) were female. Female cases remained stable throughout the years while male cases increased from 6 to 23, an increase of approximately four folds. The median age was 60 years with a range of 21 to 96 years. LD incidence increased with age; it was highest among residents 65 years and older (42,36%). African Americans had the highest incidence of LD (40, 35%) followed by Hispanics (29, 25%). African Americans cases had more than doubled through years 2014-2018 from 6 to 13. Cases were higher in warmer months specifically in July (14) an August (13).ConclusionsCases were higher in the warmer months and the highest among the elderly, men, and those of African American race. ELR was the prime source of initial case reporting to the health department. The number of legionnaire’s cases observed were increasing with each passing year. The ratio of confirmed cases to those reported were only 53% thus raising awareness and appropriate education to the investigators and providers are highly advised. It is critical to the control of LD that enhanced surveillance is maintained at a high level. Consequently, more consideration should be given for the more widespread use of Legionnaires confirming test when a patient presents with pneumonia.Hospitals and other healthcare facilities often have large, complex water systems, making them potentially high-risk settings for transmission of legionellosis to vulnerable patients or residents. We recommend all healthcare facilities have a water management program to control Legionella.References1. Centers for Disease Control and Prevention. (2018). Infection Control Assessment Tools. Retrieved October 5, 2018, from https://www.cdc.gov/legionella/2. Texas Health and Human Services. (2018). Legionellosis. Retrieved October,5, 2018, from https://www.dshs.texas.gov/idcu/disease/legionnaires/


Blood ◽  
2010 ◽  
Vol 116 (21) ◽  
pp. 873-873
Author(s):  
Julie A Ross ◽  
Kimberly J Johnson ◽  
James R Cerhan ◽  
Cindy K Blair ◽  
John T Soler ◽  
...  

Abstract Abstract 873 Each year in the United States, approximately 45,000 individuals are newly diagnosed with leukemia and 22,000 will die of the disease. Due to this poor survival, leukemia ranks fifth in person years of life lost among specific cancers. Little is known about causes, although exposure to solvents, radiation, pesticides and, to a modest extent, cigarette smoke has been implicated for some subtypes. The last comprehensive report of leukemia trends covered the period 1973–1998 [Xie Y et al, Cancer 2003]. Evaluation of recent leukemia incidence trends could provide important new etiologic insights. Using Surveillance, Epidemiology and End Results (SEER) Program data, we analyzed leukemia incidence trends in U.S. adults (≥ 20 years of age) by age, leukemia subtype (acute myeloid (AML), acute lymphoid (ALL), chronic myeloid (CML), chronic lymphoid (CLL)) sex, race, and ethnicity for the period 1987–2007. Frequencies, age-adjusted incidence rates (IR, per million), and trends were calculated along with annual percent change (APC) and corresponding 95% confidence intervals (CI). Joinpoint analyses were used to detect any significant directional changes in IRs over the period. Of 43,970 newly diagnosed cases identified, IRs increased with age and were consistently higher in males than females for all four subtypes. The highest IRs occurred for CLL (54.4), followed by AML (38.3), CML (20.6) and ALL (7.0). With regard to trends, IRs for CLL (APC -0.5; CI: -0.9, -0.1) and CML (APC -1.2; CI: -1.6, -0.8) declined over the time period; declines were observed in males and females, and by race and ethnicity. Male(M):Female(F) IR ratios remained relatively constant at approximately 2.0 and 1.7, respectively. For ALL, IRs decreased in males (APC -0.9; CI: -1.9, 0.2) but slightly increased in females (APC 0.4; CI: -1.0, 1.7), which was most notable in Hispanics (APC 4.0; CI: 1.2, 6.8). In contrast to CML and CLL, the overall M:F rate ratio for ALL decreased, although it did not reach statistical significance (p=0.08). For AML, IRs increased significantly for males (APC 1.0; CI: 0.3,1.6) and females (APC 1.7; CI: 0.7, 2.7) from 1987–2000 and 1987–2001, respectively. However, since then, AML IRs for males have been significantly decreasing by 4.2% per year (CI: -6.4, -2.1), while IRs for females have been decreasing by 1.6% per year (CI: -4.1, 0.9). Across the entire time period 1987–2007, there was a statistically significant negative trend (p=0.002) in the M:F IR ratio for AML. Decreasing IRs across many leukemias since 1987 are unlikely to reflect changes in screening or diagnostic coding practices. Instead, these observations may reflect temporal changes in etiologically relevant environmental exposures. Of note, the prevalence of cigarette smoking in the population has decreased and occupational safety practices (e.g., reducing solvent/radiation/pesticide exposure) have improved over the last several decades, which could contribute to the gradual decreases in some IRs observed. In contrast, the rapid and significant decrease noted for AML since 2000, especially following a significant increase, was striking and deserved additional scrutiny. We further consulted with our cancer registry colleagues to determine whether the introduction of myelodysplastic syndrome (MDS) as a new malignancy in SEER in 2001 could be influencing recent AML trends given the (apparently) coincidental overlap in time periods. Of note, approximately one third of MDS patients subsequently develop AML. We learned that AML following an MDS diagnosis from 2001–2009 was not reportable to SEER and therefore not counted. We are not aware that this has been documented in the literature. However, beginning for 2010 diagnoses, SEER changed this practice such that AML following MDS will be captured as a second malignancy. Based on these changes in AML surveillance, it will especially be important to monitor future trends for this malignancy. Overall, this study demonstrates the value of in-depth analyses of SEER cancer IRs and trends; analyses may reveal patterns of clinical and/or etiological importance, or, in the instance of AML, unpublished coding rule changes. Disclosures: No relevant conflicts of interest to declare.


2020 ◽  
Vol 38 (15_suppl) ◽  
pp. 10077-10077
Author(s):  
Hoa Van Le ◽  
CHI HUU HONG LE ◽  
Phuong HUU UYEN LE ◽  
CHI THI LE Truong

10077 Background: Cutaneous skin cancer is among the most common malignancies in US. While Surveillance, Epidemiology and End Results (SEER) data are vital to estimate its incidence, delays and under-reporting remained major limitations. Surveillance is hindered due to exclusion from states’ reportable diseases and possible outpatient diagnoses’ omission from registries. Thus, exact incidence has not been known. This study determined skin cancer incidence and trends from 1999 to 2016 in a nationally representative sample. Methods: New melanoma, non-melanoma and other skin cancer cases among adults aged ≥20 years were identified in the National Health and Nutrition Examination Survey (NHANES), 1999-2016. Crude and age-adjusted incidences and 95% CIs were estimated by survey year cohorts (1999-2008 and 2009-2016) based on the 2000 US standard population. Sex and age-stratified longitudinal trends were examined in age and sex-adjusted regression models. Statistical analyses accounted for complex survey design with examination sample weight and adjusted for nonresponse. Sensitivity analyses included unadjusted, sex- and age- adjusted modeling. Statistical significance was determined by 2-sided p-value of .05. Results: Among 47,172 adults and 21,192 non-Hispanic whites from 1999-2016, the overall age-standardized incidences of skin cancer per 100000 persons were 390.9 (95% CI: 312-469.7) and 519 (95% CI: 413.8-624.3), respectively. The median age at first diagnosis was 72.2 (mean = 69.8, IQR = 57.5-79.5 years). The incidence was higher in men than women (474.7 vs 313.8 per 100000 persons, p< .001) and increased with older age ( p< .001). Between 1999-2008 and 2009-2016, the incidence was significantly higher in those older than 70, 75 and 80 ( p ≤.01). Rising incidence was also observed in overall population, women, and by approximately 90% among those older than 70. Sensitivity analyses showed similar trends. Conclusions: Our incidence rates for skin cancer were high, particularly in the elderly. From 1999 to 2016, the incidence increased in women and those 70 and older, a concerning observation given the aging population. As understanding susceptible groups has public health implications, our study provided an updated depiction of skin cancer incidence and trends in US. [Table: see text]


2020 ◽  
Author(s):  
Manfred S Green ◽  
Naama Schwartz ◽  
Dorit Nitzan ◽  
Victoria Peer

AbstractBackgroundEarly in the COVID-19 pandemic, it was noted that males seemed to be more affected than females. We examined the magnitude and consistency of the sex differences in age-specific case-fatality rates (CFRs) in six countries.MethodsData on the cases and deaths from COVID-19, by sex and age group, were extracted from the published reports from Denmark, England, Israel, Italy, Spain, and the United States. Age-specific CFRs were computed for males and females separately. The ratio of the male to female CFRs were computed and meta-analytic methods were used to obtained pooled estimates of the male to female ratio of the CFRs over the six countries, for seven age-groups.FindingsThe CFRs were consistently higher in males at all ages. The differences were greater in the younger age groups. The pooled M:F CFR ratios were 2.53, 2.92, 2.57, 1.83, 1.57, 1.58 and 1.48 for ages 0-39, 40-49, 50-59, 60-69, 70-79, 80-89 and 90+. There was remarkable consistency between countries in the magnitude of the M:F CFRs, in each age group. In meta-regression, age group explained almost all the heterogeneity in the CFR ratios.ConclusionsThe sex differences in the CFRs are intriguing and are compatible with the male dominance in the incidence rates of many infectious diseases. For COVID-19, factors such as sex differences in the prevalence of underlying diseases may play a part in the CFR differences. However, the greater severity of the disease in males, particularly at younger ages, may be part of the disease mechanism and should be explored further.FundingNo funding was provided for this study. The authors declare no conflict of interests


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