scholarly journals Full genomic characterization of a porcine rotavirus strain detected in an asymptomatic piglet in Accra, Ghana

2020 ◽  
Vol 16 (1) ◽  
Author(s):  
Samuel C. B. Stubbs ◽  
Osbourne Quaye ◽  
Maame Ekua Acquah ◽  
Samuel Mawuli Adadey ◽  
Iain R. L. Kean ◽  
...  
Keyword(s):  
Developing World ◽  
Low Frequency ◽  
Virus Antigen ◽  
Open Reading Frames ◽  
Farm Animals ◽  
Metagenomic Sequencing ◽  
Rotavirus A ◽  
Clinically Normal ◽  
Source Of Infection ◽  
Genotype Constellation

Abstract Background The introduction of rotavirus A vaccination across the developing world has not proved to be as efficacious as first hoped. One cause of vaccine failure may be infection by zoonotic rotaviruses that are very variable antigenically from the vaccine strain. However, there is a lack of genomic information about the circulating rotavirus A strains in farm animals in the developing world that may be a source of infection for humans. We therefore screened farms close to Accra, Ghana for animals sub-clinically infected with rotavirus A and then sequenced the virus found in one of these samples. Results 6.1% of clinically normal cows and pigs tested were found to be Rotavirus A virus antigen positive in the faeces. A subset of these (33.3%) were also positive for virus RNA. The most consistently positive pig sample was taken forward for metagenomic sequencing. This gave full sequence for all open reading frames except segment 5 (NSP1), which is missing a single base at the 5′ end. The virus infecting this pig had genome constellation G5-P[7]-I5-R1-C1-M1-A8-N1-T7-E1-H1, a known porcine genotype constellation. Conclusions Farm animals carry rotavirus A infection sub-clinically at low frequency. Although the rotavirus A genotype discovered here has a pig-like genome constellation, a number of the segments most closely resembled those isolated from humans in suspected cases of zoonotic transmission. Therefore, such viruses may be a source of variable gene segments for re-assortment with other viruses to cause vaccine breakdown. It is recommended that further human and pig strains are characterized in West Africa, to better understand this dynamic.

scholarly journals Application of a Polymerase Chain Reaction Assay for Detection of Proliferative Enteritis-Affected Swine Herds

1996 ◽  
Vol 8 (2) ◽  
pp. 181-185 ◽  
Author(s):  
Patricia K. Holyoake ◽  
Gary F. Jones ◽  
Peter R. Davies ◽  
Dennis L. Foss ◽  
Michael P. Murtaugh
Keyword(s):  
Polymerase Chain Reaction ◽  
Chain Reaction ◽  
Pcr Assay ◽  
Nursery Pigs ◽  
Clinically Normal ◽  
Source Of Infection ◽  
History Of ◽  
Polymerase Chain ◽  
Swine Herds ◽  
Age Range

A polymerase chain reaction (PCR) assay was used to confirm the presence of ileal symbiont (IS) intracellularis in 3 swine herds with a history of proliferative enteritis (PE). Two pooled fecal specimens, each comprising 5 individual stool samples, were collected from pen floors to screen for the presence of IS intracellularis and determine the age range of pigs shedding the organism. IS intracellularis was detected in the feces of clinically normal 10–25week-old grower/finisher pigs, indicating that this age range of pigs was the main source of infection for younger nursery pigs. Shedding continued without clinical disease when 10–100 g/ton of tylosin or 10 g/ton of chlortetracycline was added to the feed. PCR testing of pooled fecal samples can be used to identify groups of pigs affected with PE. The results of this study indicate that this PCR assay has the potential to accurately assess the IS intracellularis infection status of swine herds and the association of IS intracellular-is with PE and growth performance.

scholarly journals EPIDEMIOLOGICAL AND EPIZOOTIC ASPECT OF LEPTOSPIROSIS EVOLUTION IN TERNOPIL REGION

2016 ◽  
Author(s):  
N. A. Vasylieva ◽  
Yu. A. Kravchuk
Keyword(s):  
Infectious Diseases ◽  
Disease Incidence ◽  
Human Infection ◽  
Farm Animals ◽  
Natural Conditions ◽  
Natural Reservoir ◽  
Source Of Infection ◽  
Regional Laboratory ◽  
Dark Ground ◽  
Different Sources

<p>Background. Ternopil region is endemic on leptospirosis. Its natural conditions (slightly alkaline or alkaline<br />soils, air temperature, sufficient rainfall) contribute to the existence of major natural reservoir of the pathogen –<br />mouse-like rodents. In the region, different serovariants of leptospira are exuded by rodents and farm<br />animals.<br />Objective. The materials of the Department of Highly Infectious Diseases of Ternopil Regional Laboratory<br />Centre of the State Sanitation and Epidemiological Service of Ukraine, Ternopil Regional Laboratory of Veterinary<br />Medicine, Clinic of Infectious Diseases of TSMU were studied.<br />Leptospiras were detected by dark ground microscopy (DFM) of blood of patients, trapped rodents and examined<br />farm animals.<br />Results. The circulating of pathogens between different sources (rodents, animals) and annual �����������disease incidence<br />evidences that new leptospira serovar are carried onto endemic area mostly by farm animals; humans<br />are infected from them through the environment sometimes in 3-5 years intervals; the further diffusion to the<br />new areas of this pathogen serovars in all kinds of the examined mouse-like rodents is noticed.<br />It is established that farm animals and rodents are competing reservoirs. To predict the future epidemiological<br />situation of leptospirosis among the humans and to improve its diagnosis the constant monitoring of the<br />population, infection and leptospira carriage among mouse-like rodent and farm animals and expanding of the<br />panel of diagnostic leptospira strains including new pathogen variants in animals is necessary.<br />Conclusions. The development of additional reservoirs in animals, with circulating of other pathogen<br />serovars among them, such as mouse-like rodents, which were previously absent in the main natural reservoir,<br />cause the change of etiological structure in human leptospirosis at the endemic areas. The range of human<br />leptospirosis pathogens and its further spreading among all kinds of rodents increased during our research. The<br />results of detection of leptospirosis pathogens among the various contingents which were studied evidence that<br />the farm animals and rodents are competing reservoirs that cause human infection through environment.<br />KEY WORDS: leptospirosis, disease incidence, source of infection, rodents, farm animals.</p>

scholarly journals Reference Human Rotavirus A Genome Sequence from a Previously Vaccinated Child with Diarrhea in Nigeria

2020 ◽  
Vol 9 (5) ◽  
Author(s):  
T. O. C. Faleye ◽  
U. E. George ◽  
C. Simsek ◽  
O. A. Arowolo ◽  
O. M. Adewumi ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Reverse Transcription ◽  
Rapid Test ◽  
Etiologic Agent ◽  
Rt Pcr ◽  
Rotavirus A ◽  
Reverse Transcription Pcr ◽  
Human Rotavirus ◽  
A Genome ◽  
Genotype Constellation

In 2018, a 26-month-old girl, fully vaccinated with Rotarix in 2016, presented with fever, diarrhea, and vomiting. A rapid test showed that her feces contained rotavirus A (RVA). VP7 reverse transcription-PCR (RT-PCR) and Illumina sequencing showed that a G1P[8] strain with a Wa-like genotype constellation was the etiologic agent. This is the first near-complete RVA genome sequence from Nigeria.

scholarly journals Discovery and Prevalence of Divergent RNA Viruses in European Field Voles and Rabbits

Viruses ◽  
2019 ◽  
Vol 12 (1) ◽  
pp. 47 ◽  
Author(s):  
Theocharis Tsoleridis ◽  
Joseph G. Chappell ◽  
Elodie Monchatre-Leroy ◽  
Gérald Umhang ◽  
Mang Shi ◽  
...  
Keyword(s):  
Rna Viruses ◽  
Mammalian Species ◽  
Amino Acid Level ◽  
Metagenomic Sequencing ◽  
The Novel ◽  
Field Vole ◽  
Pcr Screening ◽  
Rotavirus A ◽  
European Roller ◽  
The Uk

The advent of unbiased metagenomic virus discovery has revolutionized studies of virus biodiversity and evolution. Despite this, our knowledge of the virosphere, including in mammalian species, remains limited. We used unbiased metagenomic sequencing to identify RNA viruses in European field voles and rabbits. Accordingly, we identified a number of novel RNA viruses including astrovirus, rotavirus A, picorna-like virus and a narmovirus (paramyxovirus). In addition, we identified a sobemovirus and a novel luteovirus that likely originated from the rabbit diet. These newly discovered viruses were often divergent from those previously described. The novel astrovirus was most closely related to a virus sampled from the rodent-eating European roller bird (Coracias garrulous). PCR screening revealed that the novel narmovirus in the UK field vole had a prevalence of approximately 4%, and shared common ancestry with other rodent narmoviruses sampled globally. Two novel rotavirus A sequences were detected in a UK field vole and a French rabbit, the latter with a prevalence of 5%. Finally, a highly divergent picorna-like virus found in the gut of the French rabbit virus was only ~35% similar to an arilivirus at the amino acid level, suggesting the presence of a novel viral genus within the Picornaviridae.

scholarly journals Brucellae through the food chain : the role of sheep, goats and springbok (Antidorcus marsupialis) as sources of human infections in Namibia

2011 ◽  
Vol 82 (4) ◽  
Author(s):  
K. Magwedere ◽  
A. Bishi ◽  
G. Tjipura-Zaire ◽  
G. Eberle ◽  
Y. Hemberger ◽  
...  
Keyword(s):  
Goat Milk ◽  
Raw Milk ◽  
Cross Reactivity ◽  
Control Programme ◽  
Enzyme Linked Immunosorbent Assay ◽  
Human Brucellosis ◽  
Serum Samples ◽  
Clinically Normal ◽  
Source Of Infection ◽  
Human Infections

A confirmed case of human brucellosis motivated an investigation into the potential source of infection in Namibia. Since domestic animals are principal sources of Brucella infection in humans, 1692 serum samples were screened from sheep, goats and cattle from 4 presumably at-risk farms and 900 springbok (Antidorcas marsupialis) serum samples from 29 mixed farming units for Brucella antibodies by the Rose-Bengal test (RBT) and positive cases confirmed by complement fixation test (CFT). To assess the prevalence of human brucellosis, 137 abattoir employees were tested for Brucella antibodies using the standard tube agglutination test (STAT) and by enzyme linked immunosorbent assay (ELISA). Cattle and sheep from all 4 farms were negative by RBT and CFT but 2 of the 4 farms (Ba and C) had 26/42 and 12/285 seropositive goats, respectively. Post mortem examination of seropositive goats revealed no gross pathological lesions typical of brucellosis except enlarged mesenteric and iliac lymph nodes seen in a single buck. Culture for brucellae from organs of seropositive animals was negative. None of the wildlife sera tested positive by either RBT or CFT. Interviews revealed that besides the case that prompted the investigation, a family and another person from other farms with confirmed brucellosis shared a common history of consumption of unpasteurised goat milk, home-made goat cheese and coffee with raw milk and prior contact with goats, suggesting goats as the likely source of infection. All 137 abattoir employees tested negative by STAT, but 3 were positive by ELISA. The 3 abattoir workers were clinically normal and lacked historical connections with clinical cases. Although goats are often associated with B. melitensis, these studies could not explicitly implicate this species owing to cross-reactivity with B. abortus, which can also infect goats. Nevertheless, these data reinforce the need for a better National Control Programme for brucellosis in Namibia.

scholarly journals Electrodiagnostic Examination of the Tibial Nerve in Clinically Normal Ferrets

2010 ◽  
Vol 2010 ◽  
pp. 1-5 ◽  
Author(s):  
Ezio Bianchi ◽  
Daniela Callegari ◽  
Manuela Ravera ◽  
Maurizio Dondi
Keyword(s):  
Action Potentials ◽  
Motor Nerve ◽  
Neuromuscular Disorders ◽  
Low Frequency ◽  
Mustela Putorius ◽  
Repetitive Nerve Stimulation ◽  
Motor Nerve Conduction ◽  
Clinically Normal ◽  
Minimum Latency ◽  
Muscular Action

Tibial nerves of 10 normal domestic ferrets (Mustela putorius furo) were evaluated by means of electrodiagnostic tests: motor nerve conduction studies (MNCSs), supramaximal repetitive nerve stimulation (SRNS),Fwaves, and cord dorsum potentials (CDPs). Values of conduction velocity, proximal and distal compound muscular action potentials, and amplitudes of MNCS were, respectively, 63.25 7.56 m/sec, 10.79 2.75 mV, and 13.02 3.41 mV. Mean decrements in amplitude and area of compound muscular action potentials of wave 9 with low frequency SRNS were 0.3 3.83% and 0.1 3.51%. The minimum latency of theFwaves and theFratio were, respectively, 8.49 0.65 ms and 1.92 0.17. Onset latency of CDP was 1.99 0.03 ms. These tests may help in diagnosing neuromuscular disorders and in better characterizing the hindlimb paresis reported in many ferrets with systemic illnesses.

scholarly journals Analysis of the Results of Monitoring Arbovirus Infections in the Volgograd Region in 2019

2021 ◽  
Vol 20 (1) ◽  
pp. 51-59
Author(s):  
A. O. Negodenko ◽  
E. V. Molchanova ◽  
D. R. Prilepskaya ◽  
P. Sh. Konovalov ◽  
O. A. Pavlyukova ◽  
...  
Keyword(s):  
West Nile Virus ◽  
Sindbis Virus ◽  
Hemorrhagic Fever ◽  
Virus Antigen ◽  
Farm Animals ◽  
West Nile ◽  
Hemorrhagic Fever Virus ◽  
Blood Sucking ◽  
Volgograd Region ◽  
California Serogroup

Relevance. Natural and climatic conditions, a variety of species composition of arthropods and vertebrates determine the possibility of circulation of arboviruses in the Volgograd region. The existence of natural foci of some arbovirus infections and the possibility of the formation of others suggests the need for annual monitoring of the causative agents of arbovirus diseases. Аim. Evaluation of the results of monitoring of arbovirus infections in the Volgograd region in 2019.Materials and methods: 806 blood serum samples from donors, 44 blood serum samples from febrile sick people, 300 blood serum samples from horses and 94 pools of blood-sucking mosquitoes were examined by immunofernal analysis. Result of the study of serum samples from donors in the Volgograd region, in 140 (17.4%) of 806 were found to have antibodies to the pathogen of West Nile fever (in 35 (4.3%) – IgM, in 105 (13.0%) – IgG), in 7 (2.2%) of 319 – to the Crimean hemorrhagic fever virus (in 4 (1.3%) – IgM, in 3 (0.9%) –IgG), and in 7 (2.9%) of 240 – IgG to the viruses of the California serogroup. Specific antibodies against viruses of Sindbis, Batai and Uukuniemi in the samples was not detected. The largest number of positive samples with the presence of IgG and IgM to the West Nile virus was found among residents of Volgograd (61 out of 240, 25.4%) and Volzhsky (25 out of 100, 25, 0%). Among 44 blood serums of febrile patients, 1 sample (2.3%) was found to contain an antigen of the Sindbis virus, and 2 samples (4.5%) – antigens California serogroup viruses. Specific immunoglobulins against West Nile virus were detected in 84 (28%) of 300 blood serums of farm animals (horses). In the study of 94 samples of field material (blood-sucking mosquitoes), West Nile virus antigen was detected in 14 (14.9%), Sindbis virus – in one sample (1.0%), Batai virus – in four samples (4.2%). Conclusions: the obtained results, along with the circulation of West Nile virus and Crimean hemorrhagic fever virus virus in the Volgograd region, indicate the presence of Sindbis, Batai and California serogroup viruses and necessitate further study of their role in the infectious pathology of the population.

scholarly journals ICTV Virus Taxonomy Profile: Redondoviridae

2020 ◽  
Author(s):  
Arwa Abbas ◽  
Louis J. Taylor ◽  
Ronald G. Collman ◽  
Frederic D. Bushman ◽  
Keyword(s):  
Critical Illness ◽  
Causative Agent ◽  
Human Subjects ◽  
International Committee ◽  
Open Reading Frames ◽  
Metagenomic Sequencing ◽  
Virus Taxonomy ◽  
Single Stranded Dna ◽  
The Family ◽  
Reading Frames

Viruses in the family Redondoviridae have a circular genome of 3.0 kb with three open reading frames. The packaged genome is inferred to be single-stranded DNA by analogy to related viruses. Redondoviruses were discovered through metagenomic sequencing methods in samples from human subjects and are inferred to replicate in humans. Evidence of redondovirus infection is associated with periodontitis and critical illness, but redondoviruses have not been shown to be the causative agent of any diseases. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the family Redondoviridae, which is available at ictv.global/report/redondoviridae.

scholarly journals The Investigation of Perennial Sunflower Species (Helianthus L.) Mitochondrial Genomes

Genes ◽  
2020 ◽  
Vol 11 (9) ◽  
pp. 982
Author(s):  
Maksim Makarenko ◽  
Alexander Usatov ◽  
Tatiana Tatarinova ◽  
Kirill Azarin ◽  
Alexey Kovalevich ◽  
...  
Keyword(s):  
Low Frequency ◽  
Blind Spot ◽  
Open Reading Frames ◽  
Mitochondrial Genomes ◽  
Perennial Species ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gene Profiles ◽  
Helianthus Species ◽  
Reading Frames

The genus Helianthus is a diverse taxonomic group with approximately 50 species. Most sunflower genomic investigations are devoted to economically valuable species, e.g., H. annuus, while other Helianthus species, especially perennial, are predominantly a blind spot. In the current study, we have assembled the complete mitogenomes of two perennial species: H. grosseserratus (273,543 bp) and H. strumosus (281,055 bp). We analyzed their sequences and gene profiles in comparison to the available complete mitogenomes of H. annuus. Except for sdh4 and trnA-UGC, both perennial sunflower species had the same gene content and almost identical protein-coding sequences when compared with each other and with annual sunflowers (H. annuus). Common mitochondrial open reading frames (ORFs) (orf117, orf139, and orf334) in sunflowers and unique ORFs for H. grosseserratus (orf633) and H. strumosus (orf126, orf184, orf207) were identified. The maintenance of plastid-derived coding sequences in the mitogenomes of both annual and perennial sunflowers and the low frequency of nonsynonymous mutations point at an extremely low variability of mitochondrial DNA (mtDNA) coding sequences in the Helianthus genus.

142 Effect of follicular size on oocyte recovery rate, quality, and in vitro developmental competency following maturation, fertilization, and culturing in Bos indicus cows

2019 ◽  
Vol 31 (1) ◽  
pp. 196
Author(s):  
Z. Sarwar ◽  
M. Saad ◽  
M. Saleem ◽  
A. Riaz ◽  
N. Ahmad
Keyword(s):  
Recovery Rate ◽  
Bos Taurus ◽  
Body Condition Score ◽  
Bos Indicus ◽  
Reproductive Technologies ◽  
Developmental Competence ◽  
Farm Animals ◽  
Clinically Normal ◽  
Follicular Size

Applied reproductive technologies include AI, multiple ovulation and embryo transfer, IVF, cloning, ovum pickup, and zygote intra-fallopian tube transfer in farm animals. Modern commercialized dairy farming is ever more relying on in vitro embryo production for maximal utilisation of superior genetics of female animals. Follicular size influenced the quality of the oocytes and their in vitro developmental competence in Bos taurus cows. However, this information is lacking in Bos indicus cows. Therefore, the objectives of the present study were to determine the effect of follicular size on recovery rate, quality, and in vitro developmental competence of the oocytes in Bos indicus cows. The ovaries (n=508) of 5- to 8-years-old Bos indicus cows, body condition score 2.75±0.25, having mixed parity and clinically normal reproductive tracts, were collected. These follicles on the ovaries were divided into 2 groups based on their size: (1) &lt;6mm diameter and (2) ≥6mm diameter. The data on recovery; quality; maturation; cleavage rates; 4-cell, 8-cell, and 16-cell stages; and morula rate were analysed by Chi-squared test using SPSS version 20 software (IBM Corp., Armonk, NY, USA, 2016) system for windows. Results revealed that oocytes with grade I+II quality (68.4v. 42.1%; P&lt;0.05) were higher, whereas grade III+IV quality (31.6v. 57.5%; P&lt;0.05) were lower, in ≥6mm as compared with &lt;6mm groups, respectively. Moreover, the 4-cell (34.5v. 18.7%), 8-cell (15.4v. 7.7%), 16-cell (8.7v. 2.2%) stages and morula rate (4.5v. 0.3%) were higher (P&lt;0.05) in ≥6mm as compared with &lt;6mm groups, respectively. However, the maturation and cleavage rates did not differ (P&gt;0.05) between both groups. It is concluded that oocytes having follicle size ≥6mm have better quality in terms of morphological grades and in vitro developmental competence in Bos indicus cows. It is implied that for maximum production of embryos through ovum pickup, the most appropriate follicular size for aspiration is ≥6 mm.

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