scholarly journals Salmonid gene expression biomarkers indicative of physiological responses to changes in salinity and temperature, but not dissolved oxygen

2019 ◽  
Vol 222 (13) ◽  
pp. jeb198036 ◽  
Author(s):  
Aimee Lee S. Houde ◽  
Arash Akbarzadeh ◽  
Oliver P. Günther ◽  
Shaorong Li ◽  
David A. Patterson ◽  
...  
2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Mark G. Sterken ◽  
Marijke H. van Wijk ◽  
Elizabeth C. Quamme ◽  
Joost A. G. Riksen ◽  
Lucinda Carnell ◽  
...  

AbstractEthanol-induced transcriptional changes underlie important physiological responses to ethanol that are likely to contribute to the addictive properties of the drug. We examined the transcriptional responses of Caenorhabditis elegans across a timecourse of ethanol exposure, between 30 min and 8 h, to determine what genes and genetic pathways are regulated in response to ethanol in this model. We found that short exposures to ethanol (up to 2 h) induced expression of metabolic enzymes involved in metabolizing ethanol and retinol, while longer exposure (8 h) had much more profound effects on the transcriptome. Several genes that are known to be involved in the physiological response to ethanol, including direct ethanol targets, were regulated at 8 h of exposure. This longer exposure to ethanol also resulted in the regulation of genes involved in cilia function, which is consistent with an important role for the effects of ethanol on cilia in the deleterious effects of chronic ethanol consumption in humans. Finally, we found that food deprivation for an 8-h period induced gene expression changes that were somewhat ameliorated by the presence of ethanol, supporting previous observations that worms can use ethanol as a calorie source.


2006 ◽  
Vol 61 (3) ◽  
pp. 469-489 ◽  
Author(s):  
Xin Deng ◽  
Jonathan Phillips ◽  
Anne Bräutigam ◽  
Peter Engström ◽  
Henrik Johannesson ◽  
...  

2004 ◽  
Vol 72 (3) ◽  
pp. 1580-1586 ◽  
Author(s):  
J. Seshu ◽  
Julie A. Boylan ◽  
Frank C. Gherardini ◽  
Jonathan T. Skare

ABSTRACT The Lyme disease spirochete, Borrelia burgdorferi, encounters many environmental signals as it cycles between the arthropod vector and mammalian hosts, including temperature, pH, and other host factors. To test the possibility that dissolved oxygen modulates gene expression in B. burgdorferi, spirochetes were exposed to differential levels of dissolved oxygen, and distinct alterations were observed at both the transcriptional and translational levels. Specifically NapA, a Dps/Dpr homologue involved in the oxidative stress response in other bacteria, was reduced when B. burgdorferi was grown under oxygen-limiting conditions. In contrast, several immunoreactive proteins were altered when tested with infection-derived sera from different hosts. Specifically, OspC, DbpA, and VlsE were synthesized at greater levels when cells were grown in limiting oxygen, whereas VraA was reduced. The levels of oxygen in the medium did not affect OspA production. Real-time reverse transcription-PCR analysis of RNA isolated from infectious isolates of strains B31 and cN40 indicated that the expression of ospC, dbpA, and vlsE increased while napA expression decreased under dissolved-oxygen-limiting conditions, whereas flaB was not affected. The reverse transcription-PCR results corroborated the immunoblot analyses and indicated that the increase in OspC, DbpA, and VlsE was due to regulation at the transcriptional level of the genes encoding these antigens. These results indicate that dissolved oxygen modulates gene expression in B. burgdorferi and imply that the redox environment may be an additional regulatory cue that spirochetes exploit to adapt to the disparate niches that they occupy in nature.


Author(s):  
Farida Yulianti ◽  
Afifuddin Latif Adiredjo ◽  
Lita Soetopo ◽  
Sumeru Ashari

Background: RGL mandarin is one of the important mandarin citrus varieties in Indonesia. The tolerance of RGL mandarin citrus to water deficit can be induced by the rootstock. This study aimed to characterize the physiological responses and transcriptional gene expression of RGL mandarin citrus grafted onto three rootstock genotypes during the dry and the rainy seasons.Methods: Three-years-old mandarin citrus trees cv. Rimau Gerga Lebong (RGL) grafted onto three citruses (JC, Cit and K) were planted at the experimental field of the ICISFRI. The experiment was conducted with a randomized block design and each scion-rootstock combination contained five replications. All of the physiological and relative gene expression parameters observed were conducted at the last of the dry season (September 2019) and the mid of the rainy season (January 2020). Water deficit was induced by no watering plants during the dry season.Result: The results of physiological responses and relative gene expression analyses showed that RGL-Cit combination had better than RGL-JC combination and RGL-JC combination had better than RGL-K combination. RGL-Cit combination showed less wilt than RGL-JC and RGL-K combinations. The RGL-Cit combination had the highest stomatal density, stomatal aperture, stomatal conductance and photosynthetic rate in the dry season. Different plant combinations showed different gene expressions. RGL-JC and RGL-K combinations were upregulated in almost all the primers related to drought responses tested in the dry season. RGL-Cit combination only upregulated the PIP1, PIP2 and ACS2 and unregulated the others in the dry season. Therefore, citrumelo seems to be a valuable type of rootstock.


PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e7381 ◽  
Author(s):  
Zhenlu Wang ◽  
Yuexin Qu ◽  
Xiaolei Zhuo ◽  
Junyi Li ◽  
Jixing Zou ◽  
...  

Background Litopenaeus vannamei is one of the most important aquaculture shrimps in the world and low temperatures present a serious challenge to its survival, growth, and distribution. Methods To investigate their physiological responses during acute cold-stress, L. vannamei were treated under acute cooling conditions from 28 to 13 °C with a cooling rate of 2.5 °C/2 h and were maintained at 13 °C for 12 h. Plasma metabolite concentrations, histological changes, and relative gene expression related to the unfolded protein response (UPR) pathway and apoptosis in the hepatopancreas and the hemocytes of L. vannamei were investigated. Results The results revealed that the concentrations of triglycerides, total cholesterol, and total protein in plasma reached their peaks at 23 °C, and then decreased to their minimum values at 13 °C for 12 h. The activity of alkaline phosphatase in the plasma decreased to its lowest level while the activity of alanine aminotransferase increased to its highest level at 13 °C for 12 h. The hepatic tubules became necrotic and the basement membranes were ruptured at 13 °C for 12 h. The gene expression related to UPR and apoptosis in the hepatopancreas and hemocytes was significantly altered by the decrease in the temperature. Discussion The results revealed that acute cold-stress caused histological damage in the hepatopancreas of L. vannamei, reducing its immunity. The three UPR pathways were involved in the process of acute cold-stress and the response of activating transcription factor 6 to UPR may be faster and more directthan the IRE1 and PERK pathways.


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