scholarly journals The suitability of a quasi-Newton algorithm for estimating fitness-fatigue models: Sensitivity, troublesome local optima, and implications for future research (An in silico experimental design)

2021 ◽  
Author(s):  
Ben Stephens Hemingway ◽  
Paul Swinton ◽  
Ben Ogorek

Fitting an FFM via NLS in practice assumes that a unique optimal solution exists and can be found by the algorithm applied. However, this idealistic scenario may not hold for two reasons: 1) the absolute minimum may not be unique; and 2) local minima, saddle points, and/or plateau features may exist that cause problems for certain algorithms. If there exist different parameter sets in the domain that share the same global minimum under standard NLS, then there is a situation where parameters aren’t uniquely identified without additional constraints or regularisation terms. However, more likely is that problems with the typical FFM fitting process will stem from the existence of local minima, saddles, or plateau features that cause the algorithm to converge to a solution not equal to the global minimum. Local optima can provoke sensitivities in the fitting process for first and second-order algorithms that are by definition local optimisers. This manifests as sensitivity to initial parameter estimates (i.e., the starting point the algorithm initialises the search from). The extent of starting point sensitivity is largely unknown in the context of FFMs for common algorithms adopted and has not been studied directly. Given this concern, research reporting a single model solution derived from ‘one shot’ minimisation of NLS via typical first and second-order algorithms is fundamentally limited by possible uncertainty as to the suitability of fitted estimates as global minimisers. Therefore, the primary aim of this study was to investigate the sensitivity of a classical first-order search algorithm to selection of initial estimates when fitting a fitness-fatigue model (FFM) via nonlinear least-squares (NLS), and to subsequently assess the existence of local optima. A secondary aim of this study was to examine the implications of any findings in relation to previous research and provide considerations for future experimentation. The aims of the study were addressed through a computer experiment (in silico) approach that adopted a deterministic assumption the FFM completely specified athlete response. Under this assumption, two FFMs (standard, and fitness-delay) were simulated under a set of hypothetical model inputs and manually selected ‘true’ parameter values (for each FFM), generating a set of synthetic performance data. The two FFMs were refitted to the synthetic performance data without noise (and under the same model inputs) by the quasi-Newton L-BFGS-B algorithm in a repetitive fashion initiated from multiple starting points in the parameter space, attempting to at each search recover the true parameter values. Estimates obtained from this process were then further transformed into prediction errors quantifying in-sample model fit across the iterations and non-true solutions. Within the standard model scenarios, 69.1-70.3% of solutions found were the true parameters. In contrast, within the fitness-delay model scenarios, 17.6-17.9% of solutions found were the true parameters. A large number of unique non-true solutions were found for both the standard model (N=275-353) and the fitness-delay model (N=383-550) in this idealistic environment. Many of the non-true extrema found by the algorithm were local minima or saddles. Strong in-sample model fit was also observed across non-true solutions for both models. Collectively, these results indicate the typical NLS approach to fitting FFMs is harder for a hill-climbing algorithm to solve than previously recognised in the literature, particularly for models of higher complexity. The findings of this study add weight to the hypothesis that there exists substantial doubt in reported estimates across prior literature where local optimisers have been used or models more complex than the standard FFM applied, particularly when optimisation procedures reported have lacked the relevant detail to indicate that these issues have been considered. Future research should consider the use of global optimisation algorithms, hybrid approaches, or different perspectives (e.g., Bayesian optimisation).

2016 ◽  
Vol 46 (1) ◽  
pp. 44-67 ◽  
Author(s):  
Stephen Vaisey ◽  
Andrew Miles

The recent change in the general social survey (GSS) to a rotating panel design is a landmark development for social scientists. Sociological methodologists have argued that fixed-effects (FE) models are generally the best starting point for analyzing panel data because they allow analysts to control for unobserved time-constant heterogeneity. We review these treatments and demonstrate the advantages of FE models in the context of the GSS. We also show, however, that FE models have two rarely tested assumptions that can seriously bias parameter estimates when violated. We provide simple tests for these assumptions. We further demonstrate that FE models are extremely sensitive to the correct specification of temporal lags. We provide a simulation and a proof to show that the use of incorrect lags in FE models can lead to coefficients that are the opposite sign of the true parameter values.


2021 ◽  
Vol 13 (3) ◽  
pp. 1589
Author(s):  
Juan Sánchez-Fernández ◽  
Luis-Alberto Casado-Aranda ◽  
Ana-Belén Bastidas-Manzano

The limitations of self-report techniques (i.e., questionnaires or surveys) in measuring consumer response to advertising stimuli have necessitated more objective and accurate tools from the fields of neuroscience and psychology for the study of consumer behavior, resulting in the creation of consumer neuroscience. This recent marketing sub-field stems from a wide range of disciplines and applies multiple types of techniques to diverse advertising subdomains (e.g., advertising constructs, media elements, or prediction strategies). Due to its complex nature and continuous growth, this area of research calls for a clear understanding of its evolution, current scope, and potential domains in the field of advertising. Thus, this current research is among the first to apply a bibliometric approach to clarify the main research streams analyzing advertising persuasion using neuroimaging. Particularly, this paper combines a comprehensive review with performance analysis tools of 203 papers published between 1986 and 2019 in outlets indexed by the ISI Web of Science database. Our findings describe the research tools, journals, and themes that are worth considering in future research. The current study also provides an agenda for future research and therefore constitutes a starting point for advertising academics and professionals intending to use neuroimaging techniques.


2021 ◽  
Vol 13 (4) ◽  
pp. 2121 ◽  
Author(s):  
Ingrid Vigna ◽  
Angelo Besana ◽  
Elena Comino ◽  
Alessandro Pezzoli

Although increasing concern about climate change has raised awareness of the fundamental role of forest ecosystems, forests are threatened by human-induced impacts worldwide. Among them, wildfire risk is clearly the result of the interaction between human activities, ecological domains, and climate. However, a clear understanding of these interactions is still needed both at the global and local levels. Numerous studies have proven the validity of the socioecological system (SES) approach in addressing this kind of interdisciplinary issue. Therefore, a systematic review of the existing literature on the application of SES frameworks to forest ecosystems is carried out, with a specific focus on wildfire risk management. The results demonstrate the existence of different methodological approaches that can be grouped into seven main categories, which range from qualitative analysis to quantitative spatially explicit investigations. The strengths and limitations of the approaches are discussed, with a specific reference to the geographical setting of the works. The research suggests the importance of local community involvement and local knowledge consideration in wildfire risk management. This review provides a starting point for future research on forest SES and a supporting tool for the development of a sustainable wildfire risk adaptation and mitigation strategy.


2021 ◽  
Vol 2021 (6) ◽  
Author(s):  
Roberto Contino ◽  
Kevin Max ◽  
Rashmish K. Mishra

Abstract We consider the possible existence of a SM-neutral and light dark sector coupled to the visible sector through irrelevant portal interactions. Scenarios of this kind are motivated by dark matter and arise in various extensions of the Standard Model. We characterize the dark dynamics in terms of one ultraviolet scale Λuv, at which the exchange of heavy mediator fields generates the portal operators, and by one infrared scale ΛIR, setting the mass gap. At energies ΛIR « E « Λuv the dark sector behaves like a conformal field theory and its phenomenology can be studied model independently. We derive the constraints set on this scenario by high- and low-energy laboratory experiments and by astrophysical observations. Our results are conservative and serve as a minimum requirement that must be fulfilled by the broad class of models satisfying our assumptions, of which we give several examples. The experimental constraints are derived in a manner consistent with the validity of the effective field theory used to define the portal interactions. We find that high-energy colliders give the strongest bounds and exclude UV scales up to a few TeV, but only in specific ranges of the IR scale. The picture emerging from current searches can be taken as a starting point to design a future experimental strategy with broader sensitivity.


Genetics ◽  
2000 ◽  
Vol 155 (3) ◽  
pp. 1429-1437
Author(s):  
Oliver G Pybus ◽  
Andrew Rambaut ◽  
Paul H Harvey

Abstract We describe a unified set of methods for the inference of demographic history using genealogies reconstructed from gene sequence data. We introduce the skyline plot, a graphical, nonparametric estimate of demographic history. We discuss both maximum-likelihood parameter estimation and demographic hypothesis testing. Simulations are carried out to investigate the statistical properties of maximum-likelihood estimates of demographic parameters. The simulations reveal that (i) the performance of exponential growth model estimates is determined by a simple function of the true parameter values and (ii) under some conditions, estimates from reconstructed trees perform as well as estimates from perfect trees. We apply our methods to HIV-1 sequence data and find strong evidence that subtypes A and B have different demographic histories. We also provide the first (albeit tentative) genetic evidence for a recent decrease in the growth rate of subtype B.


2021 ◽  
Vol 14 (2) ◽  
pp. 1-36
Author(s):  
Theja K. Arachchi ◽  
Laurianne Sitbon ◽  
Jinglan Zhang ◽  
Ruwan Gamage ◽  
Priyantha Hewagamage

This article presents how young adults with intellectual disability (ID) from Sri Lanka, who had not previously used the Internet, interacted with Google search while enhancing their web search abilities throughout three web search workshops. Considering the little attention paid to the learning needs of people with ID in the current offering of web search learning tools, we iteratively developed a suite of learning tools to support our participants when they need help in the web search workshops. We employed an iterative participatory approach, with observations and semi-structured interviews, to reflect on how to design eLearning tools that enhance the participants’ interactions with web search. The qualitative thematic analysis resulted in five distinct themes on strategies to support, build on, and develop the abilities of young adults with IDs as they engage with Google search in their native language: application of existing abilities, basic skills to match learning needs, conceptual understanding, animations to facilitate visual memory, and promoting active engagement. These themes will be a starting point for understanding participants’ learning needs and behavior on web search, which would be important for future research on learning support as well as on software design.


Polymers ◽  
2021 ◽  
Vol 13 (4) ◽  
pp. 647
Author(s):  
Mohamed Saiful Firdaus Hussin ◽  
Aludin Mohd Serah ◽  
Khairul Azri Azlan ◽  
Hasan Zuhudi Abdullah ◽  
Maizlinda Izwana Idris ◽  
...  

Collecting information from previous investigations and expressing it in a scientometrics study can be a priceless guide to getting a complete overview of a specific research area. The aim of this study is to explore the interrelated connection between alginate, gelatine, and hydroxyapatite within the scope of bone tissue and scaffold. A review of traditional literature with data mining procedures using bibliometric analyses was considered to identify the evolution of the selected research area between 2009 and 2019. Bibliometric methods and knowledge visualization technologies were implemented to investigate diverse publications based on the following indicators: year of publication, document type, language, country, institution, author, journal, keyword, and number of citations. An analysis using a bibliometric study found that 7446 papers were located with the keywords “bone tissue” and “scaffold”, and 1767 (alginate), 185 (gelatine), 5658 (hydroxyapatite) papers with those specific sub keywords. The number of publications that relate to “tissue engineering” and bone more than doubled between 2009 (1352) and 2019 (2839). China, the United States and India are the most productive countries, while Sichuan University and the Chinese Academy of Science from China are the most important institutions related to bone tissue scaffold. Materials Science and Engineering C is the most productive journal, followed by the Journal of Biomedical Materials Research Part A. This paper is a starting point, providing the first bibliometric analysis study of bone tissue and scaffold considering alginate, gelatine and hydroxyapatite. A bibliometric analysis would greatly assist in giving a scientific insight to support desired future research work, not only associated with bone tissue engineering applications. It is expected that the analysis of alginate, gelatine and hydroxyapatite in terms of 3D bioprinting, clinical outcomes, scaffold architecture, and the regenerative medicine approach will enhance the research into bone tissue engineering in the near future. Continued studies into these research fields are highly recommended.


2020 ◽  
Vol 2020 (11) ◽  
Author(s):  
Yi Liao ◽  
Xiao-Dong Ma

Abstract We investigate systematically dimension-9 operators in the standard model effective field theory which contains only standard model fields and respects its gauge symmetry. With the help of the Hilbert series approach to classifying operators according to their lepton and baryon numbers and their field contents, we construct the basis of operators explicitly. We remove redundant operators by employing various kinematic and algebraic relations including integration by parts, equations of motion, Schouten identities, Dirac matrix and Fierz identities, and Bianchi identities. We confirm counting of independent operators by analyzing their flavor symmetry relations. All operators violate lepton or baryon number or both, and are thus non-Hermitian. Including Hermitian conjugated operators there are $$ {\left.384\right|}_{\Delta B=0}^{\Delta L=\pm 2}+{\left.10\right|}_{\Delta B=\pm 2}^{\Delta L=0}+{\left.4\right|}_{\Delta B=\pm 1}^{\Delta L=\pm 3}+{\left.236\right|}_{\Delta B=\pm 1}^{\Delta L=\mp 1} $$ 384 Δ B = 0 Δ L = ± 2 + 10 Δ B = ± 2 Δ L = 0 + 4 Δ B = ± 1 Δ L = ± 3 + 236 Δ B = ± 1 Δ L = ∓ 1 operators without referring to fermion generations, and $$ {\left.44874\right|}_{\Delta B=0}^{\Delta L=\pm 2}+{\left.2862\right|}_{\Delta B=\pm 2}^{\Delta L=0}+{\left.486\right|}_{\Delta B=\pm 1}^{\Delta L=\pm 3}+{\left.42234\right|}_{\Delta B=\mp 1}^{\Delta L=\pm 1} $$ 44874 Δ B = 0 Δ L = ± 2 + 2862 Δ B = ± 2 Δ L = 0 + 486 Δ B = ± 1 Δ L = ± 3 + 42234 Δ B = ∓ 1 Δ L = ± 1 operators when three generations of fermions are referred to, where ∆L, ∆B denote the net lepton and baryon numbers of the operators. Our result provides a starting point for consistent phenomenological studies associated with dimension-9 operators.


Open Medicine ◽  
2013 ◽  
Vol 8 (2) ◽  
pp. 157-165 ◽  
Author(s):  
Bartosz Krawczyk ◽  
Dragan Simić ◽  
Svetlana Simić ◽  
Michał Woźniak

AbstractPrimary headaches are common disease of the modern society and it has high negative impact on the productivity and the life quality of the affected person. Unfortunately, the precise diagnosis of the headache type is hard and usually imprecise, thus methods of headache diagnosis are still the focus of intense research. The paper introduces the problem of the primary headache diagnosis and presents its current taxonomy. The considered problem is simplified into the three class classification task which is solved using advanced machine learning techniques. Experiments, carried out on the large dataset collected by authors, confirmed that computer decision support systems can achieve high recognition accuracy and therefore be a useful tool in an everyday physician practice. This is the starting point for the future research on automation of the primary headache diagnosis.


2017 ◽  
Vol 23 (3) ◽  
pp. 721-734 ◽  
Author(s):  
Matthias Murawski ◽  
Markus Bick

Purpose Considering working in the digital age, questions on the consequences for the individual workers are, so far, often neglected. The purpose of this paper is to deal with the question of whether the digital competences of the workforce is a research topic. The authors argue for the thesis that it is indeed a research topic. Design/methodology/approach In addition to a literature analysis of the top IS, HR, and learning publications, non-scientific sources, as well as the opinions of the authors, are included. The authors’ thesis is challenged through a debate of corresponding pros and cons. Findings The definition of digital competences lacks scientific depth. Focussing on the workforce is valid, as a “lifelong” perspective is not mandatory for research. Digital competence research is a multidisciplinary task to which the IS field can make a valuable contribution. Research limitations/implications Although relevant references are included, some aspects are mainly driven by the opinions of the authors. The theoretical implications encompass a call for a scientific definition of digital competences. Furthermore, scholars should focus on the competences of the workforce, including occupations, roles, or industries. The authors conclude by providing a first proposal of a research agenda. Practical implications The practical implications include the alignment of multiple stakeholders for the design of “digital” curricula and the integration by HR departments of the construct of digital competences, e.g. for compensation matters and job requirements. Originality/value This paper is one of very few contributions in the area of the digital competences of the workforce, and it presents a starting point for future research activities.


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