scholarly journals Вacterial rot of tomatoes when grown in a protected ground

2020 ◽  
Vol 11 (3) ◽  
Author(s):  
V.A. Bohoslavets ◽  
◽  
Yu.V. Kolomiiets ◽  
L.M. Butsenko ◽  
Yu.M. Bohdan ◽  
...  

The specific conditions of the protected ground, the almost constant tomato culture without substitution of the substrate, the elevated temperature and humidity lead to the accumulation of a large number of pathogens of bacterial diseases, which limit the increase in yield of this crop. The aim of the work was to characterize the symptoms, determine the etiology of wet rot of tomatoes for growing in protected ground and propose measures to control the pathogen. The study was conducted by standard microbiological and phytopathological methods. The pathogenic properties of the isolates were studied on vegetative tomato plants using a suspension of bacterial cells with a titer of 107 CFU/ml. It was established that the defeat of tomato plants with soft bacterial rot in closed ground conditions prevails in the second half of the growing season. The development of the disease was 30‒34% for a prevalence of 45%. Diseases of tomato plants in greenhouses in the Kiev region of Ukraine are of bacterial origin, caused by the soft rot pathogen P. carotovorum subsp. carotovorum. Characteristic symptoms of wet tomato rot are discoloration, chlorosis and leaf necrosis, void stems, the appearance of depressed water-saturated areas in the stalk, accompanied by decay of the fetus. Effective control measures can be preventive and agricultural measures

2018 ◽  
Author(s):  
A.N. Ignatov ◽  
Yu.S. Panycheva ◽  
M.V. Voronina ◽  
F.S. Dzhalilov

Картофель поражается с заметным экономическим ущербом по меньшей мере 54 видами фитопатогенных грибов, 39 видами вирусов, 19 видами нематод, 3 видами фитоплазм и 11 видами бактерий. Бактериальные патогены вызывают болезни различной этиологии: от мокрой гнили до «зебры чипсов». Примерно 8-12 лет назад появились первые сообщения о проникновении и распространении новых возбудителей бактериозов во всех регионах России, в том числе о заболеваниях, вызываемых бактериями родов Dickeya dianthicola, D. solani и Clavibacter michiganensis subsp. michiganensis. В связи с усилением в России вредоносности бактериальных болезней картофеля, вызываемых различными группами бактерий, необходима точная идентификация патогенов, изучение путей их распространения, сохранения и разработка мер борьбы, ограничивающих распространение и обеспечивающих снижение ущерба от бактериальных болезней. Мы оценили распространение бактериальных патогенов картофеля как на основе собственных данных, так и по опубликованным сообщениям.Potato is affected at least by 54 species of phytopathogenic fungi, 39 viruses, 19 species of nematodes, 3 species of phytoplasmas, and 11 species of bacteria. Bacterial pathogens can cause diseases of different etiology: from "soft rot" to “zebra chips”. About 8-12 years ago, the increased severity of bacterial diseases in regions of Russia was reported, including diseases, caused by bacteria of genus Dickeya and Clavibacter michiganensis subsp. michiganensis. In connection with the increased harmfulness of bacterial diseases of sugar beet in Russia, caused by different groups of bacteria, we need an accurate identification of the pathogens, ways of their distribution, preservation, and search for control measures to limit the spread and reduce the damage from bacterial diseases of potato. We assessed and confirmed the distribution of potato bacterial pathogens based on own data as well as on reported incidence.


1970 ◽  
Vol 7 (1) ◽  
pp. 239-247 ◽  
Author(s):  
A. Islam ◽  
A.A. Trisha ◽  
M. Das ◽  
M.R. Amin

A total of 325 chickens, duck and pigeon, dead or sick, brought for diagnosis to the FDIL (field disease investigation laboratory), Guibandha during the period from July, 2005 to June, 2006 were taken into consideration in this study to know the seasonal occurrence of diseases and their comparison and to identify the effect of season and age for developing the diseases. Among the examined birds 251 were chicken including local and commercial birds, 67 were ducks and 7 were pigeon. The diagnosed diseases were parasitic diseases including coccidiosis, ascaridiosis and schistosomiasis; viral diseases including new castle disease (ND), infectious bursal disease (IBD), avian leucosis (AL) and duck plague (DP), bacterial diseases including salmonellosis, pasteurellosis and colibacillosis, non-infectious diseases including ascites, egg bound, cannibalism and fatty liver hemorrhagic disease, MC complex (mycoplasmosis-colibacillosis complex) and fungal infection including aspergillosis. The occurrence of parasitic diseases (86.2%) was the highest, followed by viral diseases (32.6%), bacterial diseases (25.8%) and non-infectious diseases (12.9%). In chickens the occurrence of parasitic diseases was the highest (88.4%) followed by bacterial diseases (28.3%), viral diseases (27.1%), non-infectious diseases (16.30%), MC complex (3.6%) and aspergillosis (1.6%). Bacterial diseases were significantly (p<0.05) higher in winter as well as in rainy season compared to summer season. Occurrence of pasteurellosis was significantly (p<0.05) higher in winter (p<0.05) and rainy (p<0.01) season compared to summer season. Parasitic diseases were significantly (p<0.01) higher in winter (97.2%) compared to summer (83.3%). The occurrence of coccidiosis was 88% and it was significantly (p<0.01) higher in winter (97.2%) compared to summer (82.2%). Egg bound was present among 10% birds and it was significantly (p<0.05) lower in rainy season compared to summer season. In case of ducks the presence of parasitic diseases was the highest (77.60%) followed by viral diseases (56.7%), bacterial diseases (16.40%) and non-infectious diseases (1.50%). Duck plague was present in 56.7% birds and it was significantly (p<0.05) higher in winter (80%) season compared to summer (44.8%) season. The occurrence of duck plague was observed in 56.70% birds and it was significantly (p<0.05) higher in laying stage (67.60%) than pullet stage (43.30%). Incase of pigeon 28.60% birds showed bacterial infections and 85.70% birds showed parasitic infestations. Present study suggests that various infectious and non-infectious diseases are prevalent among the poultry of Guibandha district. So effective control measures should be taken to minimize this problem.


Plant Disease ◽  
2011 ◽  
Vol 95 (8) ◽  
pp. 1026-1026 ◽  
Author(s):  
B.-D. Gao ◽  
X.-L. Wang ◽  
H. Xia

A new disease on globe artichoke (Cynara scolymus L.) was observed in the springs of 2008 and 2009 and during the spring and fall seasons of 2010 in commercial fields (nearly 1,000 ha) in Changde, Hunan Province, China. Characteristic symptoms were wilting and necrosis of the outermost leaves and dark brown discoloration of the vascular tissue and pith of the stem base. Eventually, the plants wilted and died. Nearly 5, 35, and 4% (2008, 2009, and 2010, respectively) of the artichoke fields were destroyed because of the disease. Manual weeding and cuttings often led to the development of typical soft rot during propagation. To investigate the causal agent of the disease, isolations were made from rotted stems of field artichoke plants on nutrient agar (NA). Bacteria consistently isolated from the diseased tissues formed gray-white, glossy, convex, translucent, and round colonies on NA. The bacterial cells were gram-negative rods with two to eight peritrichous flagella. Ten isolates were negative for oxidase, arginine dehydrolase, H2S, gelatin liquefaction, and tryptophan ammonialyase. Isolates were positive for catalase, reduced NO3 to NO2, indole, glucuroide, galactosidase, Voges-Proskauer test, and β-galactosidase, along with being facultatively anaerobic and insensitive to erythromycin (40 μg/ml). Negative results were obtained for utilization of maltose, gluconate, and phenylacetic acid, and positive results were obtained from arabinose, glucose, mannose, N-acetyl-glucosamine, mannitol, and sodium citrate for all isolates. Acid was produced from glucose, inositol, rhamnose, melibiose, arabinose, mannitol, sucrose, and amarogentin. All test results were similar to reference strain PCC1000 (GenBank Accession No. JF721959) of Pectobacterium carotovorum subsp. carotovorum. These isolates could also cause soft rot of Chinese cabbage stem, carrot slice, pepper, lettuce and artichoke stems, and tomato and potato slices within 48 h at 28°C in an artificial inoculation test (3). PCR amplification was carried out by utilizing universal 16S rDNA primer pair 16SF/16SR and pel gene primers Y1/Y2 (1). The 16S rDNA and pel gene sequences of isolate HNXDT002 (GenBank Accession Nos. JF721958 and JF721960, respectively) had 99 and 93% nucleotide identity with strains of P. carotovorum subsp. carotovorum (GenBank Accession Nos. U80197 and CP001657, respectively). Pathogenicity was confirmed by needle-stab inoculation (1 × 108 CFU/ml) at the stem on three healthy artichoke plants held at 28°C for 48 h. Sterile distilled water was used as a negative control. Within 72 h after inoculation, water-soaking and soft-rot symptoms were observed on all inoculated artichoke plants, while controls remained healthy. The bacterium was recovered only from rotted stems of inoculated plants. In recent years, P. carotovorum was reported on such plants as Pinellia ternata (4) and Chinese cabbage (2) in China. To our knowledge, this is the first report of bacterial rot disease caused by P. carotovorum subsp. carotovorum on artichoke in China. References: (1) D. J. Brenner et al. Bergey's Manual of Systematic Bacteriology. Vol. 2. Springer, NY, 2005. (2)Y. Fang et al. Acta Microbiol. Sinica 44:136, 2004. (3) H. Yi-Bo et al. Acta Phytopathol. Sinica 37:338, 2007. (4) F. X. Ying et al. Plant Dis. 91:1359, 2007.


2015 ◽  
Vol 5 (1) ◽  
pp. 513-522
Author(s):  
Jean-Claude N'ZI ◽  
Lassina FONDIO ◽  
Mako Francois De Paul N’GBESSO ◽  
Andé Hortense DJIDJI ◽  
Christophe KOUAME

Thirty accessions of tomato including twenty eight introduced accessions from The World Vegetable Center-AVRDC and as controls, two commercial varieties Mongal and Calinago, were assessed for agronomic performances at the Experimentation and Production Station of Angud dou of the National Agronomic Research Centre (CNRA) located in the South of Cote d Ivoire. The trial was arranged in a randomized block with three replications. The following parameters were determined at vegetative development stage: plant height at flowering stage, susceptibility of accessions to diseases, day to 50% flowering and day of first harvest, production duration, fruit length, fruit diameter, total number of fruits, number of fruits per plant, potential yield, net yield and fruit damage rate. Results showed that the commercial variety Mongal, with a potential yield of 15.9 and a net yield of 13.1 t ha-1, was the most productive. All the introduced accessions from AVRDC recorded the lowest potential yields from 2.2 to 9.7 t ha-1, and net yields from 1.7 to 8.6 t ha-1. In addition, accessions WVCT8, FMTT847 and WVCT13 were severely infested by bacterial wilt. The reduction of the net yield of tomato accessions resulted in the high fruit damage rates. For the future tomato breeding work, it would be appropriate to introduce into the trials bacterial diseases tolerant varieties. Moreover, some studies could be undertaken to determine the nature of the bacteria involved in the plant wilting and to find out the causal agent of the tomato plants burning at the fructification stage reducing the harvest duration.


2020 ◽  
Author(s):  
Lukman Olagoke ◽  
Ahmet E. Topcu

BACKGROUND COVID-19 represents a serious threat to both national health and economic systems. To curb this pandemic, the World Health Organization (WHO) issued a series of COVID-19 public safety guidelines. Different countries around the world initiated different measures in line with the WHO guidelines to mitigate and investigate the spread of COVID-19 in their territories. OBJECTIVE The aim of this paper is to quantitatively evaluate the effectiveness of these control measures using a data-centric approach. METHODS We begin with a simple text analysis of coronavirus-related articles and show that reports on similar outbreaks in the past strongly proposed similar control measures. This reaffirms the fact that these control measures are in order. Subsequently, we propose a simple performance statistic that quantifies general performance and performance under the different measures that were initiated. A density based clustering of based on performance statistic was carried out to group countries based on performance. RESULTS The performance statistic helps evaluate quantitatively the impact of COVID-19 control measures. Countries tend show variability in performance under different control measures. The performance statistic has negative correlation with cases of death which is a useful characteristics for COVID-19 control measure performance analysis. A web-based time-line visualization that enables comparison of performances and cases across continents and subregions is presented. CONCLUSIONS The performance metric is relevant for the analysis of the impact of COVID-19 control measures. This can help caregivers and policymakers identify effective control measures and reduce cases of death due to COVID-19. The interactive web visualizer provides easily digested and quick feedback to augment decision-making processes in the COVID-19 response measures evaluation. CLINICALTRIAL Not Applicable


Author(s):  
Ting Wan Tan ◽  
Han Ling Tan ◽  
Man Na Chang ◽  
Wen Shu Lin ◽  
Chih Ming Chang

(1) Background: The implementation of effective control measures in a timely fashion is crucial to control the epidemic outbreak of COVID-19. In this study, we aimed to analyze the control measures implemented during the COVID-19 outbreak, as well as evaluating the responses and outcomes at different phases for epidemic control in Taiwan. (2) Methods: This case study reviewed responses to COVID-19 and the effectiveness of a range of control measures implemented for epidemic control in Taiwan and assessed all laboratory-confirmed cases between 11 January until 20 December 2020, inclusive of these dates. The confirmation of COVID-19 infection was defined as the positive result of a reverse-transcriptase–polymerase-chain-reaction test taken from a nasopharyngeal swab. Test results were reported by the Taiwan Centers for Disease Control. The incidence rate, mortality rate, and testing rate were compiled, and the risk ratio was provided to gain insights into the effectiveness of prevention measures. (3) Results and Discussion: This study presents retrospective data on the COVID-19 incidence rate in Taiwan, combined with the vital preventive control measures, in a timeline of the early stage of the epidemic that occurred in Taiwan. The implementation of multiple strategy control measures and the assistance of technologies to control the COVID-19 epidemic in Taiwan led to a relatively slower trend in the outbreak compared to the neighboring countries. In Taiwan, 766 confirmed patients were included, comprised of 88.1% imported cases and 7.2% local transmission cases, within the studied period. The incidence rate of COVID-19 in Taiwan during the studied period was 32 per million people, with a mortality rate of 0.3 per million people. Our analysis showed a significantly raised incidence risk ratio in the countries of interest in comparison to Taiwan during the study period; in the range of 1.9 to 947.5. The outbreak was brought under control through epidemic policies and hospital strategies implemented by the Taiwan Government. (4) Conclusion: Taiwan’s preventive strategies resulted in a drastically lower risk for Taiwan nationals of contracting COVID-19 when new pharmaceutical drug or vaccines were not yet available. The preventive strategies employed by Taiwan could serve as a guide and reference for future epidemic control strategies.


2020 ◽  
Vol 13 (1) ◽  
pp. 238
Author(s):  
Alice Giusti ◽  
Enrica Ricci ◽  
Laura Gasperetti ◽  
Marta Galgani ◽  
Luca Polidori ◽  
...  

Proper investment in mushroom production (farming and wild mushroom picking activities) may represent a winning strategy for many countries, including Italy, to better face the problems of food security and environmental impact, and to break away from imports, enhancing the local products. However, the risk related to the consumption of poisoning species requires governments to implement or reinforce effective control measures to protect consumers. Mushroom identification by phenotype observation is hardly applicable if morphologically-similar species, non-whole specimens, or clinical samples are involved. Genotypic analysis is a valid alternative. An ongoing research project involving the Experimental Zooprophylactic Institute of Lazio and Tuscany, the regional Mycological Inspectorate, the Tuscany Mycological Groups Association, and the Department of Veterinary Sciences of the University of Pisa aims to reinforce the collaboration among institutions for the management of mushroom poisoning. The core’s project aims to develop an internal genetic database to support the identification of wild and cultivated mushroom species in the Italian territory. The database will include Internal Transcribed Spacer (ITS) sequences retrieved from official databases (the NCBI GenBank and the BOLD system) which are considered to be reliable, after a proper selection process, and sequences from specimens collected directly and identified by expert mycologists. Once it is validated, the database will be available and further implementable by the official network of national laboratories.


2020 ◽  
Vol 41 (S1) ◽  
pp. s412-s412
Author(s):  
Sarah Redmond ◽  
Jennifer Cadnum ◽  
Basya Pearlmutter ◽  
Natalia Pinto Herrera ◽  
Curtis Donskey

Background: Transmission of healthcare-associated pathogens such as Clostridioides difficile and methicillin-resistant Staphylococcus aureus (MRSA) is a persistent problem in healthcare facilities despite current control measures. A better understanding of the routes of pathogen transmission is needed to develop effective control measures. Methods: We conducted an observational cohort study in an acute-care hospital to identify the timing and route of transfer of pathogens to rooms of newly admitted patients with negative MRSA nares results and no known carriage of other healthcare-associated pathogens. Rooms were thoroughly cleaned and disinfected prior to patient admission. Interactions of patients with personnel and portable equipment were observed, and serial cultures for pathogens were collected from the skin of patients and from surfaces, including those observed to come in contact with personnel and equipment. For MRSA, spa typing was used to determine relatedness of patient and environmental isolates. Results: For the 17 patients enrolled, 1 or more environmental cultures became positive for MRSA in rooms of 10 patients (59%), for C. difficile in rooms of 2 patients (12%) and for vancomycin-resistant enterococci (VRE) in rooms of 2 patients (12%). The patients interacted with an average of 2.4 personnel and 0.6 portable devices per hour of observation. As shown in Figure 1, MRSA contamination of the floor occurred rapidly as personnel entered the room. In a subset of patients, MRSA was subsequently recovered from patients’ socks and bedding and ultimately from the high-touch surfaces in the room (tray table, call button, bedrail). For several patients, MRSA isolates recovered from the floor had the same spa type as isolates subsequently recovered from other sites (eg, socks, bedding, and/or high touch surfaces). The direct transfer of healthcare-associated pathogens from personnel or equipment to high-touch surfaces was not detected. Conclusions: Healthcare-associated pathogens rapidly accumulate on the floor of patient rooms and can be transferred to the socks and bedding of patients and to high-touch surfaces. Healthcare facility floors may be an underappreciated source of pathogen dissemination not addressed by current infection control measures.Funding: NoneDisclosures: None


BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Cui Zhang ◽  
Cihan Oguz ◽  
Sue Huse ◽  
Lu Xia ◽  
Jian Wu ◽  
...  

Abstract Background Rodent malaria parasites are important models for studying host-malaria parasite interactions such as host immune response, mechanisms of parasite evasion of host killing, and vaccine development. One of the rodent malaria parasites is Plasmodium yoelii, and multiple P. yoelii strains or subspecies that cause different disease phenotypes have been widely employed in various studies. The genomes and transcriptomes of several P. yoelii strains have been analyzed and annotated, including the lethal strains of P. y. yoelii YM (or 17XL) and non-lethal strains of P. y. yoelii 17XNL/17X. Genomic DNA sequences and cDNA reads from another subspecies P. y. nigeriensis N67 have been reported for studies of genetic polymorphisms and parasite response to drugs, but its genome has not been assembled and annotated. Results We performed genome sequencing of the N67 parasite using the PacBio long-read sequencing technology, de novo assembled its genome and transcriptome, and predicted 5383 genes with high overall annotation quality. Comparison of the annotated genome of the N67 parasite with those of YM and 17X parasites revealed a set of genes with N67-specific orthology, expansion of gene families, particularly the homologs of the Plasmodium chabaudi erythrocyte membrane antigen, large numbers of SNPs and indels, and proteins predicted to interact with host immune responses based on their functional domains. Conclusions The genomes of N67 and 17X parasites are highly diverse, having approximately one polymorphic site per 50 base pairs of DNA. The annotated N67 genome and transcriptome provide searchable databases for fast retrieval of genes and proteins, which will greatly facilitate our efforts in studying the parasite biology and gene function and in developing effective control measures against malaria.


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