scholarly journals Isolation, characterization, and antimicrobial activity of Actinomycetes isolated from garden soil

2020 ◽  
Vol 11 (1) ◽  
pp. 1-12
Author(s):  
Jacintha Jasmine Doss ◽  
Anita Rosemarie Joseph Singh
Keyword(s):  
Antimicrobial Activity ◽  
Mycelial Growth ◽  
Rhizosphere Soil ◽  
Maximum Activity ◽  
Soil Samples ◽  
Garden Soil ◽  
Enzyme Degradation ◽  
Heat Treated ◽  
Show Maximum Activity ◽  
Different Strains

Five different strains of Actinomycetes were isolated from rhizosphere soil sample taken from Tulsi gardens of Kayathar, Tuticorin District. Heat treated Tulsi growing rhizosphere soil samples (Kayathar, Tuticorin District) were subjected to serial dilution and plated on starch casein medium, incubated at 37 °C for 7 - 14 days. The isolated strains were subjected to morphological, biochemical and cultural characterisation to study their spore morphology, asexual reproductive spores, substrate mycelial growth and enzyme degradation. Tests were performed as per International Streptomyces Project (ISP). Morphological and cultural characteristics showed that the strains AJ1, AJ2, AJ3, AJ4 and AJ5 belonged to the genus Actinomycete. The cultures showed substrate and aerial mycelial growth and also soluble pigments. Based on their morphology the isolates were subjected to antimicrobial activity against pathogens. Antimicrobial activity was performed against seven clinical isolates. AJ1 was found to show maximum activity against Klebsiella, S.typhi and Enterobacter whereas AJ5 was found to show inhibitory activity against Klebsiella.

Screening and antimicrobial activity of actinomycetes isolated from the rhizosphere of Clitoria ternatea

2016 ◽  
Vol 1 (01) ◽  
Author(s):  
Vemavarapu Bhaskara Rao ◽  
Kandlagunta Guru Prasad ◽  
Krishna Naragani ◽  
Vijayalakshmi Muvva
Keyword(s):  
Escherichia Coli ◽  
Staphylococcus Aureus ◽  
Antimicrobial Activity ◽  
Candida Albicans ◽  
Calcium Carbonate ◽  
Rhizosphere Soil ◽  
Soil Samples ◽  
Antimicrobial Spectrum ◽  
Clitoria Ternatea ◽  
Primary Screening

The air dried rhizosphere soil samples pretreated with calcium carbonate was employed for the isolation of actinomycete strains. Serial dilution plate technique was used for the isolation of actinomycetes. A total of 20 actinomycete strains designated as BS1-BS20 were isolated from the rhizosphere of medicinal plant Clitoria ternatea. All the 20 strains were subjected to primary screening for antimicrobial activity. Among the 20 strains screened, 10 strains exhibited high antimicrobial spectrum against Staphylococcus aureus, Escherichia coli and Candida albicans.

Comparative study of antimicrobial efficiency of biosurfactant producing Pseudomonas spp. from different soil samples

2020 ◽  
Vol 5 ◽  
pp. 1
Author(s):  
Mahulkar Ankita Vidyadhar Vaijayanti
Keyword(s):  
Antimicrobial Activity ◽  
Soil Sample ◽  
Contaminated Soil ◽  
Low Cost ◽  
Soil Samples ◽  
Garden Soil ◽  
Pseudomonas Spp ◽  
Emulsification Index ◽  
Antimicrobial Efficiency ◽  
Test Drop

Amphiphilic biosurfactants are surface-active biological molecules secreted by hydrocarbanoclastic microorganisms. Biosurfactants are eco-friendly, less toxic, biodegradable, and low-cost material, so it has more advantages over chemical surfactants. In this research, Pseudomonas spp., biosurfactant producing microorganisms isolated from different sources of soil samples. IS1, IS2, IS3, IS4 isolates obtained from Garden soil sample; Metal contaminated soil sample; Petroleum contaminated soil sample; Oil contaminated soil sample; respectively. Each isolates identified as Pseudomonas spp. Furthermore, screened for biosurfactant producers. Each isolate showed positive results for the hemolysis test, drop collapse test, oil displacement test, and emulsification test. All isolate incubated in mineral salt medium for biosurfactant production. Biosurfactant extracted from IS1, IS2, IS3, IS4 showed 35%, 65%, 20%, 52% emulsification index respectively. Antimicrobial activity of extracted biosurfactants against pathogenic microorganisms checked by agar cup method. IS2 isolate shows the highest antimicrobial activity among all. All isolate showed a higher zone of inhibition against gram-positive microorganisms than gram-negative microbes. The purpose of this study involves the assessment of the antimicrobial activity of biosurfactant producers from the soil environment.

Mycelial Growth and Antimicrobial Activity of Pleurotus Species (Agaricomycetes)

2018 ◽  
Vol 20 (2) ◽  
pp. 191-200 ◽  
Author(s):  
Teresa A. Castillo ◽  
Renata A. Lemos ◽  
José Raimundo G. Pereira ◽  
José Maria A. Alves ◽  
Maria Francisca S. Teixeira
Keyword(s):  
Antimicrobial Activity ◽  
Mycelial Growth ◽  
Pleurotus Species

KEBERADAAN BAKTERI PELARUT FOSFAT DAN AKTIVITAS ENZIM FOSFATASE TANAH DAERAH PERAKARAN TANAMAN OBAT DARI KEBUN RAYA CIBODAS

2018 ◽  
Vol 6 (3) ◽  
Author(s):  
Suliasih Suliasih
Keyword(s):  
Alkaline Phosphatase ◽  
Soil Sample ◽  
Rhizosphere Soil ◽  
Botanical Garden ◽  
Soil Enzyme ◽  
Soil Samples ◽  
Phosphate Solubilizing Bacteria ◽  
Bacillus Sp ◽  
Phosphate Solubilizing ◽  
Serratia Rubidaea

A study was undertaken to investigate to occurance of phosphate solubilizing bacteria from rhizosphere soil samples of medicine plants in Cibodas Botanical Garden. 13 soil samples of medicine plants are collected randomly The result shows that 71 isolates of phosphate solubilizing bacteria were isolated, and 10 species of these organism was identified as Azotobacter sp, Bacillus sp, Chromobacterium sp, C.violaceum, Citrobacter sp. , Enterobacter sp., E. liquefaciens. Nitrosomonas sp., Serratia rubidaea, Sphaerotillus natans. Azotobacter sp. And Bacillus sp. Are found in all of soil tested. Conversely, Serratia rubidaea is only in the sample from rhizosphere of Plantago mayor The activity of acid alkaline phosphatase in soil tested ranged from 0.78 – 60,18 ugp nitrophenole/g/h, with the higest values being recorded in soil sample from rhizosphere of “Lavender”.Keywords : phosphate solubilizing bacteria, soil enzyme phosphatase

Transport of escherichia coli through soil to groundwater traced by randomly amplified polymorphic DNA (RAPD)

1997 ◽  
Vol 35 (11-12) ◽  
pp. 351-357 ◽  
Author(s):  
R. Rothmaier ◽  
A. Weidenmann ◽  
K. Botzenhart
Keyword(s):  
Negative Impact ◽  
Random Amplified Polymorphic Dna ◽  
Coli Strain ◽  
Soil Samples ◽  
Test Field ◽  
Liquid Manure ◽  
E Coli ◽  
Rapd Pattern ◽  
Geological Situation ◽  
Different Strains

Isolates (50) of E. coli obtained from liquid manure (20 bovine, 20 porcine) were genotyped using random amplified polymorphic DNA (RAPD). Typing revealed 9 and 14 different strains in bovine and porcine liquid manure respectively with no strains in common. One porcine strain, showing a simple RAPD pattern, was subcultured and spread on a test field (1.5l/m2 at 1010 cfu/l) in a drinking water protection zone with loamy to sandy sediments in the Donauried area, Baden-Wurttemberg. Soil samples and groundwaters were collected at monthly intervals October 1994 – June 1995 during which 114 E. coli isolates were recovered. The first occurrence and maximum concentration of E. coli in soil samples taken from more than 20cm depth was in January 1995, declining rapidly with depth and time. All isolates from soil and only one from groundwater showed the RAPD pattern of the spread E. coli strain. The results could not demonstrate a severe negative impact of the spreading of liquid manure on the bacteriological quality of the groundwater in the given geological situation. The distinct strain patterns found in different kinds of liquid manure suggest that genotyping of E. coli by RAPD may be an adequate tool for tracing sources of faecal contamination.

scholarly journals Trace elements in aerial parts and rhizosphere of Thymus pannonicus All.

2011 ◽  
Vol 6 (4) ◽  
pp. 616-623 ◽  
Author(s):  
Jelena Arsenijević ◽  
Slavica Ražić ◽  
Zoran Maksimović ◽  
Svetlana Đogo
Keyword(s):  
Trace Elements ◽  
Soil Acidity ◽  
Rhizosphere Soil ◽  
Absorption Spectrometry ◽  
Soil Samples ◽  
Acid Digestion ◽  
Aerial Parts ◽  
Physiological Properties ◽  
Flameless Atomic Absorption Spectrometry ◽  
Zinc Levels

AbstractThis paper brings out the results of the study on the levels of selected trace elements (Cu, Fe, Mn, Zn and Cr) in aerial parts of Thymus pannonicus All. (Lamiaceae) and rhizosphere soil from twelve locations in Serbia. Prior to assays by flame and flameless atomic absorption spectrometry, samples were subjected to microwave-assisted acid digestion. Real and potential acidity of soil samples were also measured. Obtained results for soil samples, although slightly higher for some elements (Cu: 12.38–45.18 mg/kg; Fe: 22102–46193 mg/kg; Mn: 776.95–4901.27 mg/kg; Zn: 62.27–214.02 mg/kg; Cr: 48.86–69.13 mg/kg), were found to fit into biogeochemical background. Element contents in plant samples differed depending on collecting site (Cu: 5.26–14.07 mg/kg; Fe: 25.92–1454.07 mg/kg; Mn: 89.29–278.25 mg/kg; Zn: 1.81–10.64 mg/kg; Cr: 1.11–3.51 mg/kg), which can be partly explainable by different nutrient availability influenced by soil acidity. Zinc levels in T. pannonicus were below expected and seem to be strongly influenced by plant physiological properties.

scholarly journals The Design of Alapropoginine, a Novel Conjugated Ultrashort Antimicrobial Peptide with Potent Synergistic Antimicrobial Activity in Combination with Conventional Antibiotics

Antibiotics ◽  
2021 ◽  
Vol 10 (6) ◽  
pp. 712
Author(s):  
Ali Salama ◽  
Ammar Almaaytah ◽  
Rula M. Darwish
Keyword(s):  
Antimicrobial Activity ◽  
Hemolytic Activity ◽  
Antimicrobial Agents ◽  
Antimicrobial Activities ◽  
Resistant Bacteria ◽  
Human Red Blood Cells ◽  
Drug Resistant Bacteria ◽  
Different Strains ◽  
Conventional Antibiotics

(1) Background: Antimicrobial resistance represents an urgent health dilemma facing the global human population. The development of novel antimicrobial agents is needed to face the rising number of resistant bacteria. Ultrashort antimicrobial peptides (USAMPs) are considered promising antimicrobial agents that meet the required criteria of novel antimicrobial drug development. (2) Methods: Alapropoginine was rationally designed by incorporating arginine (R), biphenylalanine (B), and naproxen to create an ultrashort hexapeptide. The antimicrobial activity of alapropoginine was evaluated against different strains of bacteria. The hemolytic activity of alapropoginine was also investigated against human erythrocytes. Finally, synergistic studies with antibiotics were performed using the checkerboard technique and the determination of the fractional inhibitory index. (3) Results: Alapropoginine displayed potent antimicrobial activities against reference and multi-drug-resistant bacteria with MIC values of as low as 28.6 µg/mL against methicillin-resistant S. aureus. Alapropoginine caused negligible toxicity toward human red blood cells. Moreover, the synergistic studies showed improved activities for the combined conventional antibiotics with a huge reduction in their antimicrobial concentrations. (4) Conclusions: The present study indicates that alapropoginine exhibits promising antimicrobial activity against reference and resistant strains of bacteria with negligible hemolytic activity. Additionally, the peptide displays synergistic or additive effects when combined with several antibiotics.

scholarly journals Antimicrobial activity screening of rhizosphere soil bacteria from tomato and genome-based analysis of their antimicrobial biosynthetic potential

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Lu Zhou ◽  
Chunxu Song ◽  
Zhibo Li ◽  
Oscar P. Kuipers
Keyword(s):  
Antimicrobial Activity ◽  
Plant Growth ◽  
Disease Control ◽  
Pseudomonas Syringae ◽  
Rhizosphere Soil ◽  
Erwinia Carotovora ◽  
Gene Clusters ◽  
Vast Number ◽  
Tomato Disease

Abstract Background Tomato plant growth is frequently hampered by a high susceptibility to pests and diseases. Traditional chemical control causes a serious impact on both the environment and human health. Therefore, seeking environment-friendly and cost-effective green methods in agricultural production becomes crucial nowadays. Plant Growth Promoting Rhizobacteria (PGPR) can promote plant growth through biological activity. Their use is considered to be a promising sustainable approach for crop growth. Moreover, a vast number of biosynthetic gene clusters (BGCs) for secondary metabolite production are being revealed in PGPR, which helps to find potential anti-microbial activities for tomato disease control. Results We isolated 181 Bacillus-like strains from healthy tomato, rhizosphere soil, and tomato tissues. In vitro antagonistic assays revealed that 34 Bacillus strains have antimicrobial activity against Erwinia carotovora, Pseudomonas syringae; Rhizoctonia solani; Botrytis cinerea; Verticillium dahliae and Phytophthora infestans. The genomes of 10 Bacillus and Paenibacillus strains with good antagonistic activity were sequenced. Via genome mining approaches, we identified 120 BGCs encoding NRPs, PKs-NRPs, PKs, terpenes and bacteriocins, including known compounds such as fengycin, surfactin, bacillibactin, subtilin, etc. In addition, several novel BGCs were identified. We discovered that the NRPs and PKs-NRPs BGCs in Bacillus species are encoding highly conserved known compounds as well as various novel variants. Conclusions This study highlights the great number of varieties of BGCs in Bacillus strains. These findings pave the road for future usage of Bacillus strains as biocontrol agents for tomato disease control and are a resource arsenal for novel antimicrobial discovery.

scholarly journals Trichoderma asperellum (NST-009): A Possible Thai Native Antagonistic Fungus for Managing White Root Disease of Rubber Trees (Hevea brasiliensis)

2021 ◽  
Author(s):  
Athakorn Promwee ◽  
Warin Intana ◽  
Thanet Khomphet
Keyword(s):  
Open Field ◽  
Mycelial Growth ◽  
Rhizosphere Soil ◽  
Severity Index ◽  
Root Disease ◽  
Antifungal Metabolite ◽  
Commercial Strain ◽  
Native Strains ◽  
Mycelial Development

Background: Rigidoporus microporus causes white root disease, which is one of the most harmful diseases in rubber trees in Thailand. The objectives of this study were to determine the efficacy of T. asperellum NST-009 and its antifungal metabolite in inhibiting R. microporus mycelial development and efficacy of T. asperellum NST-009 in controlling white root disease of rubber trees in an open-field house experiment. Methods: Four native strains of T. asperellum from Nakhon Si Thammarat Province and a commercial strain of Thailand were used in this study. This study was conducted at Agricultural Microbial Production and Service Center, Walailak University, Nakhon Si Thammarat, Thailand, during the period 2017-2020. Result: T. asperellum NST-009 significantly inhibited R. microporus mycelial growth by 77.07% in vitro and its antifungal metabolite from the culture filtrate of T. asperellum NST-009 inhibited mycelial growth by 92.31%. T. asperellum NST-009 reduced the disease severity index by 76.38% in the open-field house experiment compared to the inoculated control. Furthermore, T. asperellum NST-009 was found to survive in rhizosphere soil at 4.50 × 105 CFU/g soil and colonized the roots at 100.00%.

scholarly journals Studies on the arbuscular mycorrhizal fungal association in some medicinal plant species of paithal hills, western ghats kannur district, kerala

2020 ◽  
Vol 7 (2) ◽  
pp. 30-38
Author(s):  
Santhoshkumar S ◽  
Nagarajan N ◽  
Sree Priya S
Keyword(s):  
Plant Species ◽  
Root Colonization ◽  
Rhizosphere Soil ◽  
Fungal Spores ◽  
Arbuscular Mycorrhizal ◽  
Soil Samples ◽  
Fungal Colonization ◽  
The Family ◽  
Spore Population ◽  
Arbuscular Mycorrhizal Fungal

In the present study to analyzed that the arbuscular mycorrhizal fungal spores in root colonization and spore population in rhizosphere soils samples in various medicinal at Paithal hills,Western Ghats of Kannur district, Kerala, India. Root and rhizosphere soil samples were collected during the month of August, 2018-March, 2019 from the surface to 30 cm depth as well as pH were also recorded. Totally 30 plant species belonging to 19 families were collected and identified. The present result showed arbuscular mycorrhizal spore population in the rhizosphere soil and root colonization of all the plant species. A total of 19 AM fungal spores were recovered from the rhizosphere soil samples in this study region. The Glomus was dominant had seen in rhizosphere soil samples in all the medicinal plant species. The maximum spore population was found in the rhizosphere soil samples of Mimosa pudica (590/100g of soil) which belongs to the family Mimosaceae and the lowest spore population was observed in the Terminalia bellirica 135/100g of soil) belongs to Combretaceae family. The highest  78 % AM fungal colonization was found in roots of Euphorbia hirta belongs to the family Euphorbiaceae. While the lowest 11 % AM fungal colonization was found in the root of Sida acuta belongs to the family Malvaceae.

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