scholarly journals Amylases: Biofilm Inducer or Biofilm Inhibitor?

2021 ◽  
Vol 11 ◽  
Author(s):  
Dibyajit Lahiri ◽  
Moupriya Nag ◽  
Ritwik Banerjee ◽  
Dipro Mukherjee ◽  
Sayantani Garai ◽  
...  
Keyword(s):  
Antimicrobial Agent ◽  
Extracellular Polymeric Substances ◽  
Binding Protein ◽  
The Other ◽  
Natural Environments ◽  
Salivary Amylase ◽  
Functional Characteristics ◽  
Microbial Cells ◽  
Abiotic Surfaces ◽  
Biofilm Inhibitor

Biofilm is a syntrophic association of sessile groups of microbial cells that adhere to biotic and abiotic surfaces with the help of pili and extracellular polymeric substances (EPS). EPSs also prevent penetration of antimicrobials/antibiotics into the sessile groups of cells. Hence, methods and agents to avoid or remove biofilms are urgently needed. Enzymes play important roles in the removal of biofilm in natural environments and may be promising agents for this purpose. As the major component of the EPS is polysaccharide, amylase has inhibited EPS by preventing the adherence of the microbial cells, thus making amylase a suitable antimicrobial agent. On the other hand, salivary amylase binds to amylase-binding protein of plaque-forming Streptococci and initiates the formation of biofilm. This review investigates the contradictory actions and microbe-associated genes of amylases, with emphasis on their structural and functional characteristics.

Effects of carbon to nitrogen ratios on amounts and composition of Bacillus subtilis biofilms

2020 ◽  
Author(s):  
Natalia Cortes Osorio ◽  
Robert Endrika ◽  
Karsten Kalbitz ◽  
Cordula Vogel
Keyword(s):  
Bacillus Subtilis ◽  
Extracellular Polymeric Substances ◽  
High Vacuum ◽  
Chemical Properties ◽  
High Ratio ◽  
Natural Environments ◽  
Radial Expansion ◽  
Biofilm Growth ◽  
Microbial Cells ◽  
Biofilm Development

<p>In natural environments, bacteria can be found as multicellular communities exhibiting a high degree of structure, denominated biofilms. Biofilms are composed of microbial cells, often of multiple species, embedded within a matrix of extracellular polymeric substances (EPS). The exact composition, physical and chemical properties, and amounts of these components varies depending on their growth conditions. However, it remains unclear how nutrient availability drives the allocation into cell growth or EPS production, especially under conditions found in soils. Here we aimed to evaluate the effect of various C/N ratios on <em>Bacillus subtilis</em> biofilm growth (spatial expansion and structure) and their EPS composition. We hypothesized that the largest biofilm development and highest EPS production by <em>Bacillus subtilis</em> would be caused by a nutrient imbalance reflected in C/N ratios, especially high C availability. Biofilms were grown on membranes on MSgg agar plates with C/N ratios of 1:1, 10:1, 25:1 and 100:1. Several methods from macroscopic observations over EPS extraction and determination up to various microscopic visualisation techniques were used. The radial expansion of the biofilm was measured, followed by EPS extraction to quantify EPS-proteins and EPS-polysaccharides. Hydrated biofilm samples were studied regarding their biofilm structures by scanning electron microscopy (SEM) within the environmental mode at approximately 97% humidity. Fixed, dehydrated and embedded samples were used to evaluate the biofilm height and internal structure with SEM in high vacuum mode. Low C/N ratio (1:1) resulted in the smallest biofilms in terms of radial expansion and biofilm height, with densely packed layers of cells and low amounts of EPS. Our first results revealed that the highest biofilm productions were observed at C/N ratio of 10:1 and 25:1. The microscopic approaches indicated that biofilms growing at C/N ratios of 100:1 produced the highest amount of EPS. Furthermore, changes in the microscopical features of the biofilms were detected with different structures along the biofilm regions affected by the nutrient conditions. These results suggest that the C/N ratio has a large impact on the biofilm development and structure, with different allocations into microbial cells and EPS. Overall, the results obtained until now allowed us to accept the initial hypothesis, indicating that higher C/N ratios induce a higher EPS production. This suggests that environments containing a high ratio between carbon and the limiting nutrient, often nitrogen, may favour polysaccharide production, probably because energy from the carbon excess is used for polysaccharide biosynthesis.</p>

Antibiotics Application Strategies to Control Biofilm Formation in Pathogenic Bacteria

2020 ◽  
Vol 21 (4) ◽  
pp. 270-286 ◽  
Author(s):  
Fazlurrahman Khan ◽  
Dung T.N. Pham ◽  
Sandra F. Oloketuyi ◽  
Young-Mog Kim
Keyword(s):  
Biofilm Formation ◽  
Pathogenic Bacteria ◽  
Extracellular Polymeric Substances ◽  
Quorum Quenching ◽  
Resistance Mechanisms ◽  
Bacterial Biofilm ◽  
Bacterial Cells ◽  
High Concentration ◽  
Biofilm Inhibition ◽  
Abiotic Surfaces

Background: The establishment of a biofilm by most pathogenic bacteria has been known as one of the resistance mechanisms against antibiotics. A biofilm is a structural component where the bacterial community adheres to the biotic or abiotic surfaces by the help of Extracellular Polymeric Substances (EPS) produced by bacterial cells. The biofilm matrix possesses the ability to resist several adverse environmental factors, including the effect of antibiotics. Therefore, the resistance of bacterial biofilm-forming cells could be increased up to 1000 times than the planktonic cells, hence requiring a significantly high concentration of antibiotics for treatment. Methods: Up to the present, several methodologies employing antibiotics as an anti-biofilm, antivirulence or quorum quenching agent have been developed for biofilm inhibition and eradication of a pre-formed mature biofilm. Results: Among the anti-biofilm strategies being tested, the sub-minimal inhibitory concentration of several antibiotics either alone or in combination has been shown to inhibit biofilm formation and down-regulate the production of virulence factors. The combinatorial strategies include (1) combination of multiple antibiotics, (2) combination of antibiotics with non-antibiotic agents and (3) loading of antibiotics onto a carrier. Conclusion: The present review paper describes the role of several antibiotics as biofilm inhibitors and also the alternative strategies adopted for applications in eradicating and inhibiting the formation of biofilm by pathogenic bacteria.

scholarly journals Responses of the Pheromone-Binding Protein of the Silk Moth Bombyx mori on a Graphene Biosensor Match Binding Constants in Solution

Sensors ◽  
2021 ◽  
Vol 21 (2) ◽  
pp. 499
Author(s):  
Caroline Bonazza ◽  
Jiao Zhu ◽  
Roger Hasler ◽  
Rosa Mastrogiacomo ◽  
Paolo Pelosi ◽  
...  
Keyword(s):  
Bombyx Mori ◽  
Binding Protein ◽  
Binding Constants ◽  
Isoamyl Acetate ◽  
The Other ◽  
Oxide Surface ◽  
Binding Assays ◽  
Pheromone Binding Protein ◽  
Silk Moth ◽  
Good Agreement

An electronic biosensor for odors was assembled by immobilizing the silk moth Bombyx mori pheromone binding protein (BmorPBP1) on a reduced graphene oxide surface of a field-effect transistor. At physiological pH, the sensor detects the B. mori pheromones, bombykol and bombykal, with good affinity and specificity. Among the other odorants tested, only eugenol elicited a strong signal, while terpenoids and other odorants (linalool, geraniol, isoamyl acetate, and 2-isobutyl-3-methoxypyrazine) produced only very weak responses. Parallel binding assays were performed with the same protein and the same ligands, using the common fluorescence approach adopted for similar proteins. The results are in good agreement with the sensor’s responses: bombykol and bombykal, together with eugenol, proved to be strong ligands, while the other compounds showed only poor affinity. When tested at pH 4, the protein failed to bind bombykol both in solution and when immobilized on the sensor. This result further indicates that the BmorPBP1 retains its full activity when immobilized on a surface, including the conformational change observed in acidic conditions. The good agreement between fluorescence assays and sensor responses suggests that ligand-binding assays in solution can be used to screen mutants of a binding protein when selecting the best form to be immobilized on a biosensor.

scholarly journals Influence of biopolymers on the rheological properties of seafloor sediments and the runout behavior of submarine debris flows

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Jun Kameda ◽  
Hamada Yohei
Keyword(s):  
Rheological Properties ◽  
Debris Flows ◽  
Extracellular Polymeric Substances ◽  
Flow Behavior ◽  
Mass Movement ◽  
Rheological Parameters ◽  
Natural Environments ◽  
Natural Systems ◽  
Chemical Conditions ◽  
Seafloor Sediments

AbstractSubmarine debris flows are mass movement processes on the seafloor, and are geohazards for seafloor infrastructure such as pipelines, communication cables, and submarine structures. Understanding the generation and run-out behavior of submarine debris flows is thus critical for assessing the risk of such geohazards. The rheological properties of seafloor sediments are governed by factors including sediment composition, grain size, water content, and physico-chemical conditions. In addition, extracellular polymeric substances (EPS) generated by microorganisms can affect rheological properties in natural systems. Here we show that a small quantity of EPS (~ 0.1 wt%) can potentially increase slope stability and decrease the mobility of submarine debris flows by increasing the internal cohesion of seafloor sediment. Our experiments demonstrated that the flow behavior of sediment suspensions mixed with an analogue material of EPS (xanthan gum) can be described by a Herschel–Bulkley model, with the rheological parameters being modified progressively, but not monotonously, with increasing EPS content. Numerical modeling of debris flows demonstrated that the run-out distance markedly decreases if even 0.1 wt% of EPS is added. The addition of EPS can also enhance the resistivity of sediment to fluidization triggered by cyclic loading, by means of formation of an EPS network that binds sediment particles. These findings suggest that the presence of EPS in natural environments reduces the likelihood of submarine geohazards.

scholarly journals Can exaggerated response to a GH provocative test identify patients with partial GH insensitivity syndrome?

2002 ◽  
pp. 319-323 ◽  
Author(s):  
Y Rakover ◽  
A Silbergeld ◽  
I Lavi ◽  
R Masalha ◽  
IB Shlomo
Keyword(s):  
Short Stature ◽  
Binding Protein ◽  
Standard Deviation Score ◽  
Bone Age ◽  
The Other ◽  
Provocative Test ◽  
Igf I ◽  
Parental Height ◽  
The Difference ◽  
Igfbp 3

OBJECTIVES: In the majority of children with short stature, the etiology is unknown. Mutations of the GH receptor (GHR) have been reported in a few children with apparent idiopathic short stature (ISS). These patients had low IGF-I, IGF-binding protein-3 (IGFBP-3) and GH-binding protein (GHBP), but a normal or exaggerated GH response to provocative stimuli, suggestive of partial GH insensitivity (GHI). We attempted to identify children with partial GHI syndrome, based on their response to GH provocative stimuli and other parameters of the GH-IGF-I axis. SUBJECTS AND METHODS: One hundred and sixty-four pre-pubertal children (97 boys, 67 girls) aged 7.2 (0.5-16.75) years were studied. All had short stature with height <3rd centile. The weight, bone age (BA) and body mass index (BMI) of the subjects, as well as the parents' heights and mid parental height (MPH) were assessed. Basal blood samples were taken for IGF-I, IGFBP-3 and GHBP. All subjects underwent a GH provocative test with either clonidine, arginine or insulin. The subjects were divided into three groups: (A) patients with peak GH concentration <18 mIU/l in two different provocative tests (GH deficiency - GHD, n=33); (B) patients with peak GH between 18.2 and 39.8 mIU/l (normal response, n=78); (C) patients with peak GH >40 mIU/l (exaggerated GH response, n=53). RESULTS: No significant differences were found in age, height (standard deviation score (SDS)), parental height (SDS) and the difference between chronological age and bone age (DeltaBA) between the groups. Patients with GHD were heavier (P=0.039) and had significantly higher BMI (SDS) (P=0.001) than the other groups. MPH (SDS) was lower in the group of exaggerated responders (P=0.04) compared with the other groups. No significant differences were found between the groups for the biochemical parameters when expressed nominally or in SDS, except for IGFBP-3 (SDS), which was lower in the GHD group (P=0.005). The GHBP levels were not lower in the group of exaggerated GH response to provocative stimuli. Height (SDS) correlated negatively with basal GH values in pooled data of all the subjects (r=-0.358, P<0.0001), in normal responders (r=-0.45, P<0.0001) and in the exaggerated responders (r=-0.341, P<0.0001), but not in the GHD group. CONCLUSION: Exaggerated GH response to provocative tests alone does not appear to be useful in identifying children with GHI.

Archaeal biofilms: widespread and complex

2013 ◽  
Vol 41 (1) ◽  
pp. 393-398 ◽  
Author(s):  
Sabrina Fröls
Keyword(s):  
Biofilm Formation ◽  
Extracellular Polymeric Substances ◽  
Bacterial Species ◽  
Surface Adhesion ◽  
Form Complex ◽  
Abiotic Surfaces ◽  
Archaeal Species ◽  
Physical And Chemical ◽  
Insight Into ◽  
Mixed Communities

Biofilms or multicellular structures become accepted as the dominant microbial lifestyle in Nature, but in the past they were only studied extensively in bacteria. Investigations on archaeal monospecies cultures have shown that many archaeal species are able to adhere on biotic and abiotic surfaces and form complex biofilm structures. Biofilm-forming archaea were identified in a broad range of extreme and moderate environments. Natural biofilms observed are mostly mixed communities composed of archaeal and bacterial species of various abundances. The physiological functions of the archaea identified in such mixed communities suggest a significant impact on the biochemical cycles maintaining the flow and recycling of the nutrients on earth. Therefore it is of high interest to investigate the characteristics and mechanisms underlying the archaeal biofilm formation. In the present review, I summarize and discuss the present investigations of biofilm-forming archaeal species, i.e. their diverse biofilm architectures in monospecies or mixed communities, the identified EPSs (extracellular polymeric substances), archaeal structures mediating surface adhesion or cell–cell connections, and the response to physical and chemical stressors implying that archaeal biofilm formation is an adaptive reaction to changing environmental conditions. A first insight into the molecular differentiation of cells within archaeal biofilms is given.

Characteristics of a somatostatin-binding protein

1978 ◽  
Vol 56 (1) ◽  
pp. 48-53 ◽  
Author(s):  
N. Ogawa ◽  
T. Thompson ◽  
H. G. Friesen
Keyword(s):  
Diabetes Mellitus ◽  
Binding Protein ◽  
Gel Filtration ◽  
The Other ◽  
Rat Tissues ◽  
Cytoplasmic Protein ◽  
Disulfide Bridges ◽  
Thiol Groups ◽  
Tissue Extracts ◽  
Streptozotocin Induced Diabetes

The concentrations of a somatostatin-binding protein, found in the cytosol of a number of rat tissues, are similar in both sexes, and hypophysectomy has little or no effect on the level of binding protein in tissue extracts. On the other hand, streptozotocin-induced diabetes mellitus causes a modest decrease. The somatostatin-binding proteins obtained from extracts of several rat tissues are not only similar in molecular weight but also exhibit a similar isoelectric point and electrophoretic mobility. Agents that block thiol groups or prevent the formation of disulfide bridges markedly decrease the binding of somatostatin to the cytoplasmic protein. Studies using thiol reagents and gel filtration suggest that free thiol groups in somatostatin-binding protein are important for the binding of somatostatin.

THE KILLER OF NATURE – ENVIRONMENTAL DEGRADATION

2015 ◽  
Vol 3 (3) ◽  
pp. 293-295
Author(s):  
Ekta Sharma
Keyword(s):  
Environmental Degradation ◽  
Environmental Conditions ◽  
The Other ◽  
Natural Environments ◽  
Human Being ◽  
Human Beings ◽  
The Public ◽  
Summary Paper ◽  
Living Being

The Presented summary paper target is to draw the attention of the public to the benefits of Environment and how we are connected to the Environment. To show that if there’s any change in the Environmental conditions, then how the conditions change in human beings lives. Living Being, whether a Human Being or Animals or plants,  are all directly or indirectly Dependent on the Environment for their Survival. When asked truly it can be said that none of the living being can survive without the presence of Environment. It is difficult to find absolutely natural environments, and it is common that the naturalness varies in a continuum, from ideally 100% natural in one extreme to 0% natural in the other. More precisely, we can consider the different aspects or components of an environment, and see that their degree of naturalness is not uniform.

scholarly journals The Figure of Distrust: Prince A.S. Menshikov in the Maritime Department during the Period of Reforms, 1826–1828

2020 ◽  
Vol 4 (3) ◽  
pp. 702-733
Author(s):  
Kseniya V. Donik
Keyword(s):  
Methodological Approach ◽  
The Other ◽  
General Situation ◽  
Functional Characteristics ◽  
Problem Context ◽  
Agent Based ◽  
The One ◽  
First Time ◽  
Official Records

The article considers the role of Prince A. Menshikov as a specific type of agent of supreme authority in the process of reforming the maritime administration. The problem context of reforms resulted from the involvement of the naval generals and officials in abuses, which was a consequence of nepotism and unrest in the navy. The involvement of sailors in the Decembrist revolt significantly affected the attitude of the tsar to the general situation in the naval environment. Distrustful of the existing naval administration, Nicholas I needed an intermediary who would implement his idea of the arrangement of the navy on the one hand, and provide him with an objective “impartial” account of maritime problems, on the other hand. As a result of that, Adjutant General Prince A. Menshikov, who had had nothing to do with the naval service earlier, joined the navy to become the monarch’s agent in charge of the naval issues in the bodies of autocratic authority. The objective of the article is to identify the functions of such an agent based on the example of the Maritime Department. The sources of the article include official records and personal documents, some of which are introduced into scientific circulation for the first time. The principal methodological approach to the problem under study is an attempt to bring the appointment of Menshikov beyond the scope of narrow departmental history which was based on the unmotivated decision of the emperor and to propose an interpretation of the events in the context of tsarist government via agents, which has already been described in historiography. The author makes a conclusion about the interconnection between the crisis in the naval department, the attitude of the supreme authority towards it, and the appearance of the monarch’s agent with a number of his own functional characteristics.

Introduction

2017 ◽  
Author(s):  
David M. Kaplan
Keyword(s):  
Climate Change ◽  
Environmental Impacts ◽  
Philosophy Of Technology ◽  
Environmental Issues ◽  
Environmental Philosophy ◽  
The Other ◽  
Natural Environments ◽  
The World ◽  
The Difference ◽  
Two Sides

Environmental philosophy and philosophy of technology have a lot in common. Both fields explore the positive and negative aspects of human modifications of the world. Both question the limits of technology in relation to natural environments, animals, plants, and food. Both examine if human making and doing is compatible with nature or wholly different from it. And both examine the difference between what is considered to be natural and artificial. Technology and the environment further intersect in a number of issues, such as climate change, sustainability, geo-engineering, and agriculture. The reason for the overlap is fundamental: Environmental issues inevitably involve technology, and technologies inevitably have environmental impacts. Technology and the environment are like two sides of the same coin: Each is fully understood only in relation to the other. Yet, despite the ample overlap of questions concerning technology and the environment, the two philosophical fields have developed in relative isolation from each other. Even when philosophers in each field address themselves to similar concerns, the research tends to be parallel rather than intersecting, and the literatures remain foreign to one another. These divergent paths are unfortunate. Philosophers from each field have a lot to contribute to the other....

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