scholarly journals An Interpretable Machine Learning Method for the Detection of Schizophrenia Using EEG Signals

2021 ◽  
Vol 15 ◽  
Author(s):  
Manuel A. Vázquez ◽  
Arash Maghsoudi ◽  
Inés P. Mariño
Keyword(s):  
Machine Learning ◽  
Computational Algorithm ◽  
Real Data ◽  
Partial Directed Coherence ◽  
Eeg Signals ◽  
Directed Transfer Function ◽  
Frequency Bands ◽  
Additional Information ◽  
Theta Frequency ◽  
Generalized Partial Directed Coherence

In this work we propose a machine learning (ML) method to aid in the diagnosis of schizophrenia using electroencephalograms (EEGs) as input data. The computational algorithm not only yields a proposal of diagnostic but, even more importantly, it provides additional information that admits clinical interpretation. It is based on an ML model called random forest that operates on connectivity metrics extracted from the EEG signals. Specifically, we use measures of generalized partial directed coherence (GPDC) and direct directed transfer function (dDTF) to construct the input features to the ML model. The latter allows the identification of the most performance-wise relevant features which, in turn, provide some insights about EEG signals and frequency bands that are associated with schizophrenia. Our preliminary results on real data show that signals associated with the occipital region seem to play a significant role in the diagnosis of the disease. Moreover, although every frequency band might yield useful information for the diagnosis, the beta and theta (frequency) bands provide features that are ultimately more relevant for the ML classifier that we have implemented.

scholarly journals Classification of Brainwaves for Sleep Stages by High-Dimensional FFT Features from EEG Signals

2020 ◽  
Vol 10 (5) ◽  
pp. 1797 ◽  
Author(s):  
Mera Kartika Delimayanti ◽  
Bedy Purnama ◽  
Ngoc Giang Nguyen ◽  
Mohammad Reza Faisal ◽  
Kunti Robiatul Mahmudah ◽  
...  
Keyword(s):  
Machine Learning ◽  
Sleep Stage ◽  
Machine Learning Algorithms ◽  
High Dimensional ◽  
Sleep Stages ◽  
Eeg Signals ◽  
Stage Classification ◽  
Sleep Stage Classification ◽  
Low Dimensional

Manual classification of sleep stage is a time-consuming but necessary step in the diagnosis and treatment of sleep disorders, and its automation has been an area of active study. The previous works have shown that low dimensional fast Fourier transform (FFT) features and many machine learning algorithms have been applied. In this paper, we demonstrate utilization of features extracted from EEG signals via FFT to improve the performance of automated sleep stage classification through machine learning methods. Unlike previous works using FFT, we incorporated thousands of FFT features in order to classify the sleep stages into 2–6 classes. Using the expanded version of Sleep-EDF dataset with 61 recordings, our method outperformed other state-of-the art methods. This result indicates that high dimensional FFT features in combination with a simple feature selection is effective for the improvement of automated sleep stage classification.

scholarly journals ALPINE: Active Link Prediction Using Network Embedding

2021 ◽  
Vol 11 (11) ◽  
pp. 5043
Author(s):  
Xi Chen ◽  
Bo Kang ◽  
Jefrey Lijffijt ◽  
Tijl De Bie
Keyword(s):  
Active Learning ◽  
Protein Interactions ◽  
Link Prediction ◽  
Prediction Accuracy ◽  
Real Data ◽  
Network Embedding ◽  
Protein Protein Interactions ◽  
Additional Information ◽  
The Cost ◽  
Active Link

Many real-world problems can be formalized as predicting links in a partially observed network. Examples include Facebook friendship suggestions, the prediction of protein–protein interactions, and the identification of hidden relationships in a crime network. Several link prediction algorithms, notably those recently introduced using network embedding, are capable of doing this by just relying on the observed part of the network. Often, whether two nodes are linked can be queried, albeit at a substantial cost (e.g., by questionnaires, wet lab experiments, or undercover work). Such additional information can improve the link prediction accuracy, but owing to the cost, the queries must be made with due consideration. Thus, we argue that an active learning approach is of great potential interest and developed ALPINE (Active Link Prediction usIng Network Embedding), a framework that identifies the most useful link status by estimating the improvement in link prediction accuracy to be gained by querying it. We proposed several query strategies for use in combination with ALPINE, inspired by the optimal experimental design and active learning literature. Experimental results on real data not only showed that ALPINE was scalable and boosted link prediction accuracy with far fewer queries, but also shed light on the relative merits of the strategies, providing actionable guidance for practitioners.

scholarly journals Eye-blink artifact removal from single channel EEG with k-means and SSA

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Ajay Kumar Maddirala ◽  
Kalyana C Veluvolu
Keyword(s):  
Machine Learning ◽  
Single Channel ◽  
Learning Algorithm ◽  
Singular Spectrum Analysis ◽  
Machine Learning Algorithm ◽  
Eeg Signal ◽  
Eeg Signals ◽  
Unsupervised Machine Learning ◽  
Eye Blink ◽  
Blink Artifact

AbstractIn recent years, the usage of portable electroencephalogram (EEG) devices are becoming popular for both clinical and non-clinical applications. In order to provide more comfort to the subject and measure the EEG signals for several hours, these devices usually consists of fewer EEG channels or even with a single EEG channel. However, electrooculogram (EOG) signal, also known as eye-blink artifact, produced by involuntary movement of eyelids, always contaminate the EEG signals. Very few techniques are available to remove these artifacts from single channel EEG and most of these techniques modify the uncontaminated regions of the EEG signal. In this paper, we developed a new framework that combines unsupervised machine learning algorithm (k-means) and singular spectrum analysis (SSA) technique to remove eye blink artifact without modifying actual EEG signal. The novelty of the work lies in the extraction of the eye-blink artifact based on the time-domain features of the EEG signal and the unsupervised machine learning algorithm. The extracted eye-blink artifact is further processed by the SSA method and finally subtracted from the contaminated single channel EEG signal to obtain the corrected EEG signal. Results with synthetic and real EEG signals demonstrate the superiority of the proposed method over the existing methods. Moreover, the frequency based measures [the power spectrum ratio ($$\Gamma $$ Γ ) and the mean absolute error (MAE)] also show that the proposed method does not modify the uncontaminated regions of the EEG signal while removing the eye-blink artifact.

scholarly journals Machine Learning for the Dynamic Positioning of UAVs for Extended Connectivity

Sensors ◽  
2021 ◽  
Vol 21 (13) ◽  
pp. 4618
Author(s):  
Francisco Oliveira ◽  
Miguel Luís ◽  
Susana Sargento
Keyword(s):  
Machine Learning ◽  
Cellular Networks ◽  
Real Data ◽  
Emerging Technology ◽  
Machine Learning Algorithms ◽  
Base Stations ◽  
Aerial Vehicle ◽  
Positioning Algorithm ◽  
The Military ◽  
Better Than

Unmanned Aerial Vehicle (UAV) networks are an emerging technology, useful not only for the military, but also for public and civil purposes. Their versatility provides advantages in situations where an existing network cannot support all requirements of its users, either because of an exceptionally big number of users, or because of the failure of one or more ground base stations. Networks of UAVs can reinforce these cellular networks where needed, redirecting the traffic to available ground stations. Using machine learning algorithms to predict overloaded traffic areas, we propose a UAV positioning algorithm responsible for determining suitable positions for the UAVs, with the objective of a more balanced redistribution of traffic, to avoid saturated base stations and decrease the number of users without a connection. The tests performed with real data of user connections through base stations show that, in less restrictive network conditions, the algorithm to dynamically place the UAVs performs significantly better than in more restrictive conditions, reducing significantly the number of users without a connection. We also conclude that the accuracy of the prediction is a very important factor, not only in the reduction of users without a connection, but also on the number of UAVs deployed.

scholarly journals Functional prediction of environmental variables using metabolic networks

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Adèle Weber Zendrera ◽  
Nataliya Sokolovska ◽  
Hédi A. Soula
Keyword(s):  
Machine Learning ◽  
Growth Temperature ◽  
Environmental Variables ◽  
Metabolic Networks ◽  
Machine Learning Techniques ◽  
Underlying Structure ◽  
Glutathione Biosynthesis ◽  
Additional Information ◽  
Cold Environments ◽  
Novel Approach

AbstractIn this manuscript, we propose a novel approach to assess relationships between environment and metabolic networks. We used a comprehensive dataset of more than 5000 prokaryotic species from which we derived the metabolic networks. We compute the scope from the reconstructed graphs, which is the set of all metabolites and reactions that can potentially be synthesized when provided with external metabolites. We show using machine learning techniques that the scope is an excellent predictor of taxonomic and environmental variables, namely growth temperature, oxygen tolerance, and habitat. In the literature, metabolites and pathways are rarely used to discriminate species. We make use of the scope underlying structure—metabolites and pathways—to construct the predictive models, giving additional information on the important metabolic pathways needed to discriminate the species, which is often absent in other metabolic network properties. For example, in the particular case of growth temperature, glutathione biosynthesis pathways are specific to species growing in cold environments, whereas tungsten metabolism is specific to species in warm environments, as was hinted in current literature. From a machine learning perspective, the scope is able to reduce the dimension of our data, and can thus be considered as an interpretable graph embedding.

Application of a Rough Set-Based Inductive Learning System

1993 ◽  
Vol 18 (2-4) ◽  
pp. 209-220
Author(s):  
Michael Hadjimichael ◽  
Anita Wasilewska
Keyword(s):  
Machine Learning ◽  
Rough Set ◽  
Presidential Election ◽  
Predictive Accuracy ◽  
Learning Algorithm ◽  
Inductive Learning ◽  
Real Data ◽  
Semantic Content ◽  
Learning System ◽  
Voter Preferences

We present here an application of Rough Set formalism to Machine Learning. The resulting Inductive Learning algorithm is described, and its application to a set of real data is examined. The data consists of a survey of voter preferences taken during the 1988 presidential election in the U.S.A. Results include an analysis of the predictive accuracy of the generated rules, and an analysis of the semantic content of the rules.

scholarly journals Kernel Based Data-Adaptive Support Vector Machines for Multi-Class Classification

Mathematics ◽  
2021 ◽  
Vol 9 (9) ◽  
pp. 936
Author(s):  
Jianli Shao ◽  
Xin Liu ◽  
Wenqing He
Keyword(s):  
Machine Learning ◽  
Spatial Association ◽  
Class Imbalance ◽  
Imbalanced Data ◽  
Real Data ◽  
Kernel Functions ◽  
Support Vector ◽  
Classification Problems ◽  
Rare Class ◽  
Data Adaptive

Imbalanced data exist in many classification problems. The classification of imbalanced data has remarkable challenges in machine learning. The support vector machine (SVM) and its variants are popularly used in machine learning among different classifiers thanks to their flexibility and interpretability. However, the performance of SVMs is impacted when the data are imbalanced, which is a typical data structure in the multi-category classification problem. In this paper, we employ the data-adaptive SVM with scaled kernel functions to classify instances for a multi-class population. We propose a multi-class data-dependent kernel function for the SVM by considering class imbalance and the spatial association among instances so that the classification accuracy is enhanced. Simulation studies demonstrate the superb performance of the proposed method, and a real multi-class prostate cancer image dataset is employed as an illustration. Not only does the proposed method outperform the competitor methods in terms of the commonly used accuracy measures such as the F-score and G-means, but also successfully detects more than 60% of instances from the rare class in the real data, while the competitors can only detect less than 20% of the rare class instances. The proposed method will benefit other scientific research fields, such as multiple region boundary detection.

scholarly journals Affective Computing on Machine Learning-Based Emotion Recognition Using a Self-Made EEG Device

Sensors ◽  
2021 ◽  
Vol 21 (15) ◽  
pp. 5135
Author(s):  
Ngoc-Dau Mai ◽  
Boon-Giin Lee ◽  
Wan-Young Chung
Keyword(s):  
Machine Learning ◽  
Emotion Recognition ◽  
Temporal Lobe ◽  
Affective Computing ◽  
Electrode Placement ◽  
Entropy Measure ◽  
Support Vector ◽  
Emotion Classification ◽  
Eeg Signals ◽  
Computing Method

In this research, we develop an affective computing method based on machine learning for emotion recognition using a wireless protocol and a wearable electroencephalography (EEG) custom-designed device. The system collects EEG signals using an eight-electrode placement on the scalp; two of these electrodes were placed in the frontal lobe, and the other six electrodes were placed in the temporal lobe. We performed experiments on eight subjects while they watched emotive videos. Six entropy measures were employed for extracting suitable features from the EEG signals. Next, we evaluated our proposed models using three popular classifiers: a support vector machine (SVM), multi-layer perceptron (MLP), and one-dimensional convolutional neural network (1D-CNN) for emotion classification; both subject-dependent and subject-independent strategies were used. Our experiment results showed that the highest average accuracies achieved in the subject-dependent and subject-independent cases were 85.81% and 78.52%, respectively; these accuracies were achieved using a combination of the sample entropy measure and 1D-CNN. Moreover, our study investigates the T8 position (above the right ear) in the temporal lobe as the most critical channel among the proposed measurement positions for emotion classification through electrode selection. Our results prove the feasibility and efficiency of our proposed EEG-based affective computing method for emotion recognition in real-world applications.

scholarly journals Validating Deep Neural Networks for Online Decoding of Motor Imagery Movements from EEG Signals

Sensors ◽  
2019 ◽  
Vol 19 (1) ◽  
pp. 210 ◽  
Author(s):  
Zied Tayeb ◽  
Juri Fedjaev ◽  
Nejla Ghaboosi ◽  
Christoph Richter ◽  
Lukas Everding ◽  
...  
Keyword(s):  
Neural Network ◽  
Machine Learning ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Motor Imagery ◽  
Classification Performance ◽  
Feature Engineering ◽  
Learning Models ◽  
Eeg Signals ◽  
Learning Methods

Non-invasive, electroencephalography (EEG)-based brain-computer interfaces (BCIs) on motor imagery movements translate the subject’s motor intention into control signals through classifying the EEG patterns caused by different imagination tasks, e.g., hand movements. This type of BCI has been widely studied and used as an alternative mode of communication and environmental control for disabled patients, such as those suffering from a brainstem stroke or a spinal cord injury (SCI). Notwithstanding the success of traditional machine learning methods in classifying EEG signals, these methods still rely on hand-crafted features. The extraction of such features is a difficult task due to the high non-stationarity of EEG signals, which is a major cause by the stagnating progress in classification performance. Remarkable advances in deep learning methods allow end-to-end learning without any feature engineering, which could benefit BCI motor imagery applications. We developed three deep learning models: (1) A long short-term memory (LSTM); (2) a spectrogram-based convolutional neural network model (CNN); and (3) a recurrent convolutional neural network (RCNN), for decoding motor imagery movements directly from raw EEG signals without (any manual) feature engineering. Results were evaluated on our own publicly available, EEG data collected from 20 subjects and on an existing dataset known as 2b EEG dataset from “BCI Competition IV”. Overall, better classification performance was achieved with deep learning models compared to state-of-the art machine learning techniques, which could chart a route ahead for developing new robust techniques for EEG signal decoding. We underpin this point by demonstrating the successful real-time control of a robotic arm using our CNN based BCI.

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