scholarly journals Next-Generation Proteomics Reveals a Greater Antioxidative Response to Drought in Coffea arabica Than in Coffea canephora

Agronomy ◽  
2022 ◽  
Vol 12 (1) ◽  
pp. 148
Author(s):  
Isabel Marques ◽  
Duarte Gouveia ◽  
Jean-Charles Gaillard ◽  
Sónia Martins ◽  
Magda C. Semedo ◽  
...  
Keyword(s):  
Coffea Arabica ◽  
Shotgun Proteomics ◽  
Coffea Canephora ◽  
Label Free ◽  
Major Threat ◽  
The Core ◽  
Antioxidative Response ◽  
Core Proteome ◽  
Proteomic Response ◽  
The Impact

Drought is a major threat to coffee, compromising the quality and quantity of its production. We have analyzed the core proteome of 18 Coffea canephora cv. Conilon Clone 153 and C. arabica cv. Icatu plants and assessed their responses to moderate (MWD) and severe (SWD) water deficits. Label-free quantitative shotgun proteomics identified 3000 proteins in both genotypes, but less than 0.8% contributed to ca. 20% of proteome biomass. Proteomic changes were dependent on the severity of drought, being stronger under SWD and with an enrolment of different proteins, functions, and pathways than under MWD. The two genotypes displayed stress-responsive proteins under SWD, but only C. arabica showed a higher abundance of proteins involved in antioxidant detoxification activities. Overall, the impact of MWD was minor in the two genotypes, contrary to previous studies. In contrast, an extensive proteomic response was found under SWD, with C. arabica having a greater potential for acclimation/resilience than C. canephora. This is likely supported by a wider antioxidative response and an ability to repair photosynthetic structures, being crucial to develop new elite genotypes that assure coffee supply under water scarcity levels.

scholarly journals PSVII-9 Post transcriptional modifications may lead to changes in newborn goats’ skeletal muscle proteome as a consequence of maternal feed restriction at different stages of gestation

2020 ◽  
Vol 98 (Supplement_3) ◽  
pp. 167-168
Author(s):  
Thaís Costa ◽  
Tiago Mendes ◽  
Felipe Moura ◽  
Ranyeri Souza ◽  
Marta Fontes ◽  
...  
Keyword(s):  
Skeletal Muscle ◽  
Protein Extraction ◽  
Muscle Metabolism ◽  
Shotgun Proteomics ◽  
Nucleotide Metabolism ◽  
Feed Restriction ◽  
Label Free ◽  
Citrate Cycle ◽  
Maintenance Requirement ◽  
The Impact

Abstract We aimed to investigate the impact of maternal feed restriction at different stages of gestation on proteomic profile in the skeletal muscle of newborn goats. A total of 14 pregnant dams were randomly divided into one of the follow dietary treatments: Animals fed at 50% of maintenance requirement from 8-84 d of gestation and then fed at 100% maintenance requirement from day 85 of gestation to parturition (RM, n = 6), and animals fed at 100% of maintenance requirement from 8-84 d of gestation and then fed at 50% maintenance requirement from day 85 of gestation to parturition (MR, n = 8). Longissimus muscle was sampled from male newborn goats and submitted to sarcoplasmic protein extraction and liquid chromatography coupled to mass spectrometry (LC-MS) analysis. The raw data were processed with MaxQuant (1.6.3.3) software with parameters set to default values. Label-free quantification (LFQ) was added and only protein ratios calculated from at least two unique peptides were considered. Our data showed 3 differentially expressed proteins down-regulated in RM (q-value < 0.05). Additionally, we observed proteins present exclusively in each treatment (RM= 137 proteins; MR= 41 proteins). The overall enriched pathways in RM newborn goats are associated with glycolysis (PKM), NADPH synthesis (PGD), lipid oxidation (ECHS1, ACAT1) and citrate cycle (ACO1, OGDH). While the overall enriched pathways in MR newborn goats are associated with glycolysis/gluconeogenesis (GAPDH, ENO) and citrate cycle (PDHA, IDH3A). In addition, correlation analysis between shotgun proteomics and RNAseq data from the same samples showed that there were no relationships between proteins and transcripts observed. These results indicate that maternal feed restriction during different stages of gestation alters enzymes and protein domains abundance associated with nucleotide metabolism in the skeletal muscle of newborn goats. Moreover, the lack of correlation between protein-transcript suggests the importance of post-transcriptional regulation of skeletal muscle metabolism as a consequence of maternal feed restriction at different stages of gestation.

Evaluating the impact of methionine-enriched diets in the liver of European seabass through label-free shotgun proteomics

2021 ◽  
Vol 232 ◽  
pp. 104047 ◽  
Author(s):  
Ana Paula Farinha ◽  
Denise Schrama ◽  
Tomé Silva ◽  
Luís E.C. Conceição ◽  
Rita Colen ◽  
...  
Keyword(s):  
Shotgun Proteomics ◽  
Label Free ◽  
European Seabass ◽  
The Impact

Soziale Disziplinierung im flexiblen Kapitalismus

2004 ◽  
Vol 34 (136) ◽  
pp. 339-356
Author(s):  
Tobias Wölfle ◽  
Oliver Schöller
Keyword(s):  
Social Welfare ◽  
Second Step ◽  
Social Rights ◽  
Federal Law ◽  
Capitalist Development ◽  
The Core ◽  
The Past ◽  
The Impact ◽  
Municipal Level

Under the term “Hilfe zur Arbeit” (aid for work) the federal law of social welfare subsumes all kinds of labour disciplining instruments. First, the paper shows the historical connection of welfare and labour disciplining mechanisms in the context of different periods within capitalist development. In a second step, against the background of historical experiences, we will analyse the trends of “Hilfe zur Arbeit” during the past two decades. It will be shown that by the rise of unemployment, the impact of labour disciplining aspects of “Hilfe zur Arbeit” has increased both on the federal and on the municipal level. For this reason the leverage of the liberal paradigm would take place even in the core of social rights.

Citizen Deliberation Online

2019 ◽  
pp. 689-712
Author(s):  
Patrícia Rossini ◽  
Jennifer Stromer-Galley
Keyword(s):  
Political Engagement ◽  
Future Research ◽  
The Internet ◽  
Digital Platforms ◽  
The Core ◽  
Political Conversation ◽  
Political Talk ◽  
Citizen Deliberation ◽  
The Impact

Political conversation is at the heart of democratic societies, and it is an important precursor of political engagement. As society has become intertwined with the communication infrastructure of the Internet, we need to understand its uses and the implications of those uses for democracy. This chapter provides an overview of the core topics of scholarly concern around online citizen deliberation, focusing on three key areas of research: the standards of quality of communication and the normative stance on citizen deliberation online; the impact and importance of digital platforms in structuring political talk; and the differences between formal and informal political talk spaces. After providing a critical review of these three major areas of research, we outline directions for future research on online citizen deliberation.

scholarly journals The Role of Surface Chemistry in the Efficacy of Protein and DNA Microarrays for Label-Free Detection: An Overview

Polymers ◽  
2021 ◽  
Vol 13 (7) ◽  
pp. 1026
Author(s):  
Elisa Chiodi ◽  
Allison M. Marn ◽  
Matthew T. Geib ◽  
M. Selim Ünlü
Keyword(s):  
Surface Chemistry ◽  
Surface Functionalization ◽  
Dna Microarrays ◽  
Label Free ◽  
Polymeric Coatings ◽  
Label Free Detection ◽  
Particle Imaging ◽  
Single Particle Imaging ◽  
The Impact

The importance of microarrays in diagnostics and medicine has drastically increased in the last few years. Nevertheless, the efficiency of a microarray-based assay intrinsically depends on the density and functionality of the biorecognition elements immobilized onto each sensor spot. Recently, researchers have put effort into developing new functionalization strategies and technologies which provide efficient immobilization and stability of any sort of molecule. Here, we present an overview of the most widely used methods of surface functionalization of microarray substrates, as well as the most recent advances in the field, and compare their performance in terms of optimal immobilization of the bioreceptor molecules. We focus on label-free microarrays and, in particular, we aim to describe the impact of surface chemistry on two types of microarray-based sensors: microarrays for single particle imaging and for label-free measurements of binding kinetics. Both protein and DNA microarrays are taken into consideration, and the effect of different polymeric coatings on the molecules’ functionalities is critically analyzed.

Static and dynamic response of sandwich beams with lattice and pantographic cores

2021 ◽  
pp. 109963622110338
Author(s):  
Yury Solyaev ◽  
Arseniy Babaytsev ◽  
Anastasia Ustenko ◽  
Andrey Ripetskiy ◽  
Alexander Volkov
Keyword(s):  
Mechanical Performance ◽  
Lattice Structure ◽  
Unit Length ◽  
Experimental Tests ◽  
Plane Geometry ◽  
Sandwich Beams ◽  
Static Tests ◽  
Three Point Bending ◽  
The Core ◽  
The Impact

Mechanical performance of 3d-printed polyamide sandwich beams with different type of the lattice cores is investigated. Four variants of the beams are considered, which differ in the type of connections between the elements in the lattice structure of the core. We consider the pantographic-type lattices formed by the two families of inclined beams placed with small offset and connected by stiff joints (variant 1), by hinges (variant 2) and made without joints (variant 3). The fourth type of the core has the standard plane geometry formed by the intersected beams lying in the same plane (variant 4). Experimental tests were performed for the localized indentation loading according to the three-point bending scheme with small span-to-thickness ratio. From the experiments we found that the plane geometry of variant 4 has the highest rigidity and the highest load bearing capacity in the static tests. However, other three variants of the pantographic-type cores (1–3) demonstrate the better performance under the impact loading. The impact strength of such structures are in 3.5–5 times higher than those one of variant 4 with almost the same mass per unit length. This result is validated by using numerical simulations and explained by the decrease of the stress concentration and the stress state triaxiality and also by the delocalization effects that arise in the pantographic-type cores.

Comparative crosstalk performance analysis of different configurations of heterogeneous multicore fiber

2020 ◽  
Vol 0 (0) ◽  
Author(s):  
Umar Farooque ◽  
Rakesh Ranjan
Keyword(s):  
Refractive Index ◽  
Mode Coupling ◽  
The Other ◽  
Heterogeneous Multicore ◽  
Coupled Mode ◽  
The Core ◽  
Bending Radius ◽  
Multicore Fiber ◽  
The Impact ◽  
Core Pitch

AbstractIn order to select the heterogeneous multicore fiber (MCF) configuration with ultra-low crosstalk and low peak bending radius, comparative crosstalk analysis have been done for the three possible core configurations, namely, Configuration 1 - different refractive index (R.I.) and different radius, Configuration 2 - different R.I., and Configuration 3 - different radius. Using the coupled mode equation and the simplified expressions of mode coupling coefficient (MCC) for different configurations of heterogeneous cores, the crosstalk performance of all the heterogeneous MCF configurations along with the homogeneous MCF have been investigated analytically with respect to core pitch (D) and fiber bending radius (${R}_{b}$). Further, these expressions of MCC have been extended to obtain the simplified expressions of MCC for the estimation of crosstalk levels in respective trench-assisted (TA) heterogeneous MCF configurations. It is observed from the analysis that in Configuration 1, crosstalk level is lowest and the rate of decrease in the crosstalk with respect to the core pitch is highest compared to the other configurations of heterogeneous MCF. The values of crosstalk obtained analytically have been validated by comparing it with the values obtained from finite element method (FEM) based numerical simulation results. Further, we have investigated the impact of a fixed percent change (5%) in the core parameters (radius and/or R.I.) of one of the core of a homogeneous MCF, to realize the different heterogeneous MCF configurations, on the variations in crosstalk levels, difference in the mode effective refractive index of the core 1 and core 2 ($\Delta {n}_{eff}={n}_{eff1}-{n}_{eff2}$), and the peak bending radius (${R}_{pk}$). For the same percent variations (5%) in the core parameters (radius and/or R.I.) of different configurations of cores (Config. 1-Config. 3), Config. 1 MCF has highest variation in $\Delta {n}_{eff}$ value compared to other configurations of MCF. Further, this highest variation in $\Delta {n}_{eff}$ value of Config. 1 MCF results in smallest peak bending radius. The smaller value of peak bending radius allows MCF to bend into smaller radius. Therefore, Configuration 1 is the potential choice for the design of MCF with smaller peak bending radius and ultra-low crosstalk level compared to the other configurations of SI-heterogeneous MCF.

scholarly journals Do Microplastics Enter Our Food Chain Via Root Vegetables? A Raman Based Spectroscopic Study on Raphanus sativus

Materials ◽  
2021 ◽  
Vol 14 (9) ◽  
pp. 2329
Author(s):  
Leda-Eleni Tympa ◽  
Klytaimnistra Katsara ◽  
Panagiotis N. Moschou ◽  
George Kenanakis ◽  
Vassilis M. Papadakis
Keyword(s):  
Raphanus Sativus ◽  
Acrylonitrile Butadiene Styrene ◽  
Terrestrial Ecosystems ◽  
Label Free ◽  
Plastic Pollution ◽  
Potential Threat ◽  
Safety Studies ◽  
Widespread Phenomenon ◽  
Agriculture And Food ◽  
The Impact

The outburst of plastic pollution in terrestrial ecosystems poses a potential threat to agriculture and food safety. Studies have already provided evidence for the uptake of plastic microparticles by several plant species, accompanied by numerous developmental effects, using fluorescence labelling techniques. Here, we introduce the implementation of confocal Raman spectroscopy, a label-free method, for the effective detection of microplastics (MPs) accumulation in the roots of a common edible root vegetable plant, Raphanus sativus, after treatment with acrylonitrile butadiene styrene (ABS) powder. We also demonstrate the concomitant occurrence of phenotypic defects in the polymer-treated plants. We anticipate that this work can provide new insights not only into the extent of the impact this widespread phenomenon has on crop plants but also on the methodological requirements to address it.

scholarly journals Formation of GW190521 from stellar evolution: the impact of the hydrogen-rich envelope, dredge-up and 12C(α, γ)16O rate on the pair-instability black hole mass gap

2020 ◽  
Author(s):  
Guglielmo Costa ◽  
Alessandro Bressan ◽  
Michela Mapelli ◽  
Paola Marigo ◽  
Giuliano Iorio ◽  
...  
Keyword(s):  
Stellar Evolution ◽  
Reaction Rate ◽  
Primary Component ◽  
Mass Reduction ◽  
Black Hole Mass ◽  
Core Mass ◽  
The Core ◽  
Mass Gap ◽  
M Stars ◽  
The Impact

Abstract Pair-instability (PI) is expected to open a gap in the mass spectrum of black holes (BHs) between ≈40 − 65 M⊙ and ≈120 M⊙. The existence of the mass gap is currently being challenged by the detection of GW190521, with a primary component mass of $85^{+21}_{-14}$ M⊙. Here, we investigate the main uncertainties on the PI mass gap: the 12C(α, γ)16O reaction rate and the H-rich envelope collapse. With the standard 12C(α, γ)16O rate, the lower edge of the mass gap can be 70 M⊙ if we allow for the collapse of the residual H-rich envelope at metallicity Z ≤ 0.0003. Adopting the uncertainties given by the starlib database, for models computed with the 12C(α, γ)16O rate −1 σ, we find that the PI mass gap ranges between ≈80 M⊙ and ≈150 M⊙. Stars with MZAMS > 110 M⊙ may experience a deep dredge-up episode during the core helium-burning phase, that extracts matter from the core enriching the envelope. As a consequence of the He-core mass reduction, a star with MZAMS = 160 M⊙ may avoid the PI and produce a BH of 150 M⊙. In the −2 σ case, the PI mass gap ranges from 92 M⊙ to 110 M⊙. Finally, in models computed with 12C(α, γ)16O −3 σ, the mass gap is completely removed by the dredge-up effect. The onset of this dredge-up is particularly sensitive to the assumed model for convection and mixing. The combined effect of H-rich envelope collapse and low 12C(α, γ)16O rate can lead to the formation of BHs with masses consistent with the primary component of GW190521.

scholarly journals A numerical study of the impact perforation of sandwich panels with graded hollow sphere cores

2021 ◽  
Vol 13 (4) ◽  
pp. 168781402110094
Author(s):  
Ibrahim Elnasri ◽  
Han Zhao
Keyword(s):  
Boundary Conditions ◽  
Hollow Sphere ◽  
Sandwich Panel ◽  
Numerical Study ◽  
Sandwich Panels ◽  
Hopkinson Bar ◽  
Core Density ◽  
The Core ◽  
The Impact ◽  
Force Displacement

In this study, we numerically investigate the impact perforation of sandwich panels made of 0.8 mm 2024-T3 aluminum alloy skin sheets and graded polymeric hollow sphere cores with four different gradient profiles. A suitable numerical model was conducted using the LS-DYNA code, calibrated with an inverse perforation test, instrumented with a Hopkinson bar, and validated using experimental data from the literature. Moreover, the effects of quasi-static loading, landing rates, and boundary conditions on the perforation resistance of the studied graded core sandwich panels were discussed. The simulation results showed that the piercing force–displacement response of the graded core sandwich panels is affected by the core density gradient profiles. Besides, the energy absorption capability can be effectively enhanced by modifying the arrangement of the core layers with unclumping boundary conditions in the graded core sandwich panel, which is rather too hard to achieve with clumping boundary conditions.

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