scholarly journals Profiling of N6-Methyladenosine (m6A) Modification Landscape in Response to Drought Stress in Apple (Malus prunifolia (Willd.) Borkh)

Plants ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 103
Author(s):  
Xiushan Mao ◽  
Nan Hou ◽  
Zhenzhong Liu ◽  
Jieqiang He
Keyword(s):  
Drought Stress ◽  
Epigenetic Regulation ◽  
Epigenetic Modification ◽  
Messenger Rnas ◽  
Drought Treatment ◽  
Malus Prunifolia ◽  
Treatment Groups ◽  
Drought Tolerant ◽  
New Directions ◽  
Apple Cultivars

Drought stress is a significant environmental factor limiting crop growth worldwide. Malus prunifolia is an important apple species endemic to China and is used for apple cultivars and rootstocks with great drought tolerance. N6-methyladenosine (m6A) is a common epigenetic modification on messenger RNAs (mRNAs) in eukaryotes which is critical for various biological processes. However, there are no reports on m6A methylation in apple response to drought stress. Here, we assessed the m6A landscape of M. prunifolia seedlings in response to drought and analyzed the association between m6A modification and transcript expression. In total, we found 19,783 and 19,609 significant m6A peaks in the control and drought treatment groups, respectively, and discovered a UGUAH (H: A/U/C) motif. In M. prunifolia, under both control and drought conditions, peaks were highly enriched in the 3′ untranslated region (UTR) and coding sequence (CDS). Among 4204 significant differential m6A peaks in drought-treated M. prunifolia compared to control-treated M. prunifolia, 4158 genes with m6A modification were identified. Interestingly, a large number of hypermethylated peaks (4069) were stimulated by drought treatment compared to hypomethylation. Among the hypermethylated peak-related genes, 972 and 1238 differentially expressed genes (DEGs) were up- and down-regulated in response to drought, respectively. Gene ontology (GO) analyses of differential m6A-modified genes revealed that GO slims related to RNA processing, epigenetic regulation, and stress tolerance were significantly enriched. The m6A modification landscape depicted in this study sheds light on the epigenetic regulation of M. prunifolia in response to drought stress and indicates new directions for the breeding of drought-tolerant apple trees.

Drought Response of Rice in Northeastern Thailand Assessed via Fourier Transform Infrared Spectroscopy

2021 ◽  
Vol 74 ◽  
Author(s):  
Piyaporn Phansak ◽  
Supatcharee Siriwong ◽  
Nantawan Kanawapee ◽  
Kanjana Thumanu ◽  
Wuttichai Gunnula ◽  
...  
Keyword(s):  
Fourier Transform ◽  
Drought Stress ◽  
Lignin Content ◽  
Principal Component ◽  
Fourier Transform Infrared ◽  
Breeding Programs ◽  
Treatment Groups ◽  
Drought Tolerant ◽  
Relative Water ◽  
Rice Landrace

Abstract Drought isa major constraint in many rainfed areas and affects rice yield. We aimed to characterize the physiological changes in rice in response to drought using Fourier transform infrared (FTIR) spectroscopy. Eighty rice landrace seedlings were subjected to drought in the greenhouse using a PEG 6000. Physiological parameters, including total chlorophyll content, relative water content, electrolyte leakage, and biochemical changes were evaluated. Based on the FTIR results, the landraces were divided into three main groups: tolerant, moderately tolerant, and susceptible. Principal component analysis revealed spectral differences between the control and drought stress treatment groups. Lipid, pectin, and lignin content increased after drought stress. The biochemical components of plants at different drought tolerance levels were also compared. The lipid (CH2 and CH3), lignin (C=C), pectin (C=O), and protein (C=O, N–H) contents were the highest in the drought-tolerant cultivars, followed by the moderately tolerant and susceptible cultivars, respectively. Cultivar 17 and 49 were the most tolerant, and the functional groups were identified and characterized using FTIR. Overall, these results will be useful in selecting parental cultivars for rice breeding programs.

scholarly journals Response of Selected Garden Roses to Drought Stress

HortScience ◽  
2012 ◽  
Vol 47 (8) ◽  
pp. 1050-1055 ◽  
Author(s):  
Xiaoya Cai ◽  
Terri Starman ◽  
Genhua Niu ◽  
Charles Hall ◽  
Leonardo Lombardini
Keyword(s):  
Drought Stress ◽  
Root Growth ◽  
Field Capacity ◽  
Leaf Water ◽  
The Other ◽  
Flower Number ◽  
Drought Treatment ◽  
Greenhouse Study ◽  
Drought Tolerant ◽  
Substrate Moisture

A greenhouse study was conducted to evaluate the response of four garden roses (Rosa ×hybrid L.), ‘RADrazz’, ‘Belinda’s Dream’, ‘Old Blush’, and ‘Marie Pavie’, to drought stress. Plants grown in containers were subjected to two watering treatments, well-irrigated [water as needed: ≈35% substrate moisture content (SMC) at re-watering] and cyclic drought stress (withholding irrigation until plants exhibit incipient wilting: ≈10% SMC, then re-watering to field capacity for subsequent dry down). Shoot growth and flower number were reduced in the drought treatment compared with the well-irrigated plants in all cultivars with least reduction in ‘RADrazz’. Drought stress reduced root growth in ‘Belinda’s Dream’ and ‘Marie Pavie’, whereas there was no difference in root growth in ‘RADrazz’ and ‘Old Blush’. Decreased SMC induced reduction in net photosynthetic rate (Pn), stomatal conductance (gS), transpiration rate (E), and midday leaf water potential (ψ). Leaf water use efficiency (WUE) increased as SMC decreased in all cultivars. However, the relationship between these physiological parameters and SMC differed among the cultivars. At SMC between 10% and 20%, ‘RADrazz’ had higher Pn, gS, E, and WUE compared with the other three cultivars. Therefore, ‘RADrazz’ was the most drought-tolerant during container production among the cultivars investigated. With lower gas exchange rates and greater reduction in flower number at low SMC, ‘Marie Pavie’ was less drought-tolerant compared with the other three cultivars.

scholarly journals Screening of marigold (Tagetes erecta L.) cultivars for drought stress based on vegetative and physiological characteristics

2018 ◽  
Vol 3 (2) ◽  
pp. 56 ◽  
Author(s):  
Adnan Younis ◽  
Atif Riaz ◽  
Muhammad Qasim ◽  
Farakh Mansoor ◽  
Faisal Zulfiqar ◽  
...  
Keyword(s):  
Water Stress ◽  
Drought Stress ◽  
Tagetes Erecta ◽  
Drought Treatment ◽  
Chlorophyll Contents ◽  
Drought Tolerant ◽  
Randomized Design ◽  
Cultivar Selection ◽  
Tagetes Erecta L ◽  
Water Scarce

<p>Drought tolerance is an important genotypic character to be exploited for the plant cultivar selection under water deficit conditions. In the recent study, we examined the response of two marigold cultivars (Inca and Bonanza) under different regimes of drought stress. The aim was to determine the best performing cultivar under water/drought stress. Three irrigation treatments include; 4 days (T<sub>1</sub>), 6 days (T<sub>2</sub>) and 8 days (T<sub>3</sub>) in comparison to control 1 day (T<sub>0</sub>) interval were imposed. Response characters under study were morphological, physiological and anatomical. Complete Randomized Design (CRD) with four replications in two factorial arrangements was followed for experiment layout. The results revealed that increasing water stress adversely affect plant height, in both cultivars. Both cultivars showed a decreasing trend to the number of flowers under water stress. Total chlorophyll contents including a, b were also showed reduction under prolonged drought treatment in both cultivars from (2.7 mg g<sup>-1</sup> FW) to (1 mg g<sup>-1</sup> FW). Overall, the performance of cultivar (cv.) Inca was satisfactory under water stress regimes. These results are helpful for selecting drought tolerant marigold cultivars in water scarce areas.   </p>

scholarly journals Proteins Involved in Energy Metabolism and Oxidative Regulation Associated with Genotypic Variations in Drought Tolerance for Tall Fescue

2018 ◽  
Vol 143 (3) ◽  
pp. 207-212
Author(s):  
Jianming Sun ◽  
Yiming Liu ◽  
Xianglin Li ◽  
Bingru Huang
Keyword(s):  
Drought Stress ◽  
Drought Tolerance ◽  
Tall Fescue ◽  
Photochemical Efficiency ◽  
Grass Species ◽  
Drought Treatment ◽  
Drought Tolerant ◽  
Oxidative Regulation ◽  
Tolerant Genotype ◽  
Adaptation To Drought

Protein metabolism plays an important role in plant adaptation to drought stress. The objective of this study was to identify drought-responsive proteins associated with differential drought tolerance for a tolerant genotype (RU9) and a sensitive genotype (RU18) of tall fescue (Lolium arundinacea). Plants of both genotypes were grown under well-watered conditions or subjected to drought stress by withholding irrigation for 12 days in a growth chamber controlled at the optimal growth temperatures of 23/18 °C (day/night). Physiological analysis demonstrated that RU9 was relatively more drought tolerant than RU18, as shown by the higher leaf net photosynthetic rate (Pn) and photochemical efficiency at 12 days of drought treatment. Differentially expressed proteins between RU9 and RU18 exposed to drought stress were identified by two-dimensional electrophoresis and mass spectrometry (MS). Several proteins [photosystem I reaction center subunit II, Rubisco small subunit, and Glyceraldehyde-3-phosphate dehydrogenase (GADPH)] in photosynthesis, respiration, or oxidative regulation exhibited higher abundance in RU9 than RU18 under drought stress. These results suggested the critical importance of energy and oxidative metabolism in tall fescue adaptation to drought stress. Those abundant proteins in the drought-tolerant genotype could be used as biomarkers or developed to molecular markers to develop elite drought-tolerant germplasm in tall fescue and other cool-season perennial grass species.

scholarly journals Differential responses of antioxidants and dehydrin expression in two switchgrass (Panicum virgatum) cultivars contrasting in drought tolerance

2018 ◽  
Author(s):  
Yiming Liu ◽  
Guofu Hu ◽  
Guoqiang Wu ◽  
Guodao Liu ◽  
Hengfu Huan ◽  
...  
Keyword(s):  
Drought Stress ◽  
Drought Tolerance ◽  
Panicum Virgatum ◽  
Limiting Factor ◽  
Drought Treatment ◽  
Drought Tolerant ◽  
Genes Expression ◽  
Relative Water ◽  
Mda Content ◽  
Leaf Relative Water Content

AbstractDrought stress is a major limiting factor for plant growth and development in many regions of the world. This study was designed to investigate antioxidant metabolism and dehydrin expression responses to drought stress in two switchgrass cultivars (drought tolerant Alamo, and drought sensitive Dacotah) contrasting in drought tolerance. The plants were subjected to well-watered [100% evapotranspiration (ET)] or drought stress (30%-50% ET) conditions for up to 24 d in growth chambers. Drought stress decreased leaf relative water content (RWC), increased leaf electrolyte leakage (EL), leaf malondialdehyde (MDA) content in two cultivars, but Alamo exhibited higher leaf RWC level, lower leaf EL and MDA when compared to Dacotah at 24 d of drought treatment. Drought stress also increased superoxide dismutase (SOD), catalase (CAT) and ascorbate peroxidase (APX) activities in two cultivars, Alamo had relatively higher SOD, CAT and APX activities and greater abundance of SOD and APX isozymes than Dacotah at 24 d of drought treatment. Alamo had higher abundance of 55 KDa and 18 KDa dehydrin accumulation than Dacotah under drought treatment. Relative genes expression level of PvCAT1, PvAPX2, PvERD and PvPIP1;5 in Alamo were significantly higher than Dacotah at 24 d of drought treatment. These results suggest that increase in antioxidant enzymes and accumulation of dehydrin were highly related with switchgrass drought tolerance. Antioxidant enzyme activity, isozyme expression and dehydrin abundance could provide a useful screening tool to identify relative drought tolerance in switchgrass cultivars.

Mitigation of drought stress in maize through inoculation with drought tolerant ACC deaminase containing PGPR under axenic conditions

2019 ◽  
Vol 52 (1) ◽  
Author(s):  
Subhan Danish ◽  
Muhammad Zafar-Ul-Hye ◽  
Shahid Hussain ◽  
Muhammad Riaz ◽  
Muhammad Farooq Qayyum
Keyword(s):  
Drought Stress ◽  
Acc Deaminase ◽  
Drought Tolerant ◽  
Axenic Conditions

scholarly journals Flavonoids improve drought tolerance of maize seedlings by regulating the homeostasis of reactive oxygen species

2021 ◽  
Author(s):  
Baozhu Li ◽  
Ruonan Fan ◽  
Guiling Sun ◽  
Ting Sun ◽  
Yanting Fan ◽  
...  
Keyword(s):  
Free Radicals ◽  
Drought Stress ◽  
Drought Tolerance ◽  
Infrared Imaging ◽  
Oxygen Free Radicals ◽  
Transcriptome Profiling ◽  
Far Infrared ◽  
Drought Treatment ◽  
Physiological Characterization ◽  
Oxidative Damages

Abstract Background and aims As drought threatens the yield and quality of maize (Zea mays L.), it is important to dissect the molecular basis of maize drought tolerance. Flavonoids, participate in the scavenging of oxygen free radicals and alleviate stress-induced oxidative damages. This study aims to dissect the function of flavonoids in the improvement of maize drought tolerance. Methods Using far-infrared imaging screening, we previously isolated a drought overly insensitivity (doi) mutant from an ethyl methanesulfonate (EMS)-mutagenized maize library and designated it as doi57. In this study, we performed a physiological characterization and transcriptome profiling of doi57 in comparison to corresponding wild-type B73 under drought stress. Results Under drought stress, doi57 seedlings displayed lower leaf-surface temperature (LST), faster water loss, and better performance in growth than B73. Transcriptome analysis reveals that key genes involved in flavonoid biosynthesis are enriched among differentially expressed genes in doi57. In line with these results, more flavonols and less hydrogen peroxide (H2O2) were accumulated in guard cells of doi57 than in those of B73 with the decrease of soil water content (SWC). Moreover, the capacity determined from doi57 seedling extracts to scavenge oxygen free radicals was more effective than that of B73 under the drought treatment. Additionally, doi57 seedlings had higher photosynthetic rates, stomatal conductance, transpiration rates, and water use efficiency than B73 exposed to drought stress, resulting in high biomass and greater root/shoot ratios in doi57 mutant plants. Conclusion Flavonoids may facilitate maize seedling drought tolerance by lowering drought-induced oxidative damage as well regulating stomatal movement.

scholarly journals Improving Drought Tolerance in Mungbean (Vigna radiata L. Wilczek): Morpho-Physiological, Biochemical and Molecular Perspectives

Agronomy ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. 1534
Author(s):  
Chandra Mohan Singh ◽  
Poornima Singh ◽  
Chandrakant Tiwari ◽  
Shalini Purwar ◽  
Mukul Kumar ◽  
...  
Keyword(s):  
Drought Stress ◽  
Drought Tolerance ◽  
Crop Production ◽  
Mitigation Strategies ◽  
Theoretical Research ◽  
Whole Genome Sequence ◽  
Complex Nature ◽  
Drought Tolerant ◽  
Breeding Programmes ◽  
The Impact

Drought stress is considered a severe threat to crop production. It adversely affects the morpho-physiological, biochemical and molecular functions of the plants, especially in short duration crops like mungbean. In the past few decades, significant progress has been made towards enhancing climate resilience in legumes through classical and next-generation breeding coupled with omics approaches. Various defence mechanisms have been reported as key players in crop adaptation to drought stress. Many researchers have identified potential donors, QTLs/genes and candidate genes associated to drought tolerance-related traits. However, cloning and exploitation of these loci/gene(s) in breeding programmes are still limited. To bridge the gap between theoretical research and practical breeding, we need to reveal the omics-assisted genetic variations associated with drought tolerance in mungbean to tackle this stress. Furthermore, the use of wild relatives in breeding programmes for drought tolerance is also limited and needs to be focused. Even after six years of decoding the whole genome sequence of mungbean, the genome-wide characterization and expression of various gene families and transcriptional factors are still lacking. Due to the complex nature of drought tolerance, it also requires integrating high throughput multi-omics approaches to increase breeding efficiency and genomic selection for rapid genetic gains to develop drought-tolerant mungbean cultivars. This review highlights the impact of drought stress on mungbean and mitigation strategies for breeding high-yielding drought-tolerant mungbean varieties through classical and modern omics technologies.

scholarly journals Genome wide identification and characterization of light-harvesting Chloro a/b binding (LHC) genes reveals their potential role in enhancing drought tolerance in Gossypium hirsutum

2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Teame Gereziher MEHARI ◽  
Yanchao XU ◽  
Richard Odongo MAGWANGA ◽  
Muhammad Jawad UMER ◽  
Joy Nyangasi KIRUNGU ◽  
...  
Keyword(s):  
Drought Stress ◽  
Gossypium Hirsutum ◽  
Abiotic Stresses ◽  
Substitution Rate ◽  
Synonymous Substitution ◽  
Synonymous Substitution Rate ◽  
Drought Tolerant ◽  
Genome Wide ◽  
Identification And Characterization

Abstract Background Cotton is an important commercial crop for being a valuable source of natural fiber. Its production has undergone a sharp decline because of abiotic stresses, etc. Drought is one of the major abiotic stress causing significant yield losses in cotton. However, plants have evolved self-defense mechanisms to cope abiotic factors like drought, salt, cold, etc. The evolution of stress responsive transcription factors such as the trihelix, a nodule-inception-like protein (NLP), and the late embryogenesis abundant proteins have shown positive response in the resistance improvement to several abiotic stresses. Results Genome wide identification and characterization of the effects of Light-Harvesting Chloro a/b binding (LHC) genes were carried out in cotton under drought stress conditions. A hundred and nine proteins encoded by the LHC genes were found in the cotton genome, with 55, 27, and 27 genes found to be distributed in Gossypium hirsutum, G. arboreum, and G. raimondii, respectively. The proteins encoded by the genes were unevenly distributed on various chromosomes. The Ka/Ks (Non-synonymous substitution rate/Synonymous substitution rate) values were less than one, an indication of negative selection of the gene family. Differential expressions of genes showed that majority of the genes are being highly upregulated in the roots as compared with leaves and stem tissues. Most genes were found to be highly expressed in MR-85, a relative drought tolerant germplasm. Conclusion The results provide proofs of the possible role of the LHC genes in improving drought stress tolerance, and can be explored by cotton breeders in releasing a more drought tolerant cotton varieties.

scholarly journals Comparing transcriptional responses to Fusarium crown rot in wheat and barley identified an important relationship between disease resistance and drought tolerance

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Z. Y. Su ◽  
J. J. Powell ◽  
S. Gao ◽  
M. Zhou ◽  
C. Liu
Keyword(s):  
Drought Stress ◽  
Drought Tolerance ◽  
Crown Rot ◽  
Differentially Expressed ◽  
Transcriptional Responses ◽  
Drought Treatment ◽  
Crop Species ◽  
Fusarium Crown Rot ◽  
Important Relationship ◽  
The Impact

Abstract Background Fusarium crown rot (FCR) is a chronic disease in cereal production worldwide. The impact of this disease is highly environmentally dependant and significant yield losses occur mainly in drought-affected crops. Results In the study reported here, we evaluated possible relationships between genes conferring FCR resistance and drought tolerance using two approaches. The first approach studied FCR induced differentially expressed genes (DEGs) targeting two barley and one wheat loci against a panel of genes curated from the literature based on known functions in drought tolerance. Of the 149 curated genes, 61.0% were responsive to FCR infection across the three loci. The second approach was a comparison of the global DEGs induced by FCR infection with the global transcriptomic responses under drought in wheat. This analysis found that approximately 48.0% of the DEGs detected one week following drought treatment and 74.4% of the DEGs detected three weeks following drought treatment were also differentially expressed between the susceptible and resistant isolines under FCR infection at one or more timepoints. As for the results from the first approach, the vast majority of common DEGs were downregulated under drought and expressed more highly in the resistant isoline than the sensitive isoline under FCR infection. Conclusions Results from this study suggest that the resistant isoline in wheat was experiencing less drought stress, which could contribute to the stronger defence response than the sensitive isoline. However, most of the genes induced by drought stress in barley were more highly expressed in the susceptible isolines than the resistant isolines under infection, indicating that genes conferring drought tolerance and FCR resistance may interact differently between these two crop species. Nevertheless, the strong relationship between FCR resistance and drought responsiveness provides further evidence indicating the possibility to enhance FCR resistance by manipulating genes conferring drought tolerance.

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