scholarly journals Comparing RGB-D Sensors for Close Range Outdoor Agricultural Phenotyping

Sensors ◽  
2018 ◽  
Vol 18 (12) ◽  
pp. 4413 ◽  
Author(s):  
Adar Vit ◽  
Guy Shani

Phenotyping is the task of measuring plant attributes for analyzing the current state of the plant. In agriculture, phenotyping can be used to make decisions concerning the management of crops, such as the watering policy, or whether to spray for a certain pest. Currently, large scale phenotyping in fields is typically done using manual labor, which is a costly, low throughput process. Researchers often advocate the use of automated systems for phenotyping, relying on the use of sensors for making measurements. The recent rise of low cost, yet reasonably accurate, RGB-D sensors has opened the way for using these sensors in field phenotyping applications. In this paper, we investigate the applicability of four different RGB-D sensors for this task. We conduct an outdoor experiment, measuring plant attribute in various distances and light conditions. Our results show that modern RGB-D sensors, in particular, the Intel D435 sensor, provides a viable tool for close range phenotyping tasks in fields.

Author(s):  
Adar Vit ◽  
Guy Shani

Phenotyping is the task of measuring plant attributes for analyzing the current state of the plant. In agriculture, phenotyping can be used to make decisions concerning the management of crops, such as the watering policy, or whether to spray for a certain pest. Currently, large scale phenotyping in fields is typically done using manual labor, which is a costly, low throughput process. Researchers often advocate the use of automated systems for phenotyping, relying on the use of sensors for making measurements. The recent rise of low cost, yet reasonably accurate, RGB-D sensors has opened the way for using these sensors in field phenotyping applications. In this paper, we investigate the applicability of 4 different RGB-D sensors for this task. We conduct an outdoor experiment, measuring plant attribute in various distances and light conditions. Our results show that modern RGB-D sensors, in particular, the Intel D435 sensor, provides a viable tool for close range phenotyping tasks in fields.


2020 ◽  
Vol 9 (6) ◽  
pp. 403
Author(s):  
Xueyan Zhang

China’s rural population has declined markedly with the acceleration of urbanization and industrialization, but the area under rural homesteads has continued to expand. Proper rural land use and management require large-scale, efficient, and low-cost rural residential surveys; however, such surveys are time-consuming and difficult to accomplish. Unmanned aerial vehicle (UAV) technology coupled with a deep learning architecture and 3D modelling can provide a potential alternative to traditional surveys for gathering rural homestead information. In this study, a method to estimate the village-level homestead area, a 3D-based building height model (BHM), and the number of building floors based on UAV imagery and the U-net algorithm was developed, and the respective estimation accuracies were found to be 0.92, 0.99, and 0.89. This method is rapid and inexpensive compared to the traditional time-consuming and costly household surveys, and, thus, it is of great significance to the ongoing use and management of rural homestead information, especially with regards to the confirmation of homestead property rights in China. Further, the proposed combination of UAV imagery and U-net technology may have a broader application in rural household surveys, as it can provide more information for decision-makers to grasp the current state of the rural socio-economic environment.


2019 ◽  
Vol 12 (9) ◽  
pp. 5161-5181 ◽  
Author(s):  
Tongshu Zheng ◽  
Michael H. Bergin ◽  
Ronak Sutaria ◽  
Sachchida N. Tripathi ◽  
Robert Caldow ◽  
...  

Abstract. Wireless low-cost particulate matter sensor networks (WLPMSNs) are transforming air quality monitoring by providing particulate matter (PM) information at finer spatial and temporal resolutions. However, large-scale WLPMSN calibration and maintenance remain a challenge. The manual labor involved in initial calibration by collocation and routine recalibration is intensive. The transferability of the calibration models determined from initial collocation to new deployment sites is questionable, as calibration factors typically vary with the urban heterogeneity of operating conditions and aerosol optical properties. Furthermore, the stability of low-cost sensors can drift or degrade over time. This study presents a simultaneous Gaussian process regression (GPR) and simple linear regression pipeline to calibrate and monitor dense WLPMSNs on the fly by leveraging all available reference monitors across an area without resorting to pre-deployment collocation calibration. We evaluated our method for Delhi, where the PM2.5 measurements of all 22 regulatory reference and 10 low-cost nodes were available for 59 d from 1 January to 31 March 2018 (PM2.5 averaged 138±31 µg m−3 among 22 reference stations), using a leave-one-out cross-validation (CV) over the 22 reference nodes. We showed that our approach can achieve an overall 30 % prediction error (RMSE: 33 µg m−3) at a 24 h scale, and it is robust as it is underscored by the small variability in the GPR model parameters and in the model-produced calibration factors for the low-cost nodes among the 22-fold CV. Of the 22 reference stations, high-quality predictions were observed for those stations whose PM2.5 means were close to the Delhi-wide mean (i.e., 138±31 µg m−3), and relatively poor predictions were observed for those nodes whose means differed substantially from the Delhi-wide mean (particularly on the lower end). We also observed washed-out local variability in PM2.5 across the 10 low-cost sites after calibration using our approach, which stands in marked contrast to the true wide variability across the reference sites. These observations revealed that our proposed technique (and more generally the geostatistical technique) requires high spatial homogeneity in the pollutant concentrations to be fully effective. We further demonstrated that our algorithm performance is insensitive to training window size as the mean prediction error rate and the standard error of the mean (SEM) for the 22 reference stations remained consistent at ∼30 % and ∼3 %–4 %, respectively, when an increment of 2 d of data was included in the model training. The markedly low requirement of our algorithm for training data enables the models to always be nearly the most updated in the field, thus realizing the algorithm's full potential for dynamically surveilling large-scale WLPMSNs by detecting malfunctioning low-cost nodes and tracking the drift with little latency. Our algorithm presented similarly stable 26 %–34 % mean prediction errors and ∼3 %–7 % SEMs over the sampling period when pre-trained on the current week's data and predicting 1 week ahead, and therefore it is suitable for online calibration. Simulations conducted using our algorithm suggest that in addition to dynamic calibration, the algorithm can also be adapted for automated monitoring of large-scale WLPMSNs. In these simulations, the algorithm was able to differentiate malfunctioning low-cost nodes (due to either hardware failure or under the heavy influence of local sources) within a network by identifying aberrant model-generated calibration factors (i.e., slopes close to zero and intercepts close to the Delhi-wide mean of true PM2.5). The algorithm was also able to track the drift of low-cost nodes accurately within 4 % error for all the simulation scenarios. The simulation results showed that ∼20 reference stations are optimum for our solution in Delhi and confirmed that low-cost nodes can extend the spatial precision of a network by decreasing the extent of pure interpolation among only reference stations. Our solution has substantial implications in reducing the amount of manual labor for the calibration and surveillance of extensive WLPMSNs, improving the spatial comprehensiveness of PM evaluation, and enhancing the accuracy of WLPMSNs.


2019 ◽  
Vol 9 (11) ◽  
pp. 2389 ◽  
Author(s):  
Chengquan Zhou ◽  
Hongbao Ye ◽  
Zhifu Xu ◽  
Jun Hu ◽  
Xiaoyan Shi ◽  
...  

Leaf coverage is an indicator of plant growth rate and predicted yield, and thus it is crucial to plant-breeding research. Robust image segmentation of leaf coverage from remote-sensing images acquired by unmanned aerial vehicles (UAVs) in varying environments can be directly used for large-scale coverage estimation, and is a key component of high-throughput field phenotyping. We thus propose an image-segmentation method based on machine learning to extract relatively accurate coverage information from the orthophoto generated after preprocessing. The image analysis pipeline, including dataset augmenting, removing background, classifier training and noise reduction, generates a set of binary masks to obtain leaf coverage from the image. We compare the proposed method with three conventional methods (Hue-Saturation-Value, edge-detection-based algorithm, random forest) and a frontier deep-learning method called DeepLabv3+. The proposed method improves indicators such as Qseg, Sr, Es and mIOU by 15% to 30%. The experimental results show that this approach is less limited by radiation conditions, and that the protocol can easily be implemented for extensive sampling at low cost. As a result, with the proposed method, we recommend using red-green-blue (RGB)-based technology in addition to conventional equipment for acquiring the leaf coverage of agricultural crops.


2019 ◽  
Author(s):  
Tongshu Zheng ◽  
Michael H. Bergin ◽  
Ronak Sutaria ◽  
Sachchida N. Tripathi ◽  
Robert Caldow ◽  
...  

Abstract. Wireless low-cost particulate matter sensor networks (WLPMSNs) are transforming air quality monitoring by providing PM information at finer spatial and temporal resolutions; however, large-scale WLPMSN calibration and maintenance remain a challenge because the manual labor involved in initial calibration by collocation and routine recalibration is intensive, the transferability of the calibration models determined from initial collocation to new deployment sites is questionable as calibration factors typically vary with urban heterogeneity of operating conditions and aerosol optical properties, and the stability of low-cost sensors can develop drift or degrade over time. This study presents a simultaneous Gaussian Process regression (GPR) and simple linear regression pipeline to calibrate and monitor dense WLPMSNs on the fly by leveraging all available reference monitors across an area without resorting to pre-deployment collocation calibration. We evaluated our method for Delhi where the PM2.5 measurements of all 22 regulatory reference and 10 low-cost nodes were available in 59 valid days from 1 January 2018 to 31 March 2018 (PM2.5 averaged 138 ± 31 μg m−3 among 22 reference stations) using a leave-one-out cross-validation (CV) over the 22 reference nodes. We showed that our approach can achieve an overall 30 % prediction error (RMSE: 33 μg m−3) at a 24 h scale and is robust as underscored by the small variability in the GPR model parameters and in the model-produced calibration factors for the low-cost nodes among the 22-fold CV. We revealed that the accuracy of our calibrations depends on the degree of homogeneity of PM concentrations, and decreases with increasing local source contributions. As by-products of dynamic calibration, our algorithm can be adapted for automated large-scale WLPMSN monitoring as simulations proved its capability of differentiating malfunctioning or singular low-cost nodes within a network via model-generated calibration factors with the aberrant nodes having slopes close to 0 and intercepts close to the global mean of true PM2.5 and of tracking the drift of low-cost nodes accurately within 4 % error for all the simulation scenarios. The simulation results showed that ~20 reference stations are optimum for our solution in Delhi and confirmed that low-cost nodes can extend the spatial precision of a network by decreasing the extent of pure interpolation among only reference stations. Our solution has substantial implications in reducing the amount of manual labor for the calibration and surveillance of extensive WLPMSNs, improving the spatial comprehensiveness of PM evaluation, and enhancing the accuracy of WLPMSNs.


1987 ◽  
Vol 19 (5-6) ◽  
pp. 701-710 ◽  
Author(s):  
B. L. Reidy ◽  
G. W. Samson

A low-cost wastewater disposal system was commissioned in 1959 to treat domestic and industrial wastewaters generated in the Latrobe River valley in the province of Gippsland, within the State of Victoria, Australia (Figure 1). The Latrobe Valley is the centre for large-scale generation of electricity and for the production of pulp and paper. In addition other industries have utilized the brown coal resource of the region e.g. gasification process and char production. Consequently, industrial wastewaters have been dominant in the disposal system for the past twenty-five years. The mixed industrial-domestic wastewaters were to be transported some eighty kilometres to be treated and disposed of by irrigation to land. Several important lessons have been learnt during twenty-five years of operating this system. Firstly the composition of the mixed waste stream has varied significantly with the passage of time and the development of the industrial base in the Valley, so that what was appropriate treatment in 1959 is not necessarily acceptable in 1985. Secondly the magnitude of adverse environmental impacts engendered by this low-cost disposal procedure was not imagined when the proposal was implemented. As a consequence, clean-up procedures which could remedy the adverse effects of twenty-five years of impact are likely to be costly. The question then may be asked - when the total costs including rehabilitation are considered, is there really a low-cost solution for environmentally safe disposal of complex wastewater streams?


BMC Biology ◽  
2019 ◽  
Vol 17 (1) ◽  
Author(s):  
Amrita Srivathsan ◽  
Emily Hartop ◽  
Jayanthi Puniamoorthy ◽  
Wan Ting Lee ◽  
Sujatha Narayanan Kutty ◽  
...  

Abstract Background More than 80% of all animal species remain unknown to science. Most of these species live in the tropics and belong to animal taxa that combine small body size with high specimen abundance and large species richness. For such clades, using morphology for species discovery is slow because large numbers of specimens must be sorted based on detailed microscopic investigations. Fortunately, species discovery could be greatly accelerated if DNA sequences could be used for sorting specimens to species. Morphological verification of such “molecular operational taxonomic units” (mOTUs) could then be based on dissection of a small subset of specimens. However, this approach requires cost-effective and low-tech DNA barcoding techniques because well-equipped, well-funded molecular laboratories are not readily available in many biodiverse countries. Results We here document how MinION sequencing can be used for large-scale species discovery in a specimen- and species-rich taxon like the hyperdiverse fly family Phoridae (Diptera). We sequenced 7059 specimens collected in a single Malaise trap in Kibale National Park, Uganda, over the short period of 8 weeks. We discovered > 650 species which exceeds the number of phorid species currently described for the entire Afrotropical region. The barcodes were obtained using an improved low-cost MinION pipeline that increased the barcoding capacity sevenfold from 500 to 3500 barcodes per flowcell. This was achieved by adopting 1D sequencing, resequencing weak amplicons on a used flowcell, and improving demultiplexing. Comparison with Illumina data revealed that the MinION barcodes were very accurate (99.99% accuracy, 0.46% Ns) and thus yielded very similar species units (match ratio 0.991). Morphological examination of 100 mOTUs also confirmed good congruence with morphology (93% of mOTUs; > 99% of specimens) and revealed that 90% of the putative species belong to the neglected, megadiverse genus Megaselia. We demonstrate for one Megaselia species how the molecular data can guide the description of a new species (Megaselia sepsioides sp. nov.). Conclusions We document that one field site in Africa can be home to an estimated 1000 species of phorids and speculate that the Afrotropical diversity could exceed 200,000 species. We furthermore conclude that low-cost MinION sequencers are very suitable for reliable, rapid, and large-scale species discovery in hyperdiverse taxa. MinION sequencing could quickly reveal the extent of the unknown diversity and is especially suitable for biodiverse countries with limited access to capital-intensive sequencing facilities.


2021 ◽  
Vol 16 (1) ◽  
Author(s):  
Xiao Li Ma ◽  
Guang Tao Fei ◽  
Shao Hui Xu

Abstract In this study, polyaniline (PANI) is prepared by means of chemical oxidization polymerization and directly loaded on the modified fiber ball (m-FB) to obtain macroscale polyaniline/modified fiber ball (PANI/m-FB) composite, and then its removal ability of Cr(VI) is investigated. The effects of different parameters such as contact time, pH value and initial concentration on Cr(VI) removal efficiency are discussed. The experimental results illustrate that the favorable pH value is 5.0 and the maximum removal capacity is measured to be 293.13 mg g−1. Besides, PANI/m-FB composites can be regenerated and reused after being treated with strong acid. The kinetic study indicates that the adsorption procedure is mainly controlled by chemical adsorption. More importantly, the macroscale of composites can avoid secondary pollution efficiently. Benefiting from the low cost, easy preparation in large scale, environmentally friendly, excellent recycling performance as well as high removal ability, PANI/m-FB composites exhibit a potential possibility to remove Cr(VI) from industrial waste water. Graphic Abstract The polyaniline (PANI) was coated on modified fiber ball (m-FB) to remove Cr(VI) in waste water, and this kind of PANI/m-FB composites can avoid secondary pollution efficiently due to its macrostructure. Furthermore, the removal capacity can reach to 291.13 mg/g and can be multiple reused.


2020 ◽  
Vol 9 (1) ◽  
pp. 751-759 ◽  
Author(s):  
Xinxin Lian ◽  
Yuanjiang Lv ◽  
Haoliang Sun ◽  
David Hui ◽  
Guangxin Wang

AbstractAg nanoparticles/Mo–Ag alloy films with different Ag contents were prepared on polyimide by magnetron sputtering. The effects of Ag contents on the microstructure of self-grown Ag nanoparticles/Mo–Ag alloy films were investigated using XRD, FESEM, EDS and TEM. The Ag content plays an important role in the size and number of uniformly distributed Ag nanoparticles spontaneously formed on the Mo–Ag alloy film surface, and the morphology of the self-grown Ag nanoparticles has changed significantly. Additionally, it is worth noting that the Ag nanoparticles/Mo–Ag alloy films covered by a thin Ag film exhibits highly sensitive surface-enhanced Raman scattering (SERS) performance. The electric field distributions were calculated using finite-difference time-domain analysis to further prove that the SERS enhancement of the films is mainly determined by “hot spots” in the interparticle gap between Ag nanoparticles. The detection limit of the Ag film/Ag nanoparticles/Mo–Ag alloy film for Rhodamine 6G probe molecules was 5 × 10−14 mol/L. Therefore, the novel type of the Ag film/Ag nanoparticles/Mo–Ag alloy film can be used as an ideal SERS-active substrate for low-cost and large-scale production.


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